Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1800

Experiment: KB with Phloretin 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1799 and Psyr_1800 are separated by 74 nucleotidesPsyr_1800 and Psyr_1801 are separated by 51 nucleotides Psyr_1799: Psyr_1799 - Protein of unknown function DUF6, at 2,072,602 to 2,073,534 _1799 Psyr_1800: Psyr_1800 - transcriptional regulator, LysR family, at 2,073,609 to 2,074,463 _1800 Psyr_1801: Psyr_1801 - 1-aminocyclopropane-1-carboxylate deaminase, at 2,074,515 to 2,075,531 _1801 Position (kb) 2073 2074 2075Strain fitness (log2 ratio) -2 -1 0 1at 2072.744 kb on + strand, within Psyr_1799at 2072.745 kb on - strand, within Psyr_1799at 2072.795 kb on + strand, within Psyr_1799at 2072.796 kb on - strand, within Psyr_1799at 2072.796 kb on - strand, within Psyr_1799at 2072.867 kb on - strand, within Psyr_1799at 2073.016 kb on - strand, within Psyr_1799at 2073.074 kb on + strand, within Psyr_1799at 2073.074 kb on + strand, within Psyr_1799at 2073.075 kb on - strand, within Psyr_1799at 2073.075 kb on - strand, within Psyr_1799at 2073.075 kb on - strand, within Psyr_1799at 2073.254 kb on + strand, within Psyr_1799at 2073.255 kb on - strand, within Psyr_1799at 2073.524 kb on + strandat 2073.525 kb on - strandat 2073.525 kb on - strandat 2073.525 kb on - strandat 2073.546 kb on - strandat 2073.699 kb on - strand, within Psyr_1800at 2073.699 kb on - strand, within Psyr_1800at 2074.002 kb on + strand, within Psyr_1800at 2074.240 kb on + strand, within Psyr_1800at 2074.241 kb on - strand, within Psyr_1800at 2074.241 kb on - strand, within Psyr_1800at 2074.450 kb on - strandat 2074.450 kb on - strandat 2074.577 kb on - strandat 2074.651 kb on + strandat 2074.652 kb on - strand, within Psyr_1801at 2074.957 kb on + strand, within Psyr_1801at 2075.218 kb on + strand, within Psyr_1801at 2075.218 kb on + strand, within Psyr_1801at 2075.219 kb on - strand, within Psyr_1801at 2075.428 kb on + strand, within Psyr_1801at 2075.428 kb on + strand, within Psyr_1801at 2075.429 kb on - strand, within Psyr_1801at 2075.429 kb on - strand, within Psyr_1801at 2075.429 kb on - strand, within Psyr_1801

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Phloretin 250 ug/ml
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2,072,744 + Psyr_1799 0.15 +1.2
2,072,745 - Psyr_1799 0.15 -0.5
2,072,795 + Psyr_1799 0.21 +0.2
2,072,796 - Psyr_1799 0.21 -0.2
2,072,796 - Psyr_1799 0.21 +0.3
2,072,867 - Psyr_1799 0.28 +0.9
2,073,016 - Psyr_1799 0.44 +0.9
2,073,074 + Psyr_1799 0.51 -1.8
2,073,074 + Psyr_1799 0.51 +0.6
2,073,075 - Psyr_1799 0.51 +0.4
2,073,075 - Psyr_1799 0.51 +0.5
2,073,075 - Psyr_1799 0.51 +0.5
2,073,254 + Psyr_1799 0.70 -0.8
2,073,255 - Psyr_1799 0.70 -0.6
2,073,524 + -0.7
2,073,525 - +0.2
2,073,525 - -0.2
2,073,525 - -0.1
2,073,546 - -0.3
2,073,699 - Psyr_1800 0.11 +0.5
2,073,699 - Psyr_1800 0.11 +0.3
2,074,002 + Psyr_1800 0.46 +1.0
2,074,240 + Psyr_1800 0.74 -0.5
2,074,241 - Psyr_1800 0.74 +0.3
2,074,241 - Psyr_1800 0.74 +0.6
2,074,450 - -0.3
2,074,450 - +0.5
2,074,577 - +0.0
2,074,651 + +1.1
2,074,652 - Psyr_1801 0.13 -1.4
2,074,957 + Psyr_1801 0.43 +1.1
2,075,218 + Psyr_1801 0.69 +0.2
2,075,218 + Psyr_1801 0.69 -1.8
2,075,219 - Psyr_1801 0.69 -0.6
2,075,428 + Psyr_1801 0.90 -1.1
2,075,428 + Psyr_1801 0.90 -0.7
2,075,429 - Psyr_1801 0.90 -0.5
2,075,429 - Psyr_1801 0.90 -0.2
2,075,429 - Psyr_1801 0.90 +0.5

Or see this region's nucleotide sequence