Experiment: KB with Phloretin 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0556 and Psyr_0557 are separated by 88 nucleotides Psyr_0557 and Psyr_0558 are separated by 65 nucleotides
Psyr_0556: Psyr_0556 - Histidine kinase, HAMP region, at 629,377 to 630,918
_0556
Psyr_0557: Psyr_0557 - phosphoserine phosphatase, at 631,007 to 632,263
_0557
Psyr_0558: Psyr_0558 - conserved hypothetical protein, at 632,329 to 634,113
_0558
Position (kb) 631
632
633 Strain fitness (log2 ratio) -2
-1
0
1
2 at 630.954 kb on - strand at 630.954 kb on - strand at 630.956 kb on - strand at 631.014 kb on + strand at 631.014 kb on + strand at 631.015 kb on - strand at 631.015 kb on - strand at 631.015 kb on - strand at 631.069 kb on + strand at 631.211 kb on - strand, within Psyr_0557 at 631.257 kb on - strand, within Psyr_0557 at 631.413 kb on - strand, within Psyr_0557 at 631.791 kb on + strand, within Psyr_0557 at 631.881 kb on - strand, within Psyr_0557 at 631.913 kb on + strand, within Psyr_0557 at 631.913 kb on + strand, within Psyr_0557 at 631.913 kb on + strand, within Psyr_0557 at 631.952 kb on + strand, within Psyr_0557 at 631.952 kb on + strand, within Psyr_0557 at 631.952 kb on + strand, within Psyr_0557 at 631.952 kb on + strand, within Psyr_0557 at 631.952 kb on + strand, within Psyr_0557 at 631.953 kb on - strand, within Psyr_0557 at 631.953 kb on - strand, within Psyr_0557 at 631.953 kb on - strand, within Psyr_0557 at 631.953 kb on - strand, within Psyr_0557 at 632.225 kb on + strand at 632.225 kb on + strand at 632.225 kb on + strand at 632.226 kb on - strand at 632.226 kb on - strand at 632.226 kb on - strand at 632.405 kb on + strand at 632.405 kb on + strand at 632.405 kb on + strand at 632.405 kb on + strand at 632.405 kb on + strand at 632.405 kb on + strand at 632.405 kb on + strand at 632.406 kb on - strand at 632.406 kb on - strand at 632.406 kb on - strand at 632.406 kb on - strand at 632.406 kb on - strand at 632.406 kb on - strand at 632.429 kb on + strand at 632.429 kb on + strand at 632.429 kb on + strand at 632.429 kb on + strand at 632.429 kb on + strand at 632.429 kb on + strand at 632.430 kb on - strand at 632.430 kb on - strand at 632.563 kb on + strand, within Psyr_0558 at 632.564 kb on - strand, within Psyr_0558 at 632.592 kb on - strand, within Psyr_0558 at 632.686 kb on + strand, within Psyr_0558 at 632.687 kb on - strand, within Psyr_0558 at 632.746 kb on - strand, within Psyr_0558 at 632.829 kb on + strand, within Psyr_0558 at 632.916 kb on - strand, within Psyr_0558 at 633.074 kb on + strand, within Psyr_0558 at 633.074 kb on + strand, within Psyr_0558 at 633.074 kb on + strand, within Psyr_0558 at 633.129 kb on + strand, within Psyr_0558 at 633.129 kb on + strand, within Psyr_0558 at 633.130 kb on - strand, within Psyr_0558 at 633.255 kb on - strand, within Psyr_0558 at 633.255 kb on - strand, within Psyr_0558
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Phloretin 250 ug/ml remove 630,954 - -0.3 630,954 - -0.0 630,956 - -0.2 631,014 + -0.1 631,014 + -0.1 631,015 - -1.1 631,015 - +1.0 631,015 - -1.8 631,069 + -0.0 631,211 - Psyr_0557 0.16 -2.2 631,257 - Psyr_0557 0.20 -2.7 631,413 - Psyr_0557 0.32 +0.1 631,791 + Psyr_0557 0.62 -0.8 631,881 - Psyr_0557 0.70 +0.1 631,913 + Psyr_0557 0.72 +1.5 631,913 + Psyr_0557 0.72 +0.0 631,913 + Psyr_0557 0.72 -0.9 631,952 + Psyr_0557 0.75 -1.4 631,952 + Psyr_0557 0.75 -0.3 631,952 + Psyr_0557 0.75 -0.6 631,952 + Psyr_0557 0.75 -1.8 631,952 + Psyr_0557 0.75 -1.3 631,953 - Psyr_0557 0.75 +0.8 631,953 - Psyr_0557 0.75 +0.1 631,953 - Psyr_0557 0.75 -0.5 631,953 - Psyr_0557 0.75 -0.8 632,225 + +2.6 632,225 + +2.2 632,225 + -1.1 632,226 - +1.0 632,226 - -0.0 632,226 - +0.1 632,405 + -1.5 632,405 + +0.8 632,405 + -0.9 632,405 + -0.3 632,405 + -0.9 632,405 + +0.2 632,405 + -1.3 632,406 - +1.1 632,406 - +0.4 632,406 - -0.0 632,406 - +0.9 632,406 - -1.2 632,406 - -0.3 632,429 + -0.9 632,429 + -1.4 632,429 + -1.2 632,429 + -0.1 632,429 + +0.4 632,429 + +1.5 632,430 - -0.1 632,430 - +1.2 632,563 + Psyr_0558 0.13 +0.0 632,564 - Psyr_0558 0.13 +0.2 632,592 - Psyr_0558 0.15 +0.7 632,686 + Psyr_0558 0.20 +1.6 632,687 - Psyr_0558 0.20 -1.3 632,746 - Psyr_0558 0.23 -0.2 632,829 + Psyr_0558 0.28 +0.6 632,916 - Psyr_0558 0.33 -1.2 633,074 + Psyr_0558 0.42 +0.4 633,074 + Psyr_0558 0.42 +0.5 633,074 + Psyr_0558 0.42 -0.4 633,129 + Psyr_0558 0.45 +1.0 633,129 + Psyr_0558 0.45 +0.3 633,130 - Psyr_0558 0.45 +0.5 633,255 - Psyr_0558 0.52 -1.2 633,255 - Psyr_0558 0.52 -1.3
Or see this region's nucleotide sequence