Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0416

Experiment: KB with Phloretin 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0415 and Psyr_0416 are separated by 3 nucleotidesPsyr_0416 and Psyr_0417 are separated by 0 nucleotides Psyr_0415: Psyr_0415 - N-acyl-D-amino-acid deacylase, at 453,090 to 454,565 _0415 Psyr_0416: Psyr_0416 - transcriptional regulator, RpiR family, at 454,569 to 455,429 _0416 Psyr_0417: Psyr_0417 - gluconate permease GntT, at 455,430 to 456,779 _0417 Position (kb) 454 455 456Strain fitness (log2 ratio) -1 0 1 2 3at 453.588 kb on + strand, within Psyr_0415at 453.653 kb on + strand, within Psyr_0415at 453.653 kb on + strand, within Psyr_0415at 453.654 kb on - strand, within Psyr_0415at 453.725 kb on - strand, within Psyr_0415at 453.731 kb on - strand, within Psyr_0415at 453.864 kb on + strand, within Psyr_0415at 453.864 kb on + strand, within Psyr_0415at 453.864 kb on + strand, within Psyr_0415at 453.865 kb on - strand, within Psyr_0415at 453.928 kb on + strand, within Psyr_0415at 453.928 kb on + strand, within Psyr_0415at 453.928 kb on + strand, within Psyr_0415at 453.929 kb on - strand, within Psyr_0415at 453.929 kb on - strand, within Psyr_0415at 453.929 kb on - strand, within Psyr_0415at 453.929 kb on - strand, within Psyr_0415at 454.003 kb on + strand, within Psyr_0415at 454.210 kb on + strand, within Psyr_0415at 454.210 kb on + strand, within Psyr_0415at 454.210 kb on + strand, within Psyr_0415at 454.210 kb on + strand, within Psyr_0415at 454.558 kb on + strandat 454.558 kb on + strandat 454.559 kb on - strandat 454.606 kb on + strandat 454.606 kb on + strandat 454.607 kb on - strandat 454.607 kb on - strandat 454.731 kb on - strand, within Psyr_0416at 454.731 kb on - strand, within Psyr_0416at 454.732 kb on + strand, within Psyr_0416at 454.732 kb on + strand, within Psyr_0416at 454.732 kb on + strand, within Psyr_0416at 454.732 kb on + strand, within Psyr_0416at 454.732 kb on + strand, within Psyr_0416at 454.732 kb on + strand, within Psyr_0416at 454.732 kb on + strand, within Psyr_0416at 454.732 kb on + strand, within Psyr_0416at 454.732 kb on + strand, within Psyr_0416at 454.732 kb on + strand, within Psyr_0416at 454.732 kb on + strand, within Psyr_0416at 454.733 kb on - strand, within Psyr_0416at 454.733 kb on - strand, within Psyr_0416at 454.733 kb on - strand, within Psyr_0416at 454.733 kb on - strand, within Psyr_0416at 454.733 kb on - strand, within Psyr_0416at 454.733 kb on - strand, within Psyr_0416at 454.733 kb on - strand, within Psyr_0416at 454.733 kb on - strand, within Psyr_0416at 454.733 kb on - strand, within Psyr_0416at 454.831 kb on + strand, within Psyr_0416at 454.832 kb on - strand, within Psyr_0416at 454.832 kb on - strand, within Psyr_0416at 455.409 kb on + strandat 455.409 kb on + strandat 455.409 kb on + strandat 455.409 kb on + strandat 455.409 kb on + strandat 455.409 kb on + strandat 455.409 kb on + strandat 455.409 kb on + strandat 455.409 kb on + strandat 455.410 kb on - strandat 455.410 kb on - strandat 455.410 kb on - strandat 455.536 kb on + strandat 455.536 kb on + strandat 455.537 kb on - strandat 455.537 kb on - strandat 455.832 kb on + strand, within Psyr_0417at 455.833 kb on - strand, within Psyr_0417at 455.833 kb on - strand, within Psyr_0417at 455.833 kb on - strand, within Psyr_0417at 456.011 kb on + strand, within Psyr_0417at 456.012 kb on - strand, within Psyr_0417at 456.012 kb on - strand, within Psyr_0417at 456.181 kb on + strand, within Psyr_0417at 456.182 kb on - strand, within Psyr_0417at 456.182 kb on - strand, within Psyr_0417at 456.229 kb on + strand, within Psyr_0417at 456.229 kb on + strand, within Psyr_0417at 456.230 kb on - strand, within Psyr_0417at 456.230 kb on - strand, within Psyr_0417at 456.230 kb on - strand, within Psyr_0417at 456.259 kb on + strand, within Psyr_0417

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Phloretin 250 ug/ml
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453,588 + Psyr_0415 0.34 -0.0
453,653 + Psyr_0415 0.38 +0.3
453,653 + Psyr_0415 0.38 +0.9
453,654 - Psyr_0415 0.38 -0.1
453,725 - Psyr_0415 0.43 +0.3
453,731 - Psyr_0415 0.43 -0.0
453,864 + Psyr_0415 0.52 +0.9
453,864 + Psyr_0415 0.52 -1.1
453,864 + Psyr_0415 0.52 -0.5
453,865 - Psyr_0415 0.53 +0.9
453,928 + Psyr_0415 0.57 -1.2
453,928 + Psyr_0415 0.57 +0.1
453,928 + Psyr_0415 0.57 +0.5
453,929 - Psyr_0415 0.57 -0.2
453,929 - Psyr_0415 0.57 +0.7
453,929 - Psyr_0415 0.57 +0.2
453,929 - Psyr_0415 0.57 +1.5
454,003 + Psyr_0415 0.62 +0.5
454,210 + Psyr_0415 0.76 +1.2
454,210 + Psyr_0415 0.76 -0.2
454,210 + Psyr_0415 0.76 +0.3
454,210 + Psyr_0415 0.76 +0.2
454,558 + -0.5
454,558 + +0.5
454,559 - +1.9
454,606 + +3.2
454,606 + +1.1
454,607 - +1.1
454,607 - -0.4
454,731 - Psyr_0416 0.19 +0.4
454,731 - Psyr_0416 0.19 +0.5
454,732 + Psyr_0416 0.19 -0.4
454,732 + Psyr_0416 0.19 +1.5
454,732 + Psyr_0416 0.19 -0.7
454,732 + Psyr_0416 0.19 +0.8
454,732 + Psyr_0416 0.19 +1.9
454,732 + Psyr_0416 0.19 -0.3
454,732 + Psyr_0416 0.19 +1.3
454,732 + Psyr_0416 0.19 -0.7
454,732 + Psyr_0416 0.19 +0.7
454,732 + Psyr_0416 0.19 +0.1
454,732 + Psyr_0416 0.19 -0.1
454,733 - Psyr_0416 0.19 +0.3
454,733 - Psyr_0416 0.19 +1.6
454,733 - Psyr_0416 0.19 -1.4
454,733 - Psyr_0416 0.19 +0.1
454,733 - Psyr_0416 0.19 -1.1
454,733 - Psyr_0416 0.19 +0.2
454,733 - Psyr_0416 0.19 +0.9
454,733 - Psyr_0416 0.19 +1.1
454,733 - Psyr_0416 0.19 -0.4
454,831 + Psyr_0416 0.30 -0.4
454,832 - Psyr_0416 0.31 +1.2
454,832 - Psyr_0416 0.31 +0.7
455,409 + +0.2
455,409 + -0.8
455,409 + +0.9
455,409 + -0.0
455,409 + -0.2
455,409 + -0.1
455,409 + +0.2
455,409 + +0.3
455,409 + -1.3
455,410 - +1.1
455,410 - -0.5
455,410 - +0.7
455,536 + -0.4
455,536 + +0.1
455,537 - +1.9
455,537 - +0.1
455,832 + Psyr_0417 0.30 -0.1
455,833 - Psyr_0417 0.30 +0.1
455,833 - Psyr_0417 0.30 -0.5
455,833 - Psyr_0417 0.30 +1.0
456,011 + Psyr_0417 0.43 +0.3
456,012 - Psyr_0417 0.43 +1.1
456,012 - Psyr_0417 0.43 +2.2
456,181 + Psyr_0417 0.56 +0.7
456,182 - Psyr_0417 0.56 -0.4
456,182 - Psyr_0417 0.56 +0.7
456,229 + Psyr_0417 0.59 +0.1
456,229 + Psyr_0417 0.59 -0.5
456,230 - Psyr_0417 0.59 -0.8
456,230 - Psyr_0417 0.59 +1.1
456,230 - Psyr_0417 0.59 -0.2
456,259 + Psyr_0417 0.61 -1.1

Or see this region's nucleotide sequence