Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_854

Experiment: sodium fluoride 12.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_853 and Pf6N2E2_854 are separated by 427 nucleotidesPf6N2E2_854 and Pf6N2E2_855 are separated by 174 nucleotides Pf6N2E2_853 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 999,113 to 999,745 _853 Pf6N2E2_854 - Xylose isomerase domain protein TIM barrel, at 1,000,173 to 1,000,982 _854 Pf6N2E2_855 - Transcriptional regulator, IclR family, at 1,001,157 to 1,001,963 _855 Position (kb) 1000 1001Strain fitness (log2 ratio) -2 -1 0 1 2 3at 999.182 kb on + strand, within Pf6N2E2_853at 999.182 kb on + strand, within Pf6N2E2_853at 999.182 kb on + strand, within Pf6N2E2_853at 999.182 kb on + strand, within Pf6N2E2_853at 999.182 kb on + strand, within Pf6N2E2_853at 999.182 kb on + strand, within Pf6N2E2_853at 999.182 kb on + strand, within Pf6N2E2_853at 999.182 kb on + strand, within Pf6N2E2_853at 999.182 kb on + strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strandat 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.183 kb on - strand, within Pf6N2E2_853at 999.184 kb on + strand, within Pf6N2E2_853at 999.184 kb on + strand, within Pf6N2E2_853at 999.184 kb on + strand, within Pf6N2E2_853at 999.184 kb on + strand, within Pf6N2E2_853at 999.184 kb on + strand, within Pf6N2E2_853at 999.185 kb on - strand, within Pf6N2E2_853at 999.185 kb on - strand, within Pf6N2E2_853at 999.185 kb on - strand, within Pf6N2E2_853at 999.185 kb on - strand, within Pf6N2E2_853at 999.185 kb on - strand, within Pf6N2E2_853at 999.185 kb on - strand, within Pf6N2E2_853at 999.185 kb on - strand, within Pf6N2E2_853at 999.185 kb on - strand, within Pf6N2E2_853at 999.201 kb on + strand, within Pf6N2E2_853at 999.201 kb on + strand, within Pf6N2E2_853at 999.201 kb on + strand, within Pf6N2E2_853at 999.315 kb on + strand, within Pf6N2E2_853at 999.316 kb on - strand, within Pf6N2E2_853at 999.316 kb on - strand, within Pf6N2E2_853at 999.316 kb on - strand, within Pf6N2E2_853at 999.488 kb on - strand, within Pf6N2E2_853at 999.488 kb on - strand, within Pf6N2E2_853at 999.801 kb on - strandat 999.851 kb on - strandat 999.851 kb on - strandat 999.919 kb on + strandat 999.919 kb on + strandat 999.920 kb on - strandat 999.920 kb on - strandat 999.920 kb on - strandat 999.920 kb on - strandat 999.922 kb on - strandat 999.922 kb on - strandat 999.925 kb on + strandat 999.925 kb on + strandat 999.926 kb on - strandat 999.926 kb on - strandat 999.926 kb on - strandat 999.951 kb on - strandat 1000.029 kb on + strandat 1000.050 kb on + strandat 1000.050 kb on + strandat 1000.050 kb on + strandat 1000.051 kb on - strandat 1000.051 kb on - strandat 1000.051 kb on - strandat 1000.052 kb on + strandat 1000.052 kb on + strandat 1000.052 kb on + strandat 1000.052 kb on + strandat 1000.052 kb on + strandat 1000.053 kb on - strandat 1000.053 kb on - strandat 1000.053 kb on - strandat 1000.053 kb on - strandat 1000.053 kb on - strandat 1000.053 kb on - strandat 1000.053 kb on - strandat 1000.106 kb on + strandat 1000.117 kb on + strandat 1000.120 kb on + strandat 1000.195 kb on - strandat 1000.344 kb on + strand, within Pf6N2E2_854at 1000.412 kb on + strand, within Pf6N2E2_854at 1000.472 kb on + strand, within Pf6N2E2_854at 1000.472 kb on + strand, within Pf6N2E2_854at 1000.540 kb on - strand, within Pf6N2E2_854at 1000.551 kb on + strand, within Pf6N2E2_854at 1000.551 kb on + strand, within Pf6N2E2_854at 1000.603 kb on + strand, within Pf6N2E2_854at 1000.604 kb on - strand, within Pf6N2E2_854at 1000.624 kb on - strand, within Pf6N2E2_854at 1000.663 kb on + strand, within Pf6N2E2_854at 1000.663 kb on + strand, within Pf6N2E2_854at 1000.663 kb on + strand, within Pf6N2E2_854at 1000.663 kb on + strand, within Pf6N2E2_854at 1000.663 kb on + strand, within Pf6N2E2_854at 1000.663 kb on + strand, within Pf6N2E2_854at 1000.664 kb on - strand, within Pf6N2E2_854at 1000.664 kb on - strand, within Pf6N2E2_854at 1000.719 kb on + strand, within Pf6N2E2_854at 1000.719 kb on + strand, within Pf6N2E2_854at 1000.719 kb on + strand, within Pf6N2E2_854at 1000.719 kb on + strand, within Pf6N2E2_854at 1000.719 kb on + strand, within Pf6N2E2_854at 1000.719 kb on + strand, within Pf6N2E2_854at 1000.720 kb on - strand, within Pf6N2E2_854at 1000.720 kb on - strand, within Pf6N2E2_854at 1000.755 kb on + strand, within Pf6N2E2_854at 1000.755 kb on + strand, within Pf6N2E2_854at 1000.755 kb on + strand, within Pf6N2E2_854at 1000.755 kb on + strand, within Pf6N2E2_854at 1000.804 kb on + strand, within Pf6N2E2_854at 1000.804 kb on + strand, within Pf6N2E2_854at 1000.804 kb on + strand, within Pf6N2E2_854at 1000.805 kb on - strand, within Pf6N2E2_854at 1000.805 kb on - strand, within Pf6N2E2_854at 1000.835 kb on - strand, within Pf6N2E2_854at 1000.835 kb on - strand, within Pf6N2E2_854at 1000.895 kb on - strand, within Pf6N2E2_854at 1000.926 kb on + strandat 1000.926 kb on + strandat 1000.926 kb on + strandat 1001.069 kb on + strandat 1001.218 kb on - strandat 1001.347 kb on - strand, within Pf6N2E2_855at 1001.548 kb on - strand, within Pf6N2E2_855at 1001.548 kb on - strand, within Pf6N2E2_855at 1001.819 kb on - strand, within Pf6N2E2_855

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 12.5 mM
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999,182 + Pf6N2E2_853 0.11 +0.1
999,182 + Pf6N2E2_853 0.11 +0.1
999,182 + Pf6N2E2_853 0.11 -0.3
999,182 + Pf6N2E2_853 0.11 -0.9
999,182 + Pf6N2E2_853 0.11 -0.4
999,182 + Pf6N2E2_853 0.11 -0.9
999,182 + Pf6N2E2_853 0.11 -0.2
999,182 + Pf6N2E2_853 0.11 +1.6
999,182 + Pf6N2E2_853 0.11 +0.9
999,183 - Pf6N2E2_853 0.11 +0.5
999,183 - Pf6N2E2_853 0.11 +0.4
999,183 - Pf6N2E2_853 0.11 +0.5
999,183 - Pf6N2E2_853 0.11 -0.3
999,183 - Pf6N2E2_853 0.11 -0.1
999,183 - Pf6N2E2_853 0.11 -0.1
999,183 - Pf6N2E2_853 0.11 +0.1
999,183 - Pf6N2E2_853 0.11 -0.2
999,183 - Pf6N2E2_853 0.11 +0.5
999,183 - Pf6N2E2_853 0.11 -0.6
999,183 - Pf6N2E2_853 0.11 +0.7
999,183 - Pf6N2E2_853 0.11 +0.8
999,183 - +1.1
999,183 - Pf6N2E2_853 0.11 -0.7
999,183 - Pf6N2E2_853 0.11 +0.4
999,183 - Pf6N2E2_853 0.11 -0.2
999,183 - Pf6N2E2_853 0.11 +0.3
999,183 - Pf6N2E2_853 0.11 +0.8
999,183 - Pf6N2E2_853 0.11 -1.5
999,183 - Pf6N2E2_853 0.11 +0.4
999,183 - Pf6N2E2_853 0.11 +0.3
999,183 - Pf6N2E2_853 0.11 -0.5
999,183 - Pf6N2E2_853 0.11 +0.1
999,183 - Pf6N2E2_853 0.11 -0.7
999,183 - Pf6N2E2_853 0.11 +0.1
999,183 - Pf6N2E2_853 0.11 -0.9
999,183 - Pf6N2E2_853 0.11 -0.8
999,183 - Pf6N2E2_853 0.11 +0.4
999,183 - Pf6N2E2_853 0.11 +0.3
999,183 - Pf6N2E2_853 0.11 -0.2
999,183 - Pf6N2E2_853 0.11 +0.1
999,183 - Pf6N2E2_853 0.11 +0.3
999,183 - Pf6N2E2_853 0.11 -0.9
999,183 - Pf6N2E2_853 0.11 -0.1
999,183 - Pf6N2E2_853 0.11 +0.2
999,183 - Pf6N2E2_853 0.11 -0.5
999,184 + Pf6N2E2_853 0.11 +0.3
999,184 + Pf6N2E2_853 0.11 +0.2
999,184 + Pf6N2E2_853 0.11 +0.1
999,184 + Pf6N2E2_853 0.11 -0.2
999,184 + Pf6N2E2_853 0.11 +1.1
999,185 - Pf6N2E2_853 0.11 +0.6
999,185 - Pf6N2E2_853 0.11 -0.9
999,185 - Pf6N2E2_853 0.11 +2.3
999,185 - Pf6N2E2_853 0.11 +1.1
999,185 - Pf6N2E2_853 0.11 +0.2
999,185 - Pf6N2E2_853 0.11 -0.1
999,185 - Pf6N2E2_853 0.11 -0.7
999,185 - Pf6N2E2_853 0.11 +0.9
999,201 + Pf6N2E2_853 0.14 +0.4
999,201 + Pf6N2E2_853 0.14 +0.4
999,201 + Pf6N2E2_853 0.14 +0.1
999,315 + Pf6N2E2_853 0.32 +0.2
999,316 - Pf6N2E2_853 0.32 +0.1
999,316 - Pf6N2E2_853 0.32 +0.2
999,316 - Pf6N2E2_853 0.32 +1.8
999,488 - Pf6N2E2_853 0.59 -0.1
999,488 - Pf6N2E2_853 0.59 -0.0
999,801 - -0.1
999,851 - +0.6
999,851 - -0.7
999,919 + -0.2
999,919 + +0.9
999,920 - -0.9
999,920 - +0.7
999,920 - +0.4
999,920 - -0.6
999,922 - -0.5
999,922 - +0.5
999,925 + +1.0
999,925 + -1.5
999,926 - +0.3
999,926 - +0.9
999,926 - +0.2
999,951 - +0.1
1,000,029 + +1.2
1,000,050 + +0.5
1,000,050 + +0.3
1,000,050 + +0.7
1,000,051 - -0.1
1,000,051 - -0.2
1,000,051 - -0.2
1,000,052 + +0.8
1,000,052 + +0.9
1,000,052 + -0.4
1,000,052 + -0.0
1,000,052 + +0.5
1,000,053 - -0.5
1,000,053 - +0.8
1,000,053 - -0.5
1,000,053 - -0.6
1,000,053 - -0.4
1,000,053 - +0.2
1,000,053 - +1.0
1,000,106 + -0.2
1,000,117 + -2.1
1,000,120 + +0.0
1,000,195 - +1.1
1,000,344 + Pf6N2E2_854 0.21 +0.8
1,000,412 + Pf6N2E2_854 0.30 +3.1
1,000,472 + Pf6N2E2_854 0.37 -0.8
1,000,472 + Pf6N2E2_854 0.37 +0.5
1,000,540 - Pf6N2E2_854 0.45 +0.4
1,000,551 + Pf6N2E2_854 0.47 +0.6
1,000,551 + Pf6N2E2_854 0.47 -1.3
1,000,603 + Pf6N2E2_854 0.53 +1.1
1,000,604 - Pf6N2E2_854 0.53 +0.2
1,000,624 - Pf6N2E2_854 0.56 +0.9
1,000,663 + Pf6N2E2_854 0.60 +0.4
1,000,663 + Pf6N2E2_854 0.60 +0.2
1,000,663 + Pf6N2E2_854 0.60 +1.2
1,000,663 + Pf6N2E2_854 0.60 +0.4
1,000,663 + Pf6N2E2_854 0.60 -0.1
1,000,663 + Pf6N2E2_854 0.60 +0.4
1,000,664 - Pf6N2E2_854 0.61 +0.8
1,000,664 - Pf6N2E2_854 0.61 +0.5
1,000,719 + Pf6N2E2_854 0.67 -1.2
1,000,719 + Pf6N2E2_854 0.67 +0.4
1,000,719 + Pf6N2E2_854 0.67 +0.3
1,000,719 + Pf6N2E2_854 0.67 +0.6
1,000,719 + Pf6N2E2_854 0.67 +0.7
1,000,719 + Pf6N2E2_854 0.67 -0.9
1,000,720 - Pf6N2E2_854 0.68 +1.7
1,000,720 - Pf6N2E2_854 0.68 -0.8
1,000,755 + Pf6N2E2_854 0.72 +0.5
1,000,755 + Pf6N2E2_854 0.72 +1.5
1,000,755 + Pf6N2E2_854 0.72 +1.1
1,000,755 + Pf6N2E2_854 0.72 +1.1
1,000,804 + Pf6N2E2_854 0.78 +0.6
1,000,804 + Pf6N2E2_854 0.78 +0.2
1,000,804 + Pf6N2E2_854 0.78 -0.5
1,000,805 - Pf6N2E2_854 0.78 +1.0
1,000,805 - Pf6N2E2_854 0.78 +0.8
1,000,835 - Pf6N2E2_854 0.82 +0.3
1,000,835 - Pf6N2E2_854 0.82 +1.0
1,000,895 - Pf6N2E2_854 0.89 +0.2
1,000,926 + -0.1
1,000,926 + +0.2
1,000,926 + +0.0
1,001,069 + +0.4
1,001,218 - +0.6
1,001,347 - Pf6N2E2_855 0.24 +0.1
1,001,548 - Pf6N2E2_855 0.48 -0.5
1,001,548 - Pf6N2E2_855 0.48 +0.2
1,001,819 - Pf6N2E2_855 0.82 -1.0

Or see this region's nucleotide sequence