Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS06160

Experiment: Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 FREE

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 FREE
1,141,495	-		MMJJ_RS06150	0.35	-2.0
1,141,495	-		MMJJ_RS06150	0.35	-1.6
1,141,548	-		MMJJ_RS06150	0.45	-1.7
1,141,555	-		MMJJ_RS06150	0.46	-0.6
1,141,640	+		MMJJ_RS06150	0.61	-2.7
1,141,671	-		MMJJ_RS06150	0.67	-2.9
1,141,739	-		MMJJ_RS06150	0.79	+1.3
1,141,741	-		MMJJ_RS06150	0.80	-1.5
1,141,742	+		MMJJ_RS06150	0.80	-2.7
1,141,815	-				-0.7
1,141,815	-				+1.0
1,141,825	+				+0.4
1,141,835	+				+0.4
1,141,884	+				-0.2
1,141,884	+				-1.6
1,141,885	-				+0.2
1,141,885	-				-0.4
1,141,885	-				-0.3
1,141,885	-				-0.1
1,141,885	-				+0.1
1,141,886	+				-2.7
1,141,886	+				-1.1
1,141,886	+				-0.6
1,141,887	-				+1.6
1,141,887	-				-1.6
1,141,887	-				+1.0
1,141,887	-				-1.4
1,141,887	-				-1.5
1,141,888	+				-3.0
1,141,888	+				-2.1
1,141,888	+				-1.7
1,141,890	-				-1.1
1,141,890	-				+1.6
1,141,890	-				+0.4
1,141,890	-				-1.8
1,141,896	-				+1.5
1,141,897	+				-3.6
1,141,897	+				-1.9
1,141,897	+				-1.3
1,141,902	-				-0.4
1,141,902	-				+0.8
1,141,902	-				+1.1
1,141,902	-				-0.8
1,141,903	+				-2.1
1,141,903	+				-3.3
1,141,903	+				-2.5
1,141,903	+				-2.5
1,141,903	+				-1.7
1,141,905	-				-0.7
1,141,915	-				-0.1
1,141,930	+				-0.1
1,141,937	-				+0.1
1,141,938	+				+1.4
1,142,000	-		MMJJ_RS06155	0.13	-2.7
1,142,001	+		MMJJ_RS06155	0.13	-3.6
1,142,026	-		MMJJ_RS06155	0.18	-1.1
1,142,027	+		MMJJ_RS06155	0.19	-0.1
1,142,108	+		MMJJ_RS06155	0.35	-3.1
1,142,109	-		MMJJ_RS06155	0.35	-3.1
1,142,130	+		MMJJ_RS06155	0.40	-2.6
1,142,191	-		MMJJ_RS06155	0.52	-4.1
1,142,192	+		MMJJ_RS06155	0.52	-3.6
1,142,192	+		MMJJ_RS06155	0.52	-3.0
1,142,211	-		MMJJ_RS06155	0.56	-2.5
1,142,266	-		MMJJ_RS06155	0.67	-3.7
1,142,295	-		MMJJ_RS06155	0.73	-3.5
1,142,303	-				-0.1
1,142,304	+		MMJJ_RS06155	0.75	-3.0
1,142,304	+		MMJJ_RS06155	0.75	-2.7
1,142,487	-				-1.3
1,142,498	+				-2.2
1,142,557	+		MMJJ_RS06160	0.19	-0.3
1,142,560	-				-0.2
1,142,561	+		MMJJ_RS06160	0.20	+1.3
1,142,568	+		MMJJ_RS06160	0.21	+0.1
1,142,606	-		MMJJ_RS06160	0.27	+0.7
1,142,650	-		MMJJ_RS06160	0.35	+0.8
1,142,690	+		MMJJ_RS06160	0.42	-0.9
1,142,710	-		MMJJ_RS06160	0.45	+0.0
1,142,710	-		MMJJ_RS06160	0.45	+2.7
1,142,714	-		MMJJ_RS06160	0.46	+1.1
1,142,714	-		MMJJ_RS06160	0.46	+0.7
1,142,714	-		MMJJ_RS06160	0.46	-0.5
1,142,714	-		MMJJ_RS06160	0.46	-0.1
1,142,714	-		MMJJ_RS06160	0.46	+0.3
1,142,715	+		MMJJ_RS06160	0.46	-0.7
1,142,715	+		MMJJ_RS06160	0.46	+0.1
1,142,715	+		MMJJ_RS06160	0.46	+2.6
1,142,715	+		MMJJ_RS06160	0.46	+0.4
1,142,715	+		MMJJ_RS06160	0.46	-0.2
1,142,716	-		MMJJ_RS06160	0.46	+0.4
1,142,716	-		MMJJ_RS06160	0.46	-0.2
1,142,717	+		MMJJ_RS06160	0.46	+1.8
1,142,717	+		MMJJ_RS06160	0.46	+0.3
1,142,717	+		MMJJ_RS06160	0.46	+0.2
1,142,717	+		MMJJ_RS06160	0.46	-0.6
1,142,717	+		MMJJ_RS06160	0.46	+0.5
1,142,717	+		MMJJ_RS06160	0.46	+0.7
1,142,717	+		MMJJ_RS06160	0.46	+2.6
1,142,717	+		MMJJ_RS06160	0.46	+0.7
1,142,722	-		MMJJ_RS06160	0.47	-0.4
1,142,723	+		MMJJ_RS06160	0.47	-0.2
1,142,723	+		MMJJ_RS06160	0.47	-0.1
1,142,723	+		MMJJ_RS06160	0.47	+0.0
1,142,723	+		MMJJ_RS06160	0.47	-0.6
1,142,737	-		MMJJ_RS06160	0.50	-0.6
1,142,740	+		MMJJ_RS06160	0.50	-0.1
1,142,740	+		MMJJ_RS06160	0.50	+0.3
1,142,740	+		MMJJ_RS06160	0.50	+0.4
1,142,740	+		MMJJ_RS06160	0.50	-0.7
1,142,752	+		MMJJ_RS06160	0.52	+0.3
1,142,772	+		MMJJ_RS06160	0.55	+1.2
1,142,812	+		MMJJ_RS06160	0.62	+2.6
1,142,861	+		MMJJ_RS06160	0.71	+1.0
1,142,874	-		MMJJ_RS06160	0.73	-0.3
1,142,887	-		MMJJ_RS06160	0.75	+0.0
1,142,888	+		MMJJ_RS06160	0.75	+0.4
1,142,888	+		MMJJ_RS06160	0.75	-0.5
1,142,890	+		MMJJ_RS06160	0.75	-1.4
1,142,890	+		MMJJ_RS06160	0.75	-0.5
1,142,927	-		MMJJ_RS06160	0.82	+0.2
1,142,967	-		MMJJ_RS06160	0.88	+1.1
1,142,967	-		MMJJ_RS06160	0.88	-0.1
1,142,970	-		MMJJ_RS06160	0.89	+1.1
1,142,971	+		MMJJ_RS06160	0.89	+0.1
1,142,971	+		MMJJ_RS06160	0.89	-0.3
1,142,976	-				+1.3
1,142,991	-				+0.0
1,142,991	-				+1.2
1,142,997	-				+0.7
1,142,997	-				+2.0
1,142,997	-				+1.3
1,143,003	-				-0.2
1,143,004	+				-0.2
1,143,015	-				+1.6
1,143,015	-				-0.2
1,143,015	-				+0.4
1,143,016	+				+0.8
1,143,022	-				+0.2
1,143,028	+				-0.3
1,143,028	+				-0.4
1,143,032	-				+0.5
1,143,035	-				-0.7
1,143,041	+				-2.5
1,143,041	+				-0.4
1,143,041	+				-0.0
1,143,050	-				-1.2
1,143,051	+				+0.1
1,143,111	-				-2.3
1,143,118	-				-0.4
1,143,127	-				-1.5
1,143,132	-				-3.4
1,143,132	-				-1.3
1,143,133	+				-0.2
1,143,139	-				-1.0
1,143,140	+				-3.0
1,143,300	-		MMJJ_RS06165	0.12	-2.6
1,143,388	+		MMJJ_RS06165	0.17	-3.2
1,143,413	+		MMJJ_RS06165	0.18	-2.5
1,143,451	-		MMJJ_RS06165	0.21	-0.2
1,143,482	+		MMJJ_RS06165	0.23	-0.9
1,143,482	+		MMJJ_RS06165	0.23	-0.7
1,143,483	-		MMJJ_RS06165	0.23	-0.7
1,143,540	-		MMJJ_RS06165	0.26	-1.4
1,143,549	-		MMJJ_RS06165	0.27	-0.4
1,143,564	-		MMJJ_RS06165	0.28	-4.4
1,143,565	+		MMJJ_RS06165	0.28	-1.4
1,143,565	+		MMJJ_RS06165	0.28	-2.0
1,143,567	-		MMJJ_RS06165	0.28	-2.5
1,143,568	+		MMJJ_RS06165	0.28	-0.9
1,143,583	+		MMJJ_RS06165	0.29	-1.0
1,143,608	+				-0.2
1,143,634	-		MMJJ_RS06165	0.32	-1.5
1,143,654	+		MMJJ_RS06165	0.33	-3.0
1,143,671	+		MMJJ_RS06165	0.34	-2.3
1,143,679	-		MMJJ_RS06165	0.35	-1.3
1,143,680	+		MMJJ_RS06165	0.35	+1.8
1,143,771	+		MMJJ_RS06165	0.41	-1.6
1,143,782	-		MMJJ_RS06165	0.41	-2.5
1,143,783	+		MMJJ_RS06165	0.41	+0.1
1,143,788	-		MMJJ_RS06165	0.42	-1.7
1,143,815	+		MMJJ_RS06165	0.43	-2.5
1,143,858	-		MMJJ_RS06165	0.46	-0.8
1,143,859	+		MMJJ_RS06165	0.46	-1.9
1,143,890	-		MMJJ_RS06165	0.48	-2.0
1,143,890	-		MMJJ_RS06165	0.48	-0.9
1,143,891	+		MMJJ_RS06165	0.48	-0.6
1,143,891	+		MMJJ_RS06165	0.48	-2.7
1,143,899	+		MMJJ_RS06165	0.49	-2.3
1,143,899	+		MMJJ_RS06165	0.49	-3.9
1,143,899	+		MMJJ_RS06165	0.49	-0.1
1,143,904	-		MMJJ_RS06165	0.49	-0.6
1,143,905	+		MMJJ_RS06165	0.49	-2.4
1,143,940	+		MMJJ_RS06165	0.51	-1.9
1,143,964	-		MMJJ_RS06165	0.53	-1.1
1,143,975	+		MMJJ_RS06165	0.53	-2.0
1,143,995	+		MMJJ_RS06165	0.54	-2.0
1,144,009	-		MMJJ_RS06165	0.55	-1.3
1,144,027	-		MMJJ_RS06165	0.56	-1.5