Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS14350

Experiment: R2A with Selective_ion_mix_1 1 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Selective_ion_mix_1 1 X
3,193,648	-				-2.1
3,193,648	-				-0.5
3,193,648	-				-0.5
3,193,648	-				-0.7
3,193,648	-				+0.4
3,193,648	-				+0.1
3,193,648	-				+0.2
3,193,648	-				-0.3
3,193,648	-				-0.2
3,193,648	-				+0.1
3,193,648	-				-0.7
3,193,648	-				+0.4
3,193,648	-				-0.6
3,193,648	-				-1.1
3,193,648	-				+2.1
3,193,648	-				-0.6
3,193,648	-				+0.3
3,193,648	-				-2.5
3,193,648	-				+0.5
3,193,648	-				+0.1
3,193,676	+				+0.1
3,193,676	+				+1.4
3,193,676	+				-1.7
3,193,676	+				-1.3
3,193,676	+				+0.9
3,193,676	+				-1.2
3,193,676	+				-2.3
3,193,676	+				+1.1
3,193,676	+				+0.6
3,193,676	+				-0.6
3,193,676	+				+0.7
3,193,676	+				-2.1
3,193,676	+				+2.1
3,193,676	+				-0.5
3,193,676	+				+2.3
3,193,676	+				-0.5
3,193,676	+				+1.7
3,193,676	+				-0.3
3,193,676	+				-1.3
3,193,676	+				+0.1
3,193,676	+				+2.0
3,193,676	+				+1.3
3,193,676	+				+0.1
3,193,676	+				-0.3
3,193,676	+				+1.6
3,193,676	+				-2.3
3,193,676	+				-0.5
3,193,676	+				-1.4
3,193,677	-				-1.3
3,193,677	-				-0.4
3,193,677	-				+0.8
3,193,677	-				-0.7
3,193,677	-				-2.3
3,193,677	-				-0.5
3,193,677	-				-2.4
3,193,677	-				+0.7
3,193,677	-				+0.6
3,193,677	-				+1.3
3,193,677	-				+1.5
3,193,677	-				+0.6
3,193,677	-				+1.6
3,193,677	-				+0.0
3,193,677	-				-0.6
3,193,677	-				-0.4
3,193,677	-				-0.5
3,193,677	-				-1.2
3,193,677	-				-2.0
3,193,677	-				+1.3
3,193,677	-				-2.0
3,193,677	-				-0.5
3,193,677	-				+0.6
3,193,677	-				+0.2
3,193,677	-				-0.3
3,193,677	-				+0.9
3,193,677	-				-0.3
3,193,763	+				-0.3
3,193,763	+				+0.8
3,193,763	+				+1.2
3,193,763	+				-1.3
3,193,763	+				-0.1
3,193,763	+				-1.7
3,193,764	-				-0.9
3,194,162	+		LRK54_RS14345	0.39	+0.4
3,194,162	+		LRK54_RS14345	0.39	+0.2
3,194,162	+		LRK54_RS14345	0.39	-0.9
3,194,162	+		LRK54_RS14345	0.39	+0.3
3,194,162	+		LRK54_RS14345	0.39	-1.5
3,194,162	+		LRK54_RS14345	0.39	-0.8
3,194,163	-		LRK54_RS14345	0.39	-0.2
3,194,163	-		LRK54_RS14345	0.39	-0.6
3,194,163	-		LRK54_RS14345	0.39	-0.8
3,194,163	-		LRK54_RS14345	0.39	-1.4
3,194,163	-		LRK54_RS14345	0.39	-0.1
3,194,163	-		LRK54_RS14345	0.39	+1.3
3,194,163	-		LRK54_RS14345	0.39	+0.2
3,194,163	-		LRK54_RS14345	0.39	-0.0
3,194,399	+		LRK54_RS14345	0.71	-0.5
3,194,399	+		LRK54_RS14345	0.71	+1.3
3,194,400	-		LRK54_RS14345	0.71	+1.7
3,194,400	-		LRK54_RS14345	0.71	-1.2
3,194,400	-		LRK54_RS14345	0.71	+2.4
3,194,641	+				-2.1
3,194,641	+				+0.2
3,194,641	+				-0.1
3,194,641	+				-0.5
3,194,641	+				+0.2
3,194,641	+				+1.8
3,194,641	+				-2.8
3,194,641	+				-0.1
3,194,641	+				-0.1
3,194,641	+				+0.8
3,194,641	+				+1.1
3,194,641	+				+0.1
3,194,641	+				+0.6
3,194,641	+				-1.3
3,194,641	+				-1.2
3,194,641	+				-0.9
3,194,641	+				-0.3
3,194,641	+				-0.2
3,194,641	+				-1.9
3,194,641	+				-1.8
3,194,642	-				-0.7
3,194,642	-				-1.4
3,194,642	-				-0.1
3,194,642	-				+0.8
3,194,642	-				+0.0
3,194,642	-				-0.5
3,194,642	-				+1.0
3,194,642	-				-2.1
3,194,642	-				+1.1
3,194,642	-				-1.1
3,194,642	-				-1.1
3,194,642	-				+1.4
3,194,642	-				-0.5
3,194,642	-				-0.4
3,194,642	-				+1.0
3,194,642	-				+0.9
3,194,642	-				+0.6
3,194,642	-				+0.3
3,194,642	-				-1.2
3,194,642	-				+1.4
3,194,642	-				-0.7
3,194,642	-				+1.6
3,194,642	-				+0.5
3,194,642	-				+0.2
3,194,642	-				+2.1
3,194,642	-				+1.3
3,194,642	-				+0.5
3,194,642	-				+1.6
3,194,642	-				-0.4
3,194,642	-				-1.2
3,194,649	+				-1.1
3,194,649	+				-1.5
3,194,649	+				+0.4
3,194,649	+				-3.1
3,194,649	+				-0.9
3,194,649	+				-0.8
3,194,649	+				-1.1
3,194,649	+				+0.1
3,194,649	+				-2.2
3,194,649	+				+1.6
3,194,649	+				-0.5
3,194,649	+				-0.8
3,194,650	-				-1.5
3,194,650	-				-0.5
3,194,650	-				-1.2
3,194,650	-				-1.1
3,194,650	-				+0.6
3,194,650	-				+1.2
3,194,650	-				-1.1
3,194,650	-				+0.1
3,194,650	-				-0.2
3,194,650	-				+0.9
3,194,650	-				-2.1
3,194,650	-				-1.2
3,194,650	-				-2.2
3,194,650	-				-0.8
3,194,741	+		LRK54_RS14350	0.15	-1.3
3,194,741	+		LRK54_RS14350	0.15	-0.8
3,194,741	+		LRK54_RS14350	0.15	-0.2
3,194,741	+		LRK54_RS14350	0.15	-0.5
3,194,741	+		LRK54_RS14350	0.15	-1.7
3,194,741	+		LRK54_RS14350	0.15	-0.2
3,194,742	-		LRK54_RS14350	0.15	+1.3
3,194,742	-		LRK54_RS14350	0.15	+1.0
3,194,742	-		LRK54_RS14350	0.15	-0.8
3,194,742	-		LRK54_RS14350	0.15	-1.0
3,194,742	-		LRK54_RS14350	0.15	-0.9
3,195,249	+				+0.1
3,195,249	+				-2.4
3,195,249	+				-0.1
3,195,249	+				+0.3
3,195,249	+				-0.2
3,195,249	+				+0.3
3,195,249	+				+0.6
3,195,249	+				+0.9
3,195,249	+				-2.6
3,195,249	+				+0.2
3,195,249	+				-0.4
3,195,250	-				-0.3
3,195,250	-				-0.1
3,195,250	-				-0.5
3,195,250	-				+0.5
3,195,250	-				-1.8
3,195,250	-				-0.4
3,195,250	-				+1.1
3,195,250	-				+1.1
3,195,250	-				-0.3
3,195,250	-				+0.0
3,195,250	-				-1.2
3,195,250	-				-0.4
3,195,338	+				-1.6
3,195,339	-				-0.9
3,195,365	+				+1.6
3,195,369	-				-0.1
3,195,376	-				+0.2
3,195,556	+		LRK54_RS14355	0.18	+0.8
3,195,556	+		LRK54_RS14355	0.18	-0.8
3,195,556	+		LRK54_RS14355	0.18	-0.1
3,195,556	+		LRK54_RS14355	0.18	-1.6
3,195,556	+		LRK54_RS14355	0.18	+0.8
3,195,556	+		LRK54_RS14355	0.18	-0.7
3,195,556	+		LRK54_RS14355	0.18	-1.8
3,195,556	+		LRK54_RS14355	0.18	-2.2
3,195,556	+		LRK54_RS14355	0.18	-0.2
3,195,556	+		LRK54_RS14355	0.18	+0.2
3,195,556	+		LRK54_RS14355	0.18	-0.5
3,195,556	+		LRK54_RS14355	0.18	+0.9
3,195,556	+		LRK54_RS14355	0.18	-1.0
3,195,557	-		LRK54_RS14355	0.19	-3.2
3,195,557	-		LRK54_RS14355	0.19	+1.2
3,195,557	-		LRK54_RS14355	0.19	-1.0
3,195,557	-		LRK54_RS14355	0.19	+0.6
3,195,557	-		LRK54_RS14355	0.19	+0.6
3,195,557	-		LRK54_RS14355	0.19	+1.8
3,195,557	-		LRK54_RS14355	0.19	-0.7
3,195,557	-		LRK54_RS14355	0.19	-1.5
3,195,557	-		LRK54_RS14355	0.19	+0.0
3,195,557	-		LRK54_RS14355	0.19	-1.2
3,195,557	-		LRK54_RS14355	0.19	-0.8
3,195,557	-		LRK54_RS14355	0.19	-0.8
3,195,557	-		LRK54_RS14355	0.19	+1.2
3,195,557	-		LRK54_RS14355	0.19	-0.8
3,195,681	+		LRK54_RS14355	0.32	-1.5
3,195,681	+		LRK54_RS14355	0.32	-0.2
3,195,682	-		LRK54_RS14355	0.33	-1.3
3,195,701	+		LRK54_RS14355	0.35	-1.8
3,195,701	+		LRK54_RS14355	0.35	+0.5
3,195,701	+		LRK54_RS14355	0.35	-0.8
3,195,701	+		LRK54_RS14355	0.35	+1.7
3,195,701	+		LRK54_RS14355	0.35	-0.3
3,195,701	+		LRK54_RS14355	0.35	-1.3
3,195,701	+		LRK54_RS14355	0.35	+0.3
3,195,701	+		LRK54_RS14355	0.35	+1.6
3,195,701	+		LRK54_RS14355	0.35	-1.0
3,195,701	+		LRK54_RS14355	0.35	+1.2
3,195,701	+		LRK54_RS14355	0.35	+0.0
3,195,701	+		LRK54_RS14355	0.35	+3.4
3,195,701	+		LRK54_RS14355	0.35	+2.1
3,195,701	+		LRK54_RS14355	0.35	+0.4
3,195,701	+		LRK54_RS14355	0.35	+0.7
3,195,701	+		LRK54_RS14355	0.35	-0.4
3,195,701	+		LRK54_RS14355	0.35	+0.2
3,195,701	+		LRK54_RS14355	0.35	-0.7
3,195,702	-		LRK54_RS14355	0.35	+0.1
3,195,702	-		LRK54_RS14355	0.35	-0.6
3,195,702	-		LRK54_RS14355	0.35	-0.7
3,195,702	-		LRK54_RS14355	0.35	-1.1
3,195,702	-		LRK54_RS14355	0.35	-0.5
3,195,702	-		LRK54_RS14355	0.35	+0.1
3,195,702	-		LRK54_RS14355	0.35	+0.3
3,195,702	-		LRK54_RS14355	0.35	+0.2
3,195,702	-		LRK54_RS14355	0.35	-0.9
3,195,702	-		LRK54_RS14355	0.35	-0.9
3,195,702	-		LRK54_RS14355	0.35	-0.9
3,195,702	-		LRK54_RS14355	0.35	-1.1
3,195,702	-		LRK54_RS14355	0.35	-2.3
3,195,702	-		LRK54_RS14355	0.35	-1.9
3,195,702	-		LRK54_RS14355	0.35	+1.2
3,195,702	-		LRK54_RS14355	0.35	-1.5
3,195,702	-		LRK54_RS14355	0.35	-0.2
3,195,702	-		LRK54_RS14355	0.35	+1.0
3,195,702	-		LRK54_RS14355	0.35	-0.7
3,195,702	-		LRK54_RS14355	0.35	-0.9
3,195,702	-		LRK54_RS14355	0.35	-0.3
3,195,914	+		LRK54_RS14355	0.59	-2.5
3,195,915	+		LRK54_RS14355	0.59	+0.4
3,195,915	+		LRK54_RS14355	0.59	-1.5
3,195,915	+		LRK54_RS14355	0.59	+0.0
3,195,915	+		LRK54_RS14355	0.59	-1.3
3,195,916	-		LRK54_RS14355	0.59	+2.3
3,195,916	-		LRK54_RS14355	0.59	-1.1
3,195,916	-		LRK54_RS14355	0.59	+0.1
3,195,929	+		LRK54_RS14355	0.60	-0.9
3,195,929	+		LRK54_RS14355	0.60	-1.4
3,195,929	+		LRK54_RS14355	0.60	-1.4
3,195,929	+		LRK54_RS14355	0.60	-0.4
3,195,929	+		LRK54_RS14355	0.60	-0.5
3,195,929	+		LRK54_RS14355	0.60	-0.4
3,195,930	-		LRK54_RS14355	0.60	+0.4
3,196,229	+				+0.3
3,196,229	+				+1.0
3,196,229	+				-1.4
3,196,229	+				-0.8
3,196,230	-				+2.6
3,196,230	-				-1.7
3,196,230	-				+0.3