Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS10695

Experiment: R2A with Selective_ion_mix_1 1 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Selective_ion_mix_1 1 X
2,365,720	+				+0.7
2,365,721	-				-0.6
2,365,721	-				+2.2
2,365,721	-				+0.5
2,365,764	+				-1.3
2,365,764	+				-1.6
2,365,764	+				-0.2
2,365,764	+				+0.8
2,365,764	+				-1.3
2,365,764	+				-0.3
2,365,764	+				-0.6
2,365,764	+				-0.8
2,365,764	+				+0.0
2,365,765	-				-1.7
2,365,765	-				+0.3
2,365,765	-				+0.6
2,365,765	-				+0.4
2,365,765	-				+0.0
2,365,765	-				-0.8
2,365,765	-				-1.3
2,365,976	+		LRK54_RS10695	0.18	-2.5
2,365,976	+		LRK54_RS10695	0.18	-0.1
2,365,976	+		LRK54_RS10695	0.18	+0.5
2,365,977	-		LRK54_RS10695	0.18	-0.8
2,365,977	-		LRK54_RS10695	0.18	+0.1
2,365,977	-		LRK54_RS10695	0.18	-1.0
2,365,977	-		LRK54_RS10695	0.18	-0.1
2,365,977	-		LRK54_RS10695	0.18	-0.8
2,365,977	-		LRK54_RS10695	0.18	+0.1
2,365,977	-		LRK54_RS10695	0.18	+0.6
2,366,159	+		LRK54_RS10695	0.41	-0.8
2,366,303	+		LRK54_RS10695	0.60	-1.3
2,366,303	+		LRK54_RS10695	0.60	-0.5
2,366,303	+		LRK54_RS10695	0.60	-0.4
2,366,303	+		LRK54_RS10695	0.60	+0.2
2,366,303	+		LRK54_RS10695	0.60	-0.3
2,366,304	-		LRK54_RS10695	0.60	-0.3
2,366,304	-		LRK54_RS10695	0.60	-0.6
2,366,304	-		LRK54_RS10695	0.60	-0.2
2,366,304	-		LRK54_RS10695	0.60	+0.9
2,366,304	-		LRK54_RS10695	0.60	+0.5
2,366,438	+		LRK54_RS10695	0.77	-0.6
2,366,438	+		LRK54_RS10695	0.77	+1.2
2,366,438	+		LRK54_RS10695	0.77	-0.5
2,366,438	+		LRK54_RS10695	0.77	+0.5
2,366,438	+		LRK54_RS10695	0.77	-0.3
2,366,439	-		LRK54_RS10695	0.78	+1.2
2,366,439	-		LRK54_RS10695	0.78	-1.2
2,366,439	-		LRK54_RS10695	0.78	-2.3
2,366,439	-		LRK54_RS10695	0.78	-1.5
2,366,439	-		LRK54_RS10695	0.78	-1.7
2,366,439	-		LRK54_RS10695	0.78	-0.0
2,366,472	+		LRK54_RS10695	0.82	-0.5
2,366,472	+		LRK54_RS10695	0.82	-2.0
2,366,472	+		LRK54_RS10695	0.82	-0.9
2,366,472	+		LRK54_RS10695	0.82	+1.0
2,366,472	+		LRK54_RS10695	0.82	+0.2
2,366,472	+		LRK54_RS10695	0.82	+0.3
2,366,472	+		LRK54_RS10695	0.82	+2.6
2,366,472	+		LRK54_RS10695	0.82	-0.2
2,366,472	+		LRK54_RS10695	0.82	+1.9
2,366,472	+		LRK54_RS10695	0.82	+0.0
2,366,472	+		LRK54_RS10695	0.82	+1.0
2,366,472	+		LRK54_RS10695	0.82	-0.8
2,366,473	-		LRK54_RS10695	0.82	+1.2
2,366,473	-		LRK54_RS10695	0.82	+0.9
2,366,473	-		LRK54_RS10695	0.82	-2.1
2,366,473	-		LRK54_RS10695	0.82	-0.9
2,366,473	-		LRK54_RS10695	0.82	+1.4
2,366,473	-		LRK54_RS10695	0.82	-1.6
2,366,473	-		LRK54_RS10695	0.82	-1.6
2,366,473	-		LRK54_RS10695	0.82	-1.1
2,366,473	-		LRK54_RS10695	0.82	-2.9
2,366,473	-		LRK54_RS10695	0.82	+1.0
2,366,473	-		LRK54_RS10695	0.82	-0.0
2,366,473	-		LRK54_RS10695	0.82	+2.3
2,366,655	+				-0.2
2,366,655	+				+0.7
2,366,655	+				-1.9
2,366,655	+				+0.3
2,366,655	+				+1.3
2,366,655	+				-1.4
2,366,655	+				-1.7
2,366,655	+				+0.1
2,366,655	+				+0.6
2,366,655	+				+1.1
2,366,655	+				-0.2
2,366,655	+				-1.2
2,366,655	+				+0.8
2,366,655	+				+0.3
2,366,655	+				+0.6
2,366,655	+				-1.1
2,366,655	+				+0.6
2,366,655	+				+0.3
2,366,655	+				+0.3
2,366,655	+				+0.0
2,366,655	+				+0.1
2,366,655	+				-1.1
2,366,655	+				-1.1
2,366,656	-				+0.4
2,366,656	-				-1.5
2,366,656	-				-1.2
2,366,656	-				-1.4
2,366,656	-				-1.1
2,366,656	-				-1.3
2,366,656	-				-1.5
2,366,656	-				+1.7
2,366,656	-				-1.2
2,366,656	-				+2.2
2,366,656	-				+0.7
2,366,656	-				+0.5
2,366,656	-				-0.4
2,366,656	-				-1.1
2,366,656	-				-1.2
2,366,656	-				-1.1
2,366,656	-				-1.5
2,366,656	-				-0.3
2,366,656	-				-0.2
2,366,656	-				-0.5
2,366,656	-				-0.1
2,366,656	-				+0.0
2,366,656	-				+0.3
2,366,656	-				-1.2
2,366,656	-				-1.5
2,366,656	-				-0.5
2,366,656	-				+0.2
2,366,656	-				-1.9
2,366,656	-				-1.1
2,366,656	-				-0.2
2,366,656	-				-0.6
2,366,656	-				+0.3
2,366,656	-				+1.0
2,366,718	+		LRK54_RS10700	0.15	-1.6
2,366,718	+		LRK54_RS10700	0.15	+0.8
2,366,718	+		LRK54_RS10700	0.15	-1.0
2,366,718	+		LRK54_RS10700	0.15	+0.7
2,366,719	-		LRK54_RS10700	0.15	+0.9
2,366,719	-		LRK54_RS10700	0.15	-1.1
2,366,719	-		LRK54_RS10700	0.15	-0.9
2,366,719	-		LRK54_RS10700	0.15	-1.6
2,366,719	-		LRK54_RS10700	0.15	+2.5
2,366,805	+		LRK54_RS10700	0.30	-0.8
2,366,805	+		LRK54_RS10700	0.30	-0.5
2,366,806	-		LRK54_RS10700	0.30	+1.7
2,366,806	-		LRK54_RS10700	0.30	-1.3
2,366,806	-		LRK54_RS10700	0.30	+0.9
2,366,806	-		LRK54_RS10700	0.30	+1.7
2,366,814	+		LRK54_RS10700	0.31	+0.1
2,366,814	+		LRK54_RS10700	0.31	-0.6
2,366,814	+		LRK54_RS10700	0.31	-0.7
2,366,814	+		LRK54_RS10700	0.31	-0.7
2,366,814	+		LRK54_RS10700	0.31	+1.8
2,366,814	+		LRK54_RS10700	0.31	-0.0
2,366,814	+		LRK54_RS10700	0.31	-3.0
2,366,814	+		LRK54_RS10700	0.31	+1.1
2,366,815	-		LRK54_RS10700	0.31	-1.7
2,366,815	-		LRK54_RS10700	0.31	-0.8
2,366,815	-		LRK54_RS10700	0.31	-1.4
2,366,815	-		LRK54_RS10700	0.31	-0.3
2,366,815	-		LRK54_RS10700	0.31	-0.5
2,366,815	-		LRK54_RS10700	0.31	-0.6
2,366,815	-		LRK54_RS10700	0.31	-1.5
2,366,932	-		LRK54_RS10700	0.51	-1.1
2,366,932	-		LRK54_RS10700	0.51	-1.1
2,367,015	+		LRK54_RS10700	0.65	+1.0
2,367,015	+		LRK54_RS10700	0.65	-1.0
2,367,015	+		LRK54_RS10700	0.65	-0.8
2,367,015	+		LRK54_RS10700	0.65	-0.3
2,367,015	+		LRK54_RS10700	0.65	+2.2
2,367,015	+		LRK54_RS10700	0.65	-0.8
2,367,015	+		LRK54_RS10700	0.65	-0.1
2,367,015	+		LRK54_RS10700	0.65	-1.7
2,367,015	+		LRK54_RS10700	0.65	-0.0
2,367,015	+		LRK54_RS10700	0.65	-0.8
2,367,016	-		LRK54_RS10700	0.66	+0.5
2,367,016	-		LRK54_RS10700	0.66	-0.2
2,367,016	-		LRK54_RS10700	0.66	-1.0
2,367,016	-		LRK54_RS10700	0.66	-1.1
2,367,016	-		LRK54_RS10700	0.66	-0.7
2,367,016	-		LRK54_RS10700	0.66	+0.1
2,367,016	-		LRK54_RS10700	0.66	+2.2
2,367,016	-		LRK54_RS10700	0.66	-1.2
2,367,016	-		LRK54_RS10700	0.66	-1.7
2,367,016	-		LRK54_RS10700	0.66	-0.8
2,367,016	-		LRK54_RS10700	0.66	+1.0
2,367,016	-		LRK54_RS10700	0.66	+0.1
2,367,016	-		LRK54_RS10700	0.66	-0.0
2,367,016	-		LRK54_RS10700	0.66	-1.3
2,367,150	+		LRK54_RS10700	0.88	+3.5
2,367,150	+		LRK54_RS10700	0.88	+0.2
2,367,150	+		LRK54_RS10700	0.88	+0.3
2,367,150	+		LRK54_RS10700	0.88	+0.2
2,367,150	+		LRK54_RS10700	0.88	+0.5
2,367,150	+		LRK54_RS10700	0.88	-0.1
2,367,150	+		LRK54_RS10700	0.88	-0.4
2,367,150	+		LRK54_RS10700	0.88	+1.2
2,367,150	+		LRK54_RS10700	0.88	-1.7
2,367,150	+		LRK54_RS10700	0.88	+0.1
2,367,150	+		LRK54_RS10700	0.88	-0.7
2,367,150	+		LRK54_RS10700	0.88	+1.3
2,367,150	+		LRK54_RS10700	0.88	+0.2
2,367,150	+		LRK54_RS10700	0.88	-0.2
2,367,150	+		LRK54_RS10700	0.88	+0.3
2,367,150	+		LRK54_RS10700	0.88	+1.4
2,367,150	+		LRK54_RS10700	0.88	+0.3
2,367,150	+		LRK54_RS10700	0.88	+1.8
2,367,150	+		LRK54_RS10700	0.88	+0.6
2,367,150	+		LRK54_RS10700	0.88	+0.2
2,367,151	-		LRK54_RS10700	0.89	-0.6
2,367,151	-		LRK54_RS10700	0.89	-0.2
2,367,151	-		LRK54_RS10700	0.89	-2.5
2,367,151	-		LRK54_RS10700	0.89	+0.0
2,367,151	-		LRK54_RS10700	0.89	+0.1
2,367,151	-		LRK54_RS10700	0.89	-0.3
2,367,151	-		LRK54_RS10700	0.89	-0.4
2,367,151	-		LRK54_RS10700	0.89	+0.1
2,367,151	-		LRK54_RS10700	0.89	-1.6
2,367,151	-		LRK54_RS10700	0.89	+0.2
2,367,151	-		LRK54_RS10700	0.89	-1.9
2,367,151	-		LRK54_RS10700	0.89	-1.6
2,367,151	-		LRK54_RS10700	0.89	-1.4
2,367,151	-		LRK54_RS10700	0.89	+0.1
2,367,249	+				+1.1
2,367,249	+				+1.4
2,367,249	+				+0.2
2,367,249	+				+1.1
2,367,250	-				-0.8
2,367,250	-				-0.8
2,367,250	-				+1.2
2,367,250	-				-0.3
2,367,583	+		LRK54_RS10705	0.24	-1.1
2,367,583	+		LRK54_RS10705	0.24	-0.4
2,367,583	+		LRK54_RS10705	0.24	-1.6
2,367,583	+		LRK54_RS10705	0.24	+0.7
2,367,583	+		LRK54_RS10705	0.24	-0.3
2,367,583	+		LRK54_RS10705	0.24	-1.2
2,367,583	+		LRK54_RS10705	0.24	-0.8
2,367,583	+		LRK54_RS10705	0.24	+1.0
2,367,583	+		LRK54_RS10705	0.24	-1.0
2,367,583	+		LRK54_RS10705	0.24	-1.2
2,367,583	+		LRK54_RS10705	0.24	+1.9
2,367,583	+		LRK54_RS10705	0.24	-2.7
2,367,584	-		LRK54_RS10705	0.24	-0.2
2,367,584	-		LRK54_RS10705	0.24	-1.4
2,367,584	-		LRK54_RS10705	0.24	+1.1
2,367,584	-		LRK54_RS10705	0.24	-3.9
2,367,584	-		LRK54_RS10705	0.24	+1.0
2,367,584	-		LRK54_RS10705	0.24	-0.2
2,367,584	-		LRK54_RS10705	0.24	+2.0
2,367,584	-		LRK54_RS10705	0.24	+0.5
2,367,584	-		LRK54_RS10705	0.24	+0.2
2,367,584	-		LRK54_RS10705	0.24	-2.0
2,367,584	-		LRK54_RS10705	0.24	+0.2
2,367,584	-		LRK54_RS10705	0.24	-0.1
2,367,584	-		LRK54_RS10705	0.24	+0.7