Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS22025 and HSERO_RS22030 are separated by 477 nucleotides HSERO_RS22030 and HSERO_RS22035 are separated by 270 nucleotides
HSERO_RS22025: HSERO_RS22025 - aromatic amino acid aminotransferase, at 5,034,924 to 5,036,114
_RS22025
HSERO_RS22030: HSERO_RS22030 - LysR family transcriptional regulator, at 5,036,592 to 5,037,515
_RS22030
HSERO_RS22035: HSERO_RS22035 - tRNA 2-thiocytidine biosynthesis protein TtcA, at 5,037,786 to 5,038,655
_RS22035
Position (kb) 5036
5037
5038 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5035.606 kb on + strand, within HSERO_RS22025 at 5035.662 kb on - strand, within HSERO_RS22025 at 5036.103 kb on - strand at 5036.214 kb on + strand at 5036.222 kb on - strand at 5036.245 kb on + strand at 5036.389 kb on + strand at 5036.399 kb on - strand at 5036.461 kb on + strand at 5036.507 kb on + strand at 5036.512 kb on + strand at 5036.605 kb on - strand at 5036.614 kb on + strand at 5036.622 kb on - strand at 5036.661 kb on + strand at 5036.661 kb on + strand at 5036.705 kb on + strand, within HSERO_RS22030 at 5036.752 kb on + strand, within HSERO_RS22030 at 5036.805 kb on + strand, within HSERO_RS22030 at 5036.820 kb on - strand, within HSERO_RS22030 at 5036.834 kb on + strand, within HSERO_RS22030 at 5036.871 kb on + strand, within HSERO_RS22030 at 5037.036 kb on - strand, within HSERO_RS22030 at 5037.036 kb on - strand, within HSERO_RS22030 at 5037.170 kb on + strand, within HSERO_RS22030 at 5037.179 kb on + strand, within HSERO_RS22030 at 5037.187 kb on - strand, within HSERO_RS22030 at 5037.209 kb on + strand, within HSERO_RS22030 at 5037.278 kb on - strand, within HSERO_RS22030 at 5037.335 kb on - strand, within HSERO_RS22030 at 5037.405 kb on - strand, within HSERO_RS22030 at 5037.413 kb on - strand, within HSERO_RS22030 at 5037.517 kb on - strand at 5037.519 kb on - strand at 5037.649 kb on + strand at 5037.853 kb on + strand at 5037.891 kb on + strand, within HSERO_RS22035 at 5037.994 kb on + strand, within HSERO_RS22035 at 5038.032 kb on - strand, within HSERO_RS22035 at 5038.036 kb on - strand, within HSERO_RS22035 at 5038.118 kb on + strand, within HSERO_RS22035 at 5038.129 kb on + strand, within HSERO_RS22035 at 5038.149 kb on - strand, within HSERO_RS22035 at 5038.237 kb on + strand, within HSERO_RS22035 at 5038.268 kb on + strand, within HSERO_RS22035 at 5038.276 kb on - strand, within HSERO_RS22035 at 5038.401 kb on - strand, within HSERO_RS22035 at 5038.423 kb on - strand, within HSERO_RS22035
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 5,035,606 + HSERO_RS22025 0.57 -1.1 5,035,662 - HSERO_RS22025 0.62 -1.5 5,036,103 - -0.3 5,036,214 + -0.2 5,036,222 - +1.1 5,036,245 + -2.6 5,036,389 + +0.4 5,036,399 - +0.7 5,036,461 + -0.2 5,036,507 + +0.9 5,036,512 + -0.2 5,036,605 - -0.1 5,036,614 + +0.6 5,036,622 - +0.1 5,036,661 + -0.6 5,036,661 + +3.2 5,036,705 + HSERO_RS22030 0.12 -0.2 5,036,752 + HSERO_RS22030 0.17 +1.0 5,036,805 + HSERO_RS22030 0.23 +0.3 5,036,820 - HSERO_RS22030 0.25 +0.6 5,036,834 + HSERO_RS22030 0.26 +1.1 5,036,871 + HSERO_RS22030 0.30 +0.6 5,037,036 - HSERO_RS22030 0.48 -1.2 5,037,036 - HSERO_RS22030 0.48 +0.7 5,037,170 + HSERO_RS22030 0.63 -1.6 5,037,179 + HSERO_RS22030 0.64 -0.8 5,037,187 - HSERO_RS22030 0.64 +1.3 5,037,209 + HSERO_RS22030 0.67 +0.6 5,037,278 - HSERO_RS22030 0.74 +0.8 5,037,335 - HSERO_RS22030 0.80 -0.2 5,037,405 - HSERO_RS22030 0.88 -1.0 5,037,413 - HSERO_RS22030 0.89 -0.5 5,037,517 - +0.0 5,037,519 - -0.6 5,037,649 + +0.2 5,037,853 + +0.6 5,037,891 + HSERO_RS22035 0.12 +0.3 5,037,994 + HSERO_RS22035 0.24 +0.2 5,038,032 - HSERO_RS22035 0.28 +0.0 5,038,036 - HSERO_RS22035 0.29 +0.2 5,038,118 + HSERO_RS22035 0.38 +0.5 5,038,129 + HSERO_RS22035 0.39 +0.0 5,038,149 - HSERO_RS22035 0.42 -1.8 5,038,237 + HSERO_RS22035 0.52 +0.6 5,038,268 + HSERO_RS22035 0.55 +0.2 5,038,276 - HSERO_RS22035 0.56 -0.4 5,038,401 - HSERO_RS22035 0.71 -0.0 5,038,423 - HSERO_RS22035 0.73 +0.0
Or see this region's nucleotide sequence