Experiment: Fructooligosaccharides (FOS) 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10405 and HMPREF1058_RS10400 are separated by 37 nucleotides HMPREF1058_RS10400 and HMPREF1058_RS10395 are separated by 1 nucleotides HMPREF1058_RS10395 and HMPREF1058_RS10390 overlap by 11 nucleotides
HMPREF1058_RS10405: HMPREF1058_RS10405 - hypothetical protein, at 676,706 to 678,133
_RS10405
HMPREF1058_RS10400: HMPREF1058_RS10400 - hypothetical protein, at 678,171 to 678,932
_RS10400
HMPREF1058_RS10395: HMPREF1058_RS10395 - hypothetical protein, at 678,934 to 679,671
_RS10395
HMPREF1058_RS10390: HMPREF1058_RS10390 - hypothetical protein, at 679,661 to 680,629
_RS10390
Position (kb) 678
679 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 677.190 kb on + strand, within HMPREF1058_RS10405 at 677.190 kb on + strand, within HMPREF1058_RS10405 at 677.196 kb on - strand, within HMPREF1058_RS10405 at 677.196 kb on - strand, within HMPREF1058_RS10405 at 677.242 kb on + strand, within HMPREF1058_RS10405 at 677.250 kb on + strand, within HMPREF1058_RS10405 at 677.294 kb on + strand, within HMPREF1058_RS10405 at 677.294 kb on + strand, within HMPREF1058_RS10405 at 677.381 kb on + strand, within HMPREF1058_RS10405 at 677.381 kb on + strand, within HMPREF1058_RS10405 at 677.382 kb on - strand, within HMPREF1058_RS10405 at 677.382 kb on - strand, within HMPREF1058_RS10405 at 677.382 kb on - strand, within HMPREF1058_RS10405 at 677.385 kb on + strand, within HMPREF1058_RS10405 at 677.386 kb on - strand, within HMPREF1058_RS10405 at 677.386 kb on - strand, within HMPREF1058_RS10405 at 677.386 kb on - strand, within HMPREF1058_RS10405 at 677.407 kb on + strand, within HMPREF1058_RS10405 at 677.407 kb on + strand, within HMPREF1058_RS10405 at 677.408 kb on - strand, within HMPREF1058_RS10405 at 677.410 kb on - strand, within HMPREF1058_RS10405 at 677.418 kb on + strand, within HMPREF1058_RS10405 at 677.455 kb on + strand, within HMPREF1058_RS10405 at 677.559 kb on + strand, within HMPREF1058_RS10405 at 677.577 kb on - strand, within HMPREF1058_RS10405 at 677.622 kb on + strand, within HMPREF1058_RS10405 at 677.633 kb on - strand, within HMPREF1058_RS10405 at 677.634 kb on + strand, within HMPREF1058_RS10405 at 677.634 kb on + strand, within HMPREF1058_RS10405 at 677.634 kb on + strand, within HMPREF1058_RS10405 at 677.635 kb on - strand, within HMPREF1058_RS10405 at 677.671 kb on - strand, within HMPREF1058_RS10405 at 677.685 kb on - strand, within HMPREF1058_RS10405 at 677.744 kb on - strand, within HMPREF1058_RS10405 at 677.788 kb on + strand, within HMPREF1058_RS10405 at 677.795 kb on + strand, within HMPREF1058_RS10405 at 677.799 kb on + strand, within HMPREF1058_RS10405 at 677.800 kb on - strand, within HMPREF1058_RS10405 at 677.805 kb on - strand, within HMPREF1058_RS10405 at 677.878 kb on + strand, within HMPREF1058_RS10405 at 677.909 kb on + strand, within HMPREF1058_RS10405 at 677.910 kb on - strand, within HMPREF1058_RS10405 at 677.910 kb on - strand, within HMPREF1058_RS10405 at 677.915 kb on + strand, within HMPREF1058_RS10405 at 677.922 kb on - strand, within HMPREF1058_RS10405 at 677.934 kb on + strand, within HMPREF1058_RS10405 at 677.960 kb on + strand, within HMPREF1058_RS10405 at 677.961 kb on - strand, within HMPREF1058_RS10405 at 677.965 kb on + strand, within HMPREF1058_RS10405 at 678.008 kb on + strand at 678.082 kb on - strand at 678.089 kb on - strand at 678.092 kb on - strand at 678.092 kb on - strand at 678.101 kb on + strand at 678.102 kb on - strand at 678.107 kb on - strand at 678.125 kb on - strand at 678.156 kb on - strand at 678.169 kb on + strand at 678.177 kb on + strand at 678.180 kb on + strand at 678.180 kb on + strand at 678.181 kb on - strand at 678.268 kb on + strand, within HMPREF1058_RS10400 at 678.268 kb on + strand, within HMPREF1058_RS10400 at 678.351 kb on - strand, within HMPREF1058_RS10400 at 678.408 kb on + strand, within HMPREF1058_RS10400 at 678.409 kb on - strand, within HMPREF1058_RS10400 at 678.414 kb on + strand, within HMPREF1058_RS10400 at 678.446 kb on - strand, within HMPREF1058_RS10400 at 678.468 kb on + strand, within HMPREF1058_RS10400 at 678.543 kb on + strand, within HMPREF1058_RS10400 at 678.581 kb on + strand, within HMPREF1058_RS10400 at 678.652 kb on - strand, within HMPREF1058_RS10400 at 678.683 kb on + strand, within HMPREF1058_RS10400 at 678.759 kb on - strand, within HMPREF1058_RS10400 at 678.759 kb on - strand, within HMPREF1058_RS10400 at 678.821 kb on - strand, within HMPREF1058_RS10400 at 678.854 kb on + strand, within HMPREF1058_RS10400 at 678.854 kb on + strand, within HMPREF1058_RS10400 at 678.854 kb on + strand, within HMPREF1058_RS10400 at 678.854 kb on + strand, within HMPREF1058_RS10400 at 678.854 kb on + strand, within HMPREF1058_RS10400 at 678.857 kb on + strand at 678.858 kb on - strand at 678.860 kb on - strand at 678.860 kb on - strand at 678.910 kb on - strand at 678.915 kb on + strand at 678.981 kb on + strand at 678.991 kb on + strand at 679.087 kb on + strand, within HMPREF1058_RS10395 at 679.087 kb on + strand, within HMPREF1058_RS10395 at 679.088 kb on - strand, within HMPREF1058_RS10395 at 679.088 kb on - strand, within HMPREF1058_RS10395 at 679.153 kb on - strand, within HMPREF1058_RS10395 at 679.197 kb on + strand, within HMPREF1058_RS10395 at 679.263 kb on + strand, within HMPREF1058_RS10395 at 679.285 kb on + strand, within HMPREF1058_RS10395 at 679.295 kb on - strand, within HMPREF1058_RS10395 at 679.437 kb on + strand, within HMPREF1058_RS10395 at 679.567 kb on + strand, within HMPREF1058_RS10395 at 679.610 kb on + strand at 679.610 kb on + strand at 679.671 kb on + strand at 679.671 kb on + strand at 679.672 kb on - strand at 679.672 kb on - strand at 679.690 kb on - strand at 679.712 kb on + strand at 679.762 kb on + strand, within HMPREF1058_RS10390 at 679.846 kb on - strand, within HMPREF1058_RS10390 at 679.849 kb on - strand, within HMPREF1058_RS10390 at 679.867 kb on - strand, within HMPREF1058_RS10390 at 679.867 kb on - strand, within HMPREF1058_RS10390 at 679.904 kb on + strand, within HMPREF1058_RS10390 at 679.905 kb on - strand, within HMPREF1058_RS10390
Per-strain Table
Position Strand Gene LocusTag Fraction Fructooligosaccharides (FOS) 5 mg/ml (C) remove 677,190 + HMPREF1058_RS10405 0.34 -0.6 677,190 + HMPREF1058_RS10405 0.34 -0.0 677,196 - HMPREF1058_RS10405 0.34 -0.5 677,196 - HMPREF1058_RS10405 0.34 -1.0 677,242 + HMPREF1058_RS10405 0.38 -0.3 677,250 + HMPREF1058_RS10405 0.38 -0.9 677,294 + HMPREF1058_RS10405 0.41 -0.1 677,294 + HMPREF1058_RS10405 0.41 +1.4 677,381 + HMPREF1058_RS10405 0.47 -0.3 677,381 + HMPREF1058_RS10405 0.47 -1.4 677,382 - HMPREF1058_RS10405 0.47 +0.2 677,382 - HMPREF1058_RS10405 0.47 -0.5 677,382 - HMPREF1058_RS10405 0.47 -0.9 677,385 + HMPREF1058_RS10405 0.48 -0.0 677,386 - HMPREF1058_RS10405 0.48 -1.0 677,386 - HMPREF1058_RS10405 0.48 -0.3 677,386 - HMPREF1058_RS10405 0.48 +0.6 677,407 + HMPREF1058_RS10405 0.49 +0.3 677,407 + HMPREF1058_RS10405 0.49 +0.0 677,408 - HMPREF1058_RS10405 0.49 -0.4 677,410 - HMPREF1058_RS10405 0.49 -1.0 677,418 + HMPREF1058_RS10405 0.50 -0.7 677,455 + HMPREF1058_RS10405 0.52 -0.0 677,559 + HMPREF1058_RS10405 0.60 +0.2 677,577 - HMPREF1058_RS10405 0.61 -2.0 677,622 + HMPREF1058_RS10405 0.64 +1.0 677,633 - HMPREF1058_RS10405 0.65 -0.5 677,634 + HMPREF1058_RS10405 0.65 -0.2 677,634 + HMPREF1058_RS10405 0.65 +0.0 677,634 + HMPREF1058_RS10405 0.65 -0.2 677,635 - HMPREF1058_RS10405 0.65 -0.9 677,671 - HMPREF1058_RS10405 0.68 -0.4 677,685 - HMPREF1058_RS10405 0.69 -0.4 677,744 - HMPREF1058_RS10405 0.73 -0.2 677,788 + HMPREF1058_RS10405 0.76 -1.6 677,795 + HMPREF1058_RS10405 0.76 -0.3 677,799 + HMPREF1058_RS10405 0.77 +0.4 677,800 - HMPREF1058_RS10405 0.77 -0.5 677,805 - HMPREF1058_RS10405 0.77 -0.4 677,878 + HMPREF1058_RS10405 0.82 +0.2 677,909 + HMPREF1058_RS10405 0.84 -0.2 677,910 - HMPREF1058_RS10405 0.84 +0.1 677,910 - HMPREF1058_RS10405 0.84 -1.5 677,915 + HMPREF1058_RS10405 0.85 -0.7 677,922 - HMPREF1058_RS10405 0.85 -0.0 677,934 + HMPREF1058_RS10405 0.86 +0.2 677,960 + HMPREF1058_RS10405 0.88 +0.1 677,961 - HMPREF1058_RS10405 0.88 -0.4 677,965 + HMPREF1058_RS10405 0.88 -0.7 678,008 + +0.2 678,082 - -0.1 678,089 - -0.0 678,092 - -0.5 678,092 - -0.5 678,101 + +1.0 678,102 - +0.4 678,107 - -0.2 678,125 - +0.0 678,156 - -1.5 678,169 + -0.2 678,177 + +0.1 678,180 + +0.6 678,180 + +0.1 678,181 - -1.2 678,268 + HMPREF1058_RS10400 0.13 -0.0 678,268 + HMPREF1058_RS10400 0.13 -0.5 678,351 - HMPREF1058_RS10400 0.24 -2.1 678,408 + HMPREF1058_RS10400 0.31 +0.2 678,409 - HMPREF1058_RS10400 0.31 -2.2 678,414 + HMPREF1058_RS10400 0.32 +0.4 678,446 - HMPREF1058_RS10400 0.36 -1.6 678,468 + HMPREF1058_RS10400 0.39 +0.7 678,543 + HMPREF1058_RS10400 0.49 -0.2 678,581 + HMPREF1058_RS10400 0.54 +0.3 678,652 - HMPREF1058_RS10400 0.63 -1.2 678,683 + HMPREF1058_RS10400 0.67 +0.0 678,759 - HMPREF1058_RS10400 0.77 -1.7 678,759 - HMPREF1058_RS10400 0.77 -2.3 678,821 - HMPREF1058_RS10400 0.85 -1.3 678,854 + HMPREF1058_RS10400 0.90 -0.3 678,854 + HMPREF1058_RS10400 0.90 +0.3 678,854 + HMPREF1058_RS10400 0.90 -0.1 678,854 + HMPREF1058_RS10400 0.90 +0.1 678,854 + HMPREF1058_RS10400 0.90 +0.3 678,857 + -0.4 678,858 - -3.0 678,860 - -1.5 678,860 - -0.6 678,910 - -1.4 678,915 + -0.7 678,981 + +0.6 678,991 + +0.3 679,087 + HMPREF1058_RS10395 0.21 +0.3 679,087 + HMPREF1058_RS10395 0.21 -1.0 679,088 - HMPREF1058_RS10395 0.21 -0.3 679,088 - HMPREF1058_RS10395 0.21 -1.1 679,153 - HMPREF1058_RS10395 0.30 -1.0 679,197 + HMPREF1058_RS10395 0.36 -0.3 679,263 + HMPREF1058_RS10395 0.45 -0.1 679,285 + HMPREF1058_RS10395 0.48 -0.2 679,295 - HMPREF1058_RS10395 0.49 -0.1 679,437 + HMPREF1058_RS10395 0.68 +0.8 679,567 + HMPREF1058_RS10395 0.86 -1.3 679,610 + +0.4 679,610 + -0.2 679,671 + -0.0 679,671 + -0.2 679,672 - -0.3 679,672 - -2.1 679,690 - -1.7 679,712 + -0.1 679,762 + HMPREF1058_RS10390 0.10 -0.1 679,846 - HMPREF1058_RS10390 0.19 -1.3 679,849 - HMPREF1058_RS10390 0.19 -2.3 679,867 - HMPREF1058_RS10390 0.21 -1.5 679,867 - HMPREF1058_RS10390 0.21 -0.7 679,904 + HMPREF1058_RS10390 0.25 +0.4 679,905 - HMPREF1058_RS10390 0.25 -1.0
Or see this region's nucleotide sequence