Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3342

Experiment: acetate 40 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate 40 mM
3,472,264	+		Ga0059261_3340	0.83	-0.9
3,472,264	+		Ga0059261_3340	0.83	-2.6
3,472,265	-		Ga0059261_3340	0.83	-0.1
3,472,439	-				-0.3
3,472,439	-				+0.5
3,472,439	-				-0.8
3,472,457	+				+0.4
3,472,457	+				-1.5
3,472,457	+				-0.7
3,472,457	+				-2.5
3,472,457	+				-1.5
3,472,458	-				+0.5
3,472,458	-				+0.9
3,472,458	-				-0.3
3,472,458	-				-0.3
3,472,503	-				-0.7
3,472,503	-				-0.3
3,472,503	-				-2.2
3,472,565	+		Ga0059261_3341	0.20	-1.5
3,472,566	-		Ga0059261_3341	0.20	-1.0
3,472,566	-		Ga0059261_3341	0.20	-1.1
3,472,566	-		Ga0059261_3341	0.20	-2.0
3,472,566	-		Ga0059261_3341	0.20	-0.8
3,472,566	-		Ga0059261_3341	0.20	-1.6
3,472,645	+		Ga0059261_3341	0.35	+0.6
3,472,645	+		Ga0059261_3341	0.35	-0.7
3,472,645	+		Ga0059261_3341	0.35	-0.7
3,472,721	+		Ga0059261_3341	0.49	-1.6
3,472,721	+		Ga0059261_3341	0.49	-1.1
3,472,721	+		Ga0059261_3341	0.49	-0.2
3,472,721	+		Ga0059261_3341	0.49	-1.7
3,472,721	+		Ga0059261_3341	0.49	-1.0
3,472,721	+		Ga0059261_3341	0.49	+0.9
3,472,722	-		Ga0059261_3341	0.49	-1.5
3,472,722	-		Ga0059261_3341	0.49	-0.9
3,472,722	-		Ga0059261_3341	0.49	-1.5
3,472,722	-		Ga0059261_3341	0.49	-0.7
3,472,722	-		Ga0059261_3341	0.49	-1.1
3,473,017	+				-2.1
3,473,018	-				-0.4
3,473,059	+				+0.4
3,473,059	+				-2.5
3,473,059	+				-1.5
3,473,059	+				+0.4
3,473,060	-				-0.5
3,473,060	-				-0.1
3,473,060	-				+0.4
3,473,061	+				+0.5
3,473,061	+				-2.3
3,473,062	-				+0.4
3,473,062	-				-0.5
3,473,130	+				+0.1
3,473,130	+				+0.4
3,473,130	+				-0.1
3,473,130	+				-0.4
3,473,130	+				-0.4
3,473,158	+				-0.3
3,473,158	+				-0.1
3,473,158	+				+1.2
3,473,158	+				+0.4
3,473,158	+				-0.6
3,473,159	-				-0.1
3,473,159	-				-0.2
3,473,159	-				+0.2
3,473,159	-				+1.9
3,473,159	-				+0.1
3,473,159	-				-0.4
3,473,347	+		Ga0059261_3342	0.22	+0.7
3,473,347	+		Ga0059261_3342	0.22	-0.4
3,473,348	-		Ga0059261_3342	0.22	+0.4
3,473,348	-		Ga0059261_3342	0.22	-0.3
3,473,348	-		Ga0059261_3342	0.22	-0.5
3,473,348	-		Ga0059261_3342	0.22	-0.5
3,473,348	-				-1.0
3,473,455	+		Ga0059261_3342	0.31	+0.0
3,473,455	+		Ga0059261_3342	0.31	-1.4
3,473,456	-		Ga0059261_3342	0.31	+0.4
3,473,456	-		Ga0059261_3342	0.31	-0.1
3,473,456	-		Ga0059261_3342	0.31	+0.3
3,473,473	+		Ga0059261_3342	0.33	-0.5
3,473,473	+		Ga0059261_3342	0.33	+0.3
3,473,473	+		Ga0059261_3342	0.33	+0.2
3,473,474	-		Ga0059261_3342	0.33	+0.0
3,473,474	-		Ga0059261_3342	0.33	-0.6
3,473,474	-				+1.9
3,473,533	+		Ga0059261_3342	0.38	-1.1
3,473,533	+		Ga0059261_3342	0.38	+0.3
3,473,533	+		Ga0059261_3342	0.38	-0.1
3,473,533	+		Ga0059261_3342	0.38	+0.2
3,473,534	-		Ga0059261_3342	0.38	+0.2
3,473,534	-		Ga0059261_3342	0.38	+1.2
3,473,534	-		Ga0059261_3342	0.38	+0.5
3,473,534	-		Ga0059261_3342	0.38	-0.4
3,473,534	-		Ga0059261_3342	0.38	-0.8
3,473,534	-		Ga0059261_3342	0.38	+0.6
3,473,534	-		Ga0059261_3342	0.38	+0.1
3,473,534	-		Ga0059261_3342	0.38	+0.4
3,473,534	-				+0.9
3,473,542	+		Ga0059261_3342	0.39	-0.5
3,473,542	+		Ga0059261_3342	0.39	+0.3
3,473,542	+		Ga0059261_3342	0.39	+0.0
3,473,542	+		Ga0059261_3342	0.39	+0.1
3,473,543	-		Ga0059261_3342	0.39	-0.1
3,473,543	-		Ga0059261_3342	0.39	+0.3
3,473,543	-		Ga0059261_3342	0.39	+0.1
3,473,543	-		Ga0059261_3342	0.39	+0.0
3,473,543	-		Ga0059261_3342	0.39	-0.2
3,473,543	-		Ga0059261_3342	0.39	+0.3
3,473,543	-		Ga0059261_3342	0.39	+0.1
3,473,543	-		Ga0059261_3342	0.39	-0.0
3,473,551	+		Ga0059261_3342	0.39	+1.1
3,473,552	-		Ga0059261_3342	0.40	-0.8
3,473,552	-		Ga0059261_3342	0.40	+0.6
3,473,552	-		Ga0059261_3342	0.40	-0.9
3,473,602	+		Ga0059261_3342	0.44	-0.1
3,473,602	+		Ga0059261_3342	0.44	-0.1
3,473,602	+		Ga0059261_3342	0.44	+1.4
3,473,604	+		Ga0059261_3342	0.44	-0.2
3,473,604	+		Ga0059261_3342	0.44	-0.0
3,473,604	+		Ga0059261_3342	0.44	-0.6
3,473,604	+		Ga0059261_3342	0.44	-0.1
3,473,605	-		Ga0059261_3342	0.44	-0.7
3,473,606	-		Ga0059261_3342	0.44	+0.5
3,473,942	-		Ga0059261_3342	0.73	+0.1
3,474,058	+		Ga0059261_3342	0.83	+0.3
3,474,088	+		Ga0059261_3342	0.86	+0.1
3,474,089	-		Ga0059261_3342	0.86	-0.3
3,474,127	+		Ga0059261_3342	0.89	+0.3
3,474,127	+		Ga0059261_3342	0.89	+0.2
3,474,127	+		Ga0059261_3342	0.89	-0.3
3,474,127	+		Ga0059261_3342	0.89	+0.5
3,474,127	+		Ga0059261_3342	0.89	+0.0
3,474,128	-		Ga0059261_3342	0.89	+0.4
3,474,128	-		Ga0059261_3342	0.89	-0.2
3,474,128	-		Ga0059261_3342	0.89	-0.3
3,474,128	-		Ga0059261_3342	0.89	-0.1
3,474,128	-		Ga0059261_3342	0.89	-0.1
3,474,128	-		Ga0059261_3342	0.89	-0.7
3,474,128	-		Ga0059261_3342	0.89	+1.2
3,474,389	+		Ga0059261_3343	0.11	+0.3
3,474,389	+		Ga0059261_3343	0.11	-0.4
3,474,389	+		Ga0059261_3343	0.11	-0.4
3,474,390	-		Ga0059261_3343	0.11	+0.4
3,474,410	+		Ga0059261_3343	0.15	-0.3
3,474,410	+		Ga0059261_3343	0.15	+1.0
3,474,410	+		Ga0059261_3343	0.15	+0.6
3,474,411	-		Ga0059261_3343	0.16	-0.2
3,474,411	-		Ga0059261_3343	0.16	+1.1
3,474,437	+		Ga0059261_3343	0.21	+0.4
3,474,437	+		Ga0059261_3343	0.21	+1.2
3,474,437	+		Ga0059261_3343	0.21	-0.5
3,474,438	-		Ga0059261_3343	0.21	-1.2
3,474,438	-		Ga0059261_3343	0.21	-0.1
3,474,438	-		Ga0059261_3343	0.21	+0.8
3,474,527	+		Ga0059261_3343	0.39	-0.1
3,474,527	+		Ga0059261_3343	0.39	+0.1
3,474,527	+				+0.8
3,474,528	-		Ga0059261_3343	0.39	-0.3
3,474,528	-		Ga0059261_3343	0.39	-0.8
3,474,528	-		Ga0059261_3343	0.39	+0.1
3,474,528	-		Ga0059261_3343	0.39	-0.5
3,474,528	-		Ga0059261_3343	0.39	-0.3
3,474,528	-		Ga0059261_3343	0.39	-0.6
3,474,528	-		Ga0059261_3343	0.39	+1.0
3,474,536	+				+1.8
3,474,536	+		Ga0059261_3343	0.41	+0.0
3,474,537	-		Ga0059261_3343	0.41	-0.1
3,474,537	-		Ga0059261_3343	0.41	-0.5
3,474,537	-		Ga0059261_3343	0.41	-0.9
3,474,537	-				-1.2
3,474,537	-		Ga0059261_3343	0.41	-0.8
3,474,826	-				-1.0
3,474,870	+		Ga0059261_3344	0.14	-0.1
3,474,870	+		Ga0059261_3344	0.14	-0.1
3,474,871	-		Ga0059261_3344	0.14	+0.5
3,475,002	+		Ga0059261_3344	0.38	+0.3
3,475,002	+		Ga0059261_3344	0.38	+0.7
3,475,152	+		Ga0059261_3344	0.66	-0.0
3,475,152	+		Ga0059261_3344	0.66	-0.5
3,475,152	+		Ga0059261_3344	0.66	-0.9
3,475,153	-		Ga0059261_3344	0.66	-0.3
3,475,164	+		Ga0059261_3344	0.68	-0.2
3,475,165	-		Ga0059261_3344	0.68	-0.6