Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02299

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02298 and CCNA_02299 are separated by 58 nucleotidesCCNA_02299 and CCNA_02300 overlap by 4 nucleotidesCCNA_02300 and CCNA_02301 overlap by 4 nucleotides CCNA_02297: CCNA_02297 - hypoxanthine-guanine phosphoribosyltransferase, at 2,444,280 to 2,444,861 _02297 CCNA_02298: CCNA_02298 - MJ0042 family finger-like domain protein, at 2,444,803 to 2,445,762 _02298 CCNA_02299: CCNA_02299 - cell division ATP-binding protein FtsE, at 2,445,821 to 2,446,528 _02299 CCNA_02300: CCNA_02300 - cell division protein FtsX, at 2,446,525 to 2,447,418 _02300 CCNA_02301: CCNA_02301 - YdcF-like family protein, at 2,447,415 to 2,448,032 _02301 Position (kb) 2445 2446 2447Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2444.837 kb on - strandat 2444.865 kb on - strandat 2444.871 kb on + strandat 2444.895 kb on + strandat 2444.954 kb on + strand, within CCNA_02298at 2444.971 kb on + strand, within CCNA_02298at 2445.119 kb on - strand, within CCNA_02298at 2445.132 kb on - strand, within CCNA_02298at 2445.147 kb on - strand, within CCNA_02298at 2445.178 kb on - strand, within CCNA_02298at 2445.195 kb on - strand, within CCNA_02298at 2445.195 kb on - strand, within CCNA_02298at 2445.200 kb on - strand, within CCNA_02298at 2445.226 kb on + strand, within CCNA_02298at 2445.238 kb on + strand, within CCNA_02298at 2445.245 kb on + strand, within CCNA_02298at 2445.245 kb on + strand, within CCNA_02298at 2445.246 kb on - strand, within CCNA_02298at 2445.273 kb on + strand, within CCNA_02298at 2445.281 kb on - strand, within CCNA_02298at 2445.281 kb on - strand, within CCNA_02298at 2445.281 kb on - strand, within CCNA_02298at 2445.281 kb on - strand, within CCNA_02298at 2445.281 kb on - strand, within CCNA_02298at 2445.339 kb on + strand, within CCNA_02298at 2445.355 kb on + strand, within CCNA_02298at 2445.363 kb on - strand, within CCNA_02298at 2445.408 kb on - strand, within CCNA_02298at 2445.508 kb on + strand, within CCNA_02298at 2445.595 kb on - strand, within CCNA_02298at 2445.607 kb on + strand, within CCNA_02298at 2445.614 kb on - strand, within CCNA_02298at 2445.615 kb on - strand, within CCNA_02298at 2445.691 kb on - strandat 2445.717 kb on + strandat 2445.735 kb on - strandat 2445.831 kb on + strandat 2445.836 kb on + strandat 2445.841 kb on + strandat 2445.844 kb on - strandat 2445.844 kb on - strandat 2445.868 kb on + strandat 2445.991 kb on + strand, within CCNA_02299at 2446.042 kb on + strand, within CCNA_02299at 2446.047 kb on + strand, within CCNA_02299at 2446.071 kb on + strand, within CCNA_02299at 2446.165 kb on + strand, within CCNA_02299at 2446.220 kb on + strand, within CCNA_02299at 2446.220 kb on + strand, within CCNA_02299at 2446.220 kb on + strand, within CCNA_02299at 2446.220 kb on + strand, within CCNA_02299at 2446.313 kb on + strand, within CCNA_02299at 2446.406 kb on - strand, within CCNA_02299at 2446.422 kb on + strand, within CCNA_02299at 2446.422 kb on + strand, within CCNA_02299at 2446.461 kb on - strandat 2446.511 kb on - strandat 2446.688 kb on - strand, within CCNA_02300at 2446.864 kb on + strand, within CCNA_02300at 2447.140 kb on + strand, within CCNA_02300at 2447.174 kb on + strand, within CCNA_02300at 2447.318 kb on - strand, within CCNA_02300at 2447.415 kb on + strandat 2447.457 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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2,444,837 - +1.2
2,444,865 - +1.7
2,444,871 + +0.6
2,444,895 + +1.5
2,444,954 + CCNA_02298 0.16 -0.1
2,444,971 + CCNA_02298 0.17 +0.5
2,445,119 - CCNA_02298 0.33 +0.6
2,445,132 - CCNA_02298 0.34 +0.7
2,445,147 - CCNA_02298 0.36 +0.9
2,445,178 - CCNA_02298 0.39 +1.0
2,445,195 - CCNA_02298 0.41 +1.5
2,445,195 - CCNA_02298 0.41 +1.3
2,445,200 - CCNA_02298 0.41 +2.7
2,445,226 + CCNA_02298 0.44 -1.4
2,445,238 + CCNA_02298 0.45 +0.1
2,445,245 + CCNA_02298 0.46 +0.7
2,445,245 + CCNA_02298 0.46 +0.0
2,445,246 - CCNA_02298 0.46 +1.7
2,445,273 + CCNA_02298 0.49 -1.6
2,445,281 - CCNA_02298 0.50 +0.7
2,445,281 - CCNA_02298 0.50 +1.8
2,445,281 - CCNA_02298 0.50 +1.0
2,445,281 - CCNA_02298 0.50 +1.7
2,445,281 - CCNA_02298 0.50 +1.4
2,445,339 + CCNA_02298 0.56 -0.6
2,445,355 + CCNA_02298 0.57 +0.2
2,445,363 - CCNA_02298 0.58 +1.1
2,445,408 - CCNA_02298 0.63 +1.5
2,445,508 + CCNA_02298 0.73 -1.0
2,445,595 - CCNA_02298 0.82 +1.4
2,445,607 + CCNA_02298 0.84 -2.2
2,445,614 - CCNA_02298 0.84 +0.9
2,445,615 - CCNA_02298 0.85 -0.2
2,445,691 - +0.3
2,445,717 + +2.0
2,445,735 - -0.8
2,445,831 + -1.2
2,445,836 + -0.6
2,445,841 + -0.9
2,445,844 - -2.6
2,445,844 - -1.1
2,445,868 + +1.4
2,445,991 + CCNA_02299 0.24 -0.9
2,446,042 + CCNA_02299 0.31 +0.4
2,446,047 + CCNA_02299 0.32 -1.9
2,446,071 + CCNA_02299 0.35 -2.7
2,446,165 + CCNA_02299 0.49 -1.9
2,446,220 + CCNA_02299 0.56 -1.4
2,446,220 + CCNA_02299 0.56 -1.9
2,446,220 + CCNA_02299 0.56 -1.1
2,446,220 + CCNA_02299 0.56 -1.6
2,446,313 + CCNA_02299 0.69 -1.1
2,446,406 - CCNA_02299 0.83 -1.6
2,446,422 + CCNA_02299 0.85 -0.1
2,446,422 + CCNA_02299 0.85 -2.9
2,446,461 - -1.7
2,446,511 - -3.6
2,446,688 - CCNA_02300 0.18 -1.1
2,446,864 + CCNA_02300 0.38 -1.8
2,447,140 + CCNA_02300 0.69 -0.1
2,447,174 + CCNA_02300 0.73 -2.0
2,447,318 - CCNA_02300 0.89 -1.4
2,447,415 + -0.2
2,447,457 + -2.7

Or see this region's nucleotide sequence