Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01933

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01931 and CCNA_01932 overlap by 4 nucleotidesCCNA_01932 and CCNA_01933 are separated by 104 nucleotidesCCNA_01933 and CCNA_01934 overlap by 1 nucleotidesCCNA_01934 and CCNA_01935 are separated by 5 nucleotidesCCNA_01935 and CCNA_01936 are separated by 7 nucleotides CCNA_01931: CCNA_01931 - TetR-family transcriptional regulator, at 2,076,486 to 2,077,046 _01931 CCNA_01932: CCNA_01932 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 2,077,043 to 2,077,861 _01932 CCNA_01933: CCNA_01933 - hypothetical protein, at 2,077,966 to 2,078,166 _01933 CCNA_01934: CCNA_01934 - HesB protein family, at 2,078,166 to 2,078,567 _01934 CCNA_01935: CCNA_01935 - FeS assembly SUF system protein, at 2,078,573 to 2,078,929 _01935 CCNA_01936: CCNA_01936 - cysteine desulfurase/selenocysteine lyase, at 2,078,937 to 2,080,163 _01936 Position (kb) 2077 2078 2079Strain fitness (log2 ratio) -2 -1 0 1 2at 2076.968 kb on - strand, within CCNA_01931at 2077.010 kb on - strandat 2077.024 kb on + strandat 2077.027 kb on - strandat 2077.083 kb on - strandat 2077.095 kb on - strandat 2077.154 kb on + strand, within CCNA_01932at 2077.183 kb on - strand, within CCNA_01932at 2077.185 kb on + strand, within CCNA_01932at 2077.199 kb on + strand, within CCNA_01932at 2077.213 kb on + strand, within CCNA_01932at 2077.216 kb on - strand, within CCNA_01932at 2077.231 kb on + strand, within CCNA_01932at 2077.231 kb on + strand, within CCNA_01932at 2077.239 kb on - strand, within CCNA_01932at 2077.240 kb on - strand, within CCNA_01932at 2077.244 kb on + strand, within CCNA_01932at 2077.293 kb on - strand, within CCNA_01932at 2077.296 kb on - strand, within CCNA_01932at 2077.372 kb on + strand, within CCNA_01932at 2077.385 kb on - strand, within CCNA_01932at 2077.447 kb on + strand, within CCNA_01932at 2077.455 kb on - strand, within CCNA_01932at 2077.455 kb on - strand, within CCNA_01932at 2077.455 kb on - strand, within CCNA_01932at 2077.487 kb on + strand, within CCNA_01932at 2077.495 kb on - strand, within CCNA_01932at 2077.505 kb on - strand, within CCNA_01932at 2077.547 kb on + strand, within CCNA_01932at 2077.547 kb on + strand, within CCNA_01932at 2077.611 kb on + strand, within CCNA_01932at 2077.633 kb on + strand, within CCNA_01932at 2077.655 kb on + strand, within CCNA_01932at 2077.679 kb on + strand, within CCNA_01932at 2077.679 kb on + strand, within CCNA_01932at 2077.740 kb on + strandat 2077.782 kb on + strandat 2077.807 kb on + strandat 2077.817 kb on + strandat 2077.872 kb on + strandat 2077.884 kb on + strandat 2077.884 kb on + strandat 2077.885 kb on + strandat 2077.892 kb on - strandat 2077.896 kb on + strandat 2077.931 kb on + strandat 2077.934 kb on - strandat 2077.950 kb on + strandat 2077.984 kb on - strandat 2078.056 kb on + strand, within CCNA_01933at 2078.062 kb on - strand, within CCNA_01933at 2078.083 kb on - strand, within CCNA_01933at 2078.103 kb on - strand, within CCNA_01933at 2078.110 kb on - strand, within CCNA_01933at 2078.122 kb on + strand, within CCNA_01933at 2078.128 kb on - strand, within CCNA_01933at 2078.128 kb on - strand, within CCNA_01933at 2078.138 kb on - strand, within CCNA_01933at 2078.169 kb on + strandat 2078.172 kb on - strandat 2078.288 kb on - strand, within CCNA_01934at 2078.441 kb on - strand, within CCNA_01934at 2078.512 kb on + strand, within CCNA_01934at 2078.569 kb on - strandat 2078.569 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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2,076,968 - CCNA_01931 0.86 +1.2
2,077,010 - -0.2
2,077,024 + +1.9
2,077,027 - -0.2
2,077,083 - +0.5
2,077,095 - +0.3
2,077,154 + CCNA_01932 0.14 -0.2
2,077,183 - CCNA_01932 0.17 -1.5
2,077,185 + CCNA_01932 0.17 -1.0
2,077,199 + CCNA_01932 0.19 -0.0
2,077,213 + CCNA_01932 0.21 +0.8
2,077,216 - CCNA_01932 0.21 -1.5
2,077,231 + CCNA_01932 0.23 -1.2
2,077,231 + CCNA_01932 0.23 -2.0
2,077,239 - CCNA_01932 0.24 +0.4
2,077,240 - CCNA_01932 0.24 +0.2
2,077,244 + CCNA_01932 0.25 -0.2
2,077,293 - CCNA_01932 0.31 -0.2
2,077,296 - CCNA_01932 0.31 +0.7
2,077,372 + CCNA_01932 0.40 +1.0
2,077,385 - CCNA_01932 0.42 -0.0
2,077,447 + CCNA_01932 0.49 +0.7
2,077,455 - CCNA_01932 0.50 -1.0
2,077,455 - CCNA_01932 0.50 -2.7
2,077,455 - CCNA_01932 0.50 -1.0
2,077,487 + CCNA_01932 0.54 -2.0
2,077,495 - CCNA_01932 0.55 -2.3
2,077,505 - CCNA_01932 0.56 -1.2
2,077,547 + CCNA_01932 0.62 +0.4
2,077,547 + CCNA_01932 0.62 -1.5
2,077,611 + CCNA_01932 0.69 -0.7
2,077,633 + CCNA_01932 0.72 -1.7
2,077,655 + CCNA_01932 0.75 -0.8
2,077,679 + CCNA_01932 0.78 -0.3
2,077,679 + CCNA_01932 0.78 +0.5
2,077,740 + +1.5
2,077,782 + -1.0
2,077,807 + +0.2
2,077,817 + -0.2
2,077,872 + -1.3
2,077,884 + +1.8
2,077,884 + -0.7
2,077,885 + -0.3
2,077,892 - +0.2
2,077,896 + -1.2
2,077,931 + +1.5
2,077,934 - +0.7
2,077,950 + -2.3
2,077,984 - -0.2
2,078,056 + CCNA_01933 0.45 -1.1
2,078,062 - CCNA_01933 0.48 +1.2
2,078,083 - CCNA_01933 0.58 +1.2
2,078,103 - CCNA_01933 0.68 +2.2
2,078,110 - CCNA_01933 0.72 +1.7
2,078,122 + CCNA_01933 0.78 -2.0
2,078,128 - CCNA_01933 0.81 +0.3
2,078,128 - CCNA_01933 0.81 +0.5
2,078,138 - CCNA_01933 0.86 +1.8
2,078,169 + -2.0
2,078,172 - +0.9
2,078,288 - CCNA_01934 0.30 -0.1
2,078,441 - CCNA_01934 0.68 +0.8
2,078,512 + CCNA_01934 0.86 -0.5
2,078,569 - +1.9
2,078,569 - +1.3

Or see this region's nucleotide sequence