Experiment: D-Maltose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00679 and CCNA_00680 are separated by 132 nucleotides CCNA_00680 and CCNA_00681 overlap by 4 nucleotides CCNA_00681 and CCNA_00682 are separated by 94 nucleotides CCNA_00682 and CCNA_00683 are separated by 396 nucleotides
CCNA_00679: CCNA_00679 - transposase, IS116/IS110/IS902 family, at 735,544 to 736,479
_00679
CCNA_00680: CCNA_00680 - 2-hydroxychromene-2-carboxylate isomerase, at 736,612 to 737,247
_00680
CCNA_00681: CCNA_00681 - short chain dehydrogenase, at 737,244 to 737,981
_00681
CCNA_00682: CCNA_00682 - MarR-family transcriptional regulator, at 738,076 to 738,534
_00682
CCNA_00683: CCNA_00683 - Deoxyribodipyrimidine photo-lyase-related protein, at 738,931 to 740,460
_00683
Position (kb) 737
738 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 736.489 kb on + strand at 736.499 kb on + strand at 736.499 kb on + strand at 736.499 kb on + strand at 736.499 kb on + strand at 736.525 kb on + strand at 736.533 kb on - strand at 736.564 kb on - strand at 736.573 kb on + strand at 736.582 kb on + strand at 736.596 kb on - strand at 736.609 kb on + strand at 736.631 kb on + strand at 736.639 kb on - strand at 736.653 kb on - strand at 736.674 kb on - strand at 736.729 kb on - strand, within CCNA_00680 at 736.745 kb on + strand, within CCNA_00680 at 736.752 kb on + strand, within CCNA_00680 at 736.753 kb on - strand, within CCNA_00680 at 736.753 kb on - strand, within CCNA_00680 at 736.753 kb on - strand, within CCNA_00680 at 736.753 kb on - strand, within CCNA_00680 at 736.753 kb on - strand, within CCNA_00680 at 736.753 kb on - strand, within CCNA_00680 at 736.760 kb on - strand, within CCNA_00680 at 736.777 kb on - strand, within CCNA_00680 at 736.797 kb on - strand, within CCNA_00680 at 736.832 kb on - strand, within CCNA_00680 at 736.862 kb on + strand, within CCNA_00680 at 736.862 kb on + strand, within CCNA_00680 at 736.862 kb on + strand, within CCNA_00680 at 736.862 kb on + strand, within CCNA_00680 at 736.870 kb on - strand at 736.870 kb on - strand, within CCNA_00680 at 736.883 kb on - strand, within CCNA_00680 at 736.885 kb on + strand, within CCNA_00680 at 736.893 kb on - strand, within CCNA_00680 at 736.893 kb on - strand, within CCNA_00680 at 736.935 kb on - strand, within CCNA_00680 at 736.940 kb on + strand, within CCNA_00680 at 736.940 kb on + strand, within CCNA_00680 at 736.947 kb on - strand, within CCNA_00680 at 736.966 kb on - strand, within CCNA_00680 at 736.981 kb on + strand, within CCNA_00680 at 737.006 kb on + strand, within CCNA_00680 at 737.008 kb on + strand, within CCNA_00680 at 737.065 kb on - strand, within CCNA_00680 at 737.078 kb on + strand, within CCNA_00680 at 737.078 kb on + strand, within CCNA_00680 at 737.126 kb on - strand, within CCNA_00680 at 737.133 kb on - strand, within CCNA_00680 at 737.171 kb on + strand, within CCNA_00680 at 737.232 kb on + strand at 737.250 kb on - strand at 737.258 kb on - strand at 737.260 kb on - strand at 737.270 kb on + strand at 737.270 kb on + strand at 737.270 kb on + strand at 737.270 kb on + strand at 737.270 kb on + strand at 737.270 kb on + strand at 737.278 kb on - strand at 737.297 kb on - strand at 737.317 kb on + strand at 737.341 kb on + strand, within CCNA_00681 at 737.348 kb on + strand, within CCNA_00681 at 737.360 kb on + strand, within CCNA_00681 at 737.397 kb on + strand, within CCNA_00681 at 737.397 kb on + strand, within CCNA_00681 at 737.397 kb on + strand, within CCNA_00681 at 737.405 kb on - strand, within CCNA_00681 at 737.405 kb on - strand, within CCNA_00681 at 737.405 kb on - strand, within CCNA_00681 at 737.405 kb on - strand at 737.405 kb on - strand, within CCNA_00681 at 737.457 kb on - strand, within CCNA_00681 at 737.495 kb on + strand, within CCNA_00681 at 737.570 kb on - strand, within CCNA_00681 at 737.575 kb on - strand, within CCNA_00681 at 737.577 kb on - strand, within CCNA_00681 at 737.606 kb on + strand, within CCNA_00681 at 737.643 kb on + strand, within CCNA_00681 at 737.644 kb on + strand, within CCNA_00681 at 737.655 kb on + strand, within CCNA_00681 at 737.659 kb on - strand, within CCNA_00681 at 737.684 kb on + strand, within CCNA_00681 at 737.684 kb on + strand, within CCNA_00681 at 737.684 kb on + strand, within CCNA_00681 at 737.684 kb on + strand, within CCNA_00681 at 737.689 kb on + strand, within CCNA_00681 at 737.692 kb on - strand, within CCNA_00681 at 737.715 kb on - strand, within CCNA_00681 at 737.717 kb on - strand, within CCNA_00681 at 737.730 kb on - strand, within CCNA_00681 at 737.811 kb on + strand, within CCNA_00681 at 737.811 kb on + strand, within CCNA_00681 at 737.819 kb on - strand, within CCNA_00681 at 737.819 kb on - strand, within CCNA_00681 at 737.819 kb on - strand, within CCNA_00681 at 737.819 kb on - strand, within CCNA_00681 at 737.819 kb on - strand, within CCNA_00681 at 737.819 kb on - strand, within CCNA_00681 at 737.819 kb on - strand, within CCNA_00681 at 737.819 kb on - strand, within CCNA_00681 at 737.819 kb on - strand, within CCNA_00681 at 737.854 kb on - strand, within CCNA_00681 at 737.888 kb on + strand, within CCNA_00681 at 737.888 kb on + strand, within CCNA_00681 at 737.890 kb on + strand, within CCNA_00681 at 737.890 kb on + strand, within CCNA_00681 at 737.890 kb on + strand, within CCNA_00681 at 737.890 kb on + strand, within CCNA_00681 at 737.890 kb on + strand, within CCNA_00681 at 737.890 kb on + strand, within CCNA_00681 at 737.890 kb on + strand, within CCNA_00681 at 737.890 kb on + strand, within CCNA_00681 at 737.890 kb on + strand at 737.895 kb on + strand, within CCNA_00681 at 737.896 kb on - strand, within CCNA_00681 at 737.896 kb on - strand, within CCNA_00681 at 737.896 kb on - strand, within CCNA_00681 at 737.896 kb on - strand, within CCNA_00681 at 737.898 kb on - strand, within CCNA_00681 at 737.898 kb on - strand, within CCNA_00681 at 737.898 kb on - strand, within CCNA_00681 at 737.898 kb on - strand, within CCNA_00681 at 737.898 kb on - strand, within CCNA_00681 at 737.898 kb on - strand, within CCNA_00681 at 737.898 kb on - strand, within CCNA_00681 at 737.898 kb on - strand, within CCNA_00681 at 737.898 kb on - strand, within CCNA_00681 at 737.898 kb on - strand, within CCNA_00681 at 737.903 kb on - strand, within CCNA_00681 at 737.910 kb on + strand at 737.910 kb on + strand at 737.918 kb on - strand at 737.918 kb on - strand at 737.919 kb on - strand at 737.919 kb on - strand at 737.959 kb on - strand at 737.959 kb on - strand at 737.959 kb on - strand at 738.073 kb on + strand at 738.091 kb on - strand at 738.093 kb on - strand at 738.102 kb on + strand at 738.110 kb on - strand at 738.110 kb on - strand at 738.196 kb on - strand, within CCNA_00682 at 738.196 kb on - strand, within CCNA_00682 at 738.196 kb on - strand, within CCNA_00682 at 738.236 kb on - strand, within CCNA_00682 at 738.255 kb on + strand, within CCNA_00682 at 738.259 kb on - strand, within CCNA_00682 at 738.268 kb on + strand, within CCNA_00682 at 738.299 kb on - strand, within CCNA_00682 at 738.299 kb on - strand, within CCNA_00682 at 738.311 kb on + strand, within CCNA_00682 at 738.311 kb on + strand, within CCNA_00682 at 738.311 kb on + strand, within CCNA_00682 at 738.322 kb on + strand, within CCNA_00682 at 738.332 kb on + strand, within CCNA_00682 at 738.340 kb on - strand, within CCNA_00682 at 738.345 kb on + strand, within CCNA_00682 at 738.351 kb on + strand, within CCNA_00682 at 738.351 kb on + strand, within CCNA_00682 at 738.377 kb on - strand, within CCNA_00682 at 738.377 kb on - strand, within CCNA_00682 at 738.412 kb on - strand, within CCNA_00682 at 738.414 kb on + strand, within CCNA_00682 at 738.441 kb on + strand, within CCNA_00682 at 738.449 kb on - strand, within CCNA_00682 at 738.451 kb on + strand, within CCNA_00682 at 738.451 kb on + strand, within CCNA_00682 at 738.451 kb on + strand, within CCNA_00682 at 738.451 kb on + strand, within CCNA_00682 at 738.459 kb on - strand, within CCNA_00682 at 738.459 kb on - strand, within CCNA_00682 at 738.464 kb on - strand, within CCNA_00682 at 738.467 kb on + strand, within CCNA_00682 at 738.469 kb on - strand, within CCNA_00682 at 738.475 kb on + strand, within CCNA_00682 at 738.488 kb on - strand, within CCNA_00682 at 738.496 kb on + strand at 738.513 kb on + strand at 738.519 kb on + strand at 738.539 kb on + strand at 738.563 kb on + strand at 738.588 kb on + strand at 738.593 kb on + strand at 738.594 kb on - strand at 738.606 kb on + strand at 738.614 kb on - strand at 738.614 kb on - strand at 738.614 kb on - strand at 738.614 kb on - strand at 738.614 kb on - strand at 738.617 kb on + strand at 738.617 kb on + strand at 738.622 kb on + strand at 738.622 kb on + strand at 738.630 kb on - strand at 738.635 kb on - strand at 738.640 kb on - strand at 738.640 kb on - strand at 738.653 kb on - strand at 738.660 kb on - strand at 738.660 kb on - strand at 738.677 kb on + strand at 738.677 kb on + strand at 738.685 kb on - strand at 738.685 kb on - strand at 738.685 kb on - strand at 738.700 kb on + strand at 738.700 kb on + strand at 738.740 kb on - strand at 738.740 kb on - strand at 738.762 kb on - strand at 738.766 kb on + strand at 738.809 kb on + strand at 738.814 kb on + strand at 738.817 kb on - strand at 738.817 kb on - strand at 738.819 kb on + strand at 738.819 kb on + strand at 738.819 kb on + strand at 738.822 kb on - strand at 738.822 kb on - strand at 738.824 kb on + strand at 738.824 kb on + strand at 738.824 kb on + strand at 738.827 kb on - strand at 738.832 kb on - strand at 738.837 kb on + strand at 738.842 kb on + strand at 738.844 kb on + strand at 738.844 kb on + strand at 738.844 kb on + strand at 738.844 kb on + strand at 738.844 kb on + strand at 738.844 kb on + strand at 738.844 kb on + strand at 738.845 kb on + strand at 738.846 kb on + strand at 738.846 kb on + strand at 738.846 kb on + strand at 738.846 kb on + strand at 738.846 kb on + strand at 738.846 kb on + strand at 738.846 kb on + strand at 738.846 kb on + strand at 738.846 kb on + strand at 738.846 kb on + strand at 738.846 kb on + strand at 738.852 kb on - strand at 738.852 kb on - strand at 738.852 kb on - strand at 738.854 kb on - strand at 738.854 kb on - strand at 738.854 kb on - strand at 738.854 kb on - strand at 738.877 kb on - strand at 738.877 kb on - strand at 738.877 kb on - strand at 738.900 kb on - strand at 738.919 kb on + strand at 738.924 kb on + strand at 738.927 kb on - strand at 738.936 kb on - strand at 738.962 kb on + strand at 738.962 kb on + strand at 738.962 kb on + strand at 738.962 kb on + strand at 738.962 kb on + strand at 738.970 kb on - strand at 738.970 kb on - strand at 738.970 kb on - strand at 738.970 kb on - strand at 738.970 kb on - strand at 738.970 kb on - strand at 738.970 kb on - strand at 738.979 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose (C) remove 736,489 + -0.2 736,499 + +0.3 736,499 + +1.0 736,499 + -0.8 736,499 + +0.7 736,525 + -0.5 736,533 - +1.0 736,564 - -0.9 736,573 + +1.2 736,582 + +1.0 736,596 - +0.2 736,609 + -1.7 736,631 + +1.0 736,639 - -1.5 736,653 - +0.3 736,674 - +1.4 736,729 - CCNA_00680 0.18 -0.7 736,745 + CCNA_00680 0.21 -1.1 736,752 + CCNA_00680 0.22 +0.6 736,753 - CCNA_00680 0.22 +1.2 736,753 - CCNA_00680 0.22 -1.3 736,753 - CCNA_00680 0.22 -1.0 736,753 - CCNA_00680 0.22 -0.7 736,753 - CCNA_00680 0.22 -1.4 736,753 - CCNA_00680 0.22 +2.1 736,760 - CCNA_00680 0.23 +0.0 736,777 - CCNA_00680 0.26 +0.6 736,797 - CCNA_00680 0.29 -1.2 736,832 - CCNA_00680 0.35 +1.7 736,862 + CCNA_00680 0.39 -0.7 736,862 + CCNA_00680 0.39 -0.6 736,862 + CCNA_00680 0.39 +1.0 736,862 + CCNA_00680 0.39 -0.3 736,870 - +1.5 736,870 - CCNA_00680 0.41 +0.4 736,883 - CCNA_00680 0.43 +0.6 736,885 + CCNA_00680 0.43 -0.4 736,893 - CCNA_00680 0.44 +0.6 736,893 - CCNA_00680 0.44 +1.5 736,935 - CCNA_00680 0.51 -0.5 736,940 + CCNA_00680 0.52 -2.4 736,940 + CCNA_00680 0.52 -0.3 736,947 - CCNA_00680 0.53 +0.6 736,966 - CCNA_00680 0.56 +0.0 736,981 + CCNA_00680 0.58 +0.2 737,006 + CCNA_00680 0.62 +0.5 737,008 + CCNA_00680 0.62 -1.0 737,065 - CCNA_00680 0.71 +0.9 737,078 + CCNA_00680 0.73 -0.4 737,078 + CCNA_00680 0.73 -0.5 737,126 - CCNA_00680 0.81 +0.8 737,133 - CCNA_00680 0.82 -0.8 737,171 + CCNA_00680 0.88 -1.8 737,232 + +0.4 737,250 - +1.3 737,258 - -1.2 737,260 - -0.1 737,270 + -1.7 737,270 + -1.8 737,270 + +1.5 737,270 + -2.3 737,270 + -1.8 737,270 + +0.7 737,278 - +0.5 737,297 - +0.1 737,317 + -2.1 737,341 + CCNA_00681 0.13 -2.1 737,348 + CCNA_00681 0.14 +1.0 737,360 + CCNA_00681 0.16 -0.8 737,397 + CCNA_00681 0.21 +0.5 737,397 + CCNA_00681 0.21 +1.3 737,397 + CCNA_00681 0.21 -2.6 737,405 - CCNA_00681 0.22 -0.8 737,405 - CCNA_00681 0.22 -0.1 737,405 - CCNA_00681 0.22 -1.1 737,405 - +0.5 737,405 - CCNA_00681 0.22 -0.5 737,457 - CCNA_00681 0.29 -2.8 737,495 + CCNA_00681 0.34 -1.7 737,570 - CCNA_00681 0.44 -0.3 737,575 - CCNA_00681 0.45 -2.4 737,577 - CCNA_00681 0.45 -0.5 737,606 + CCNA_00681 0.49 +0.9 737,643 + CCNA_00681 0.54 -0.8 737,644 + CCNA_00681 0.54 -0.0 737,655 + CCNA_00681 0.56 -1.3 737,659 - CCNA_00681 0.56 +0.5 737,684 + CCNA_00681 0.60 -0.3 737,684 + CCNA_00681 0.60 +0.2 737,684 + CCNA_00681 0.60 -1.9 737,684 + CCNA_00681 0.60 -2.3 737,689 + CCNA_00681 0.60 -0.1 737,692 - CCNA_00681 0.61 +0.5 737,715 - CCNA_00681 0.64 -1.3 737,717 - CCNA_00681 0.64 -0.7 737,730 - CCNA_00681 0.66 -0.7 737,811 + CCNA_00681 0.77 +2.5 737,811 + CCNA_00681 0.77 -1.3 737,819 - CCNA_00681 0.78 +0.5 737,819 - CCNA_00681 0.78 +0.2 737,819 - CCNA_00681 0.78 -0.5 737,819 - CCNA_00681 0.78 -0.8 737,819 - CCNA_00681 0.78 -0.8 737,819 - CCNA_00681 0.78 -2.4 737,819 - CCNA_00681 0.78 -0.8 737,819 - CCNA_00681 0.78 -3.1 737,819 - CCNA_00681 0.78 -0.9 737,854 - CCNA_00681 0.83 +1.7 737,888 + CCNA_00681 0.87 +0.0 737,888 + CCNA_00681 0.87 -1.4 737,890 + CCNA_00681 0.88 +0.7 737,890 + CCNA_00681 0.88 +0.7 737,890 + CCNA_00681 0.88 -0.5 737,890 + CCNA_00681 0.88 +1.2 737,890 + CCNA_00681 0.88 +1.2 737,890 + CCNA_00681 0.88 -3.0 737,890 + CCNA_00681 0.88 -2.1 737,890 + CCNA_00681 0.88 -1.7 737,890 + +2.5 737,895 + CCNA_00681 0.88 +0.2 737,896 - CCNA_00681 0.88 -1.7 737,896 - CCNA_00681 0.88 +1.6 737,896 - CCNA_00681 0.88 -0.4 737,896 - CCNA_00681 0.88 +0.2 737,898 - CCNA_00681 0.89 -0.1 737,898 - CCNA_00681 0.89 -0.3 737,898 - CCNA_00681 0.89 -0.9 737,898 - CCNA_00681 0.89 -0.8 737,898 - CCNA_00681 0.89 +0.5 737,898 - CCNA_00681 0.89 -0.3 737,898 - CCNA_00681 0.89 +1.8 737,898 - CCNA_00681 0.89 +0.5 737,898 - CCNA_00681 0.89 -2.0 737,898 - CCNA_00681 0.89 -0.3 737,903 - CCNA_00681 0.89 +0.8 737,910 + -1.7 737,910 + +0.3 737,918 - -0.4 737,918 - -0.9 737,919 - -0.7 737,919 - -0.0 737,959 - +0.6 737,959 - -2.2 737,959 - -1.4 738,073 + +2.5 738,091 - -0.1 738,093 - -1.2 738,102 + +1.1 738,110 - -0.8 738,110 - -1.4 738,196 - CCNA_00682 0.26 -0.7 738,196 - CCNA_00682 0.26 -0.9 738,196 - CCNA_00682 0.26 -1.1 738,236 - CCNA_00682 0.35 -2.6 738,255 + CCNA_00682 0.39 +1.5 738,259 - CCNA_00682 0.40 -0.4 738,268 + CCNA_00682 0.42 +0.9 738,299 - CCNA_00682 0.49 -2.9 738,299 - CCNA_00682 0.49 +1.1 738,311 + CCNA_00682 0.51 +1.3 738,311 + CCNA_00682 0.51 +1.8 738,311 + CCNA_00682 0.51 +1.5 738,322 + CCNA_00682 0.54 +1.8 738,332 + CCNA_00682 0.56 +2.0 738,340 - CCNA_00682 0.58 -0.3 738,345 + CCNA_00682 0.59 +2.0 738,351 + CCNA_00682 0.60 +1.6 738,351 + CCNA_00682 0.60 +1.8 738,377 - CCNA_00682 0.66 -0.5 738,377 - CCNA_00682 0.66 +0.6 738,412 - CCNA_00682 0.73 +1.8 738,414 + CCNA_00682 0.74 +1.4 738,441 + CCNA_00682 0.80 +1.6 738,449 - CCNA_00682 0.81 -1.1 738,451 + CCNA_00682 0.82 +1.9 738,451 + CCNA_00682 0.82 +1.7 738,451 + CCNA_00682 0.82 +1.7 738,451 + CCNA_00682 0.82 +1.9 738,459 - CCNA_00682 0.83 -1.5 738,459 - CCNA_00682 0.83 -1.6 738,464 - CCNA_00682 0.85 +0.6 738,467 + CCNA_00682 0.85 +1.7 738,469 - CCNA_00682 0.86 -1.7 738,475 + CCNA_00682 0.87 +1.7 738,488 - CCNA_00682 0.90 -0.2 738,496 + +1.5 738,513 + +1.6 738,519 + -1.0 738,539 + +1.8 738,563 + +0.2 738,588 + +0.5 738,593 + +0.1 738,594 - +0.5 738,606 + -0.5 738,614 - +1.2 738,614 - +0.3 738,614 - +0.5 738,614 - +0.2 738,614 - -0.5 738,617 + +1.2 738,617 + +0.0 738,622 + +1.1 738,622 + +0.4 738,630 - -0.9 738,635 - +0.3 738,640 - -1.4 738,640 - +0.8 738,653 - +0.3 738,660 - -1.6 738,660 - +0.2 738,677 + +1.8 738,677 + +0.5 738,685 - +0.3 738,685 - +0.4 738,685 - -0.4 738,700 + +1.5 738,700 + +0.0 738,740 - +0.9 738,740 - +0.7 738,762 - -1.5 738,766 + +1.3 738,809 + +1.1 738,814 + +1.2 738,817 - +0.7 738,817 - +0.2 738,819 + +0.1 738,819 + +1.0 738,819 + -0.3 738,822 - +1.1 738,822 - +0.9 738,824 + +0.8 738,824 + -0.3 738,824 + +0.7 738,827 - +1.8 738,832 - +0.5 738,837 + +0.6 738,842 + +0.5 738,844 + -1.2 738,844 + +0.8 738,844 + +1.4 738,844 + +3.5 738,844 + +0.3 738,844 + +0.6 738,844 + +0.5 738,845 + -0.8 738,846 + -1.5 738,846 + +0.7 738,846 + -0.2 738,846 + +0.4 738,846 + -0.2 738,846 + -0.1 738,846 + +0.3 738,846 + -0.6 738,846 + +0.9 738,846 + +1.1 738,846 + +1.6 738,852 - -1.1 738,852 - +0.4 738,852 - +1.8 738,854 - +1.7 738,854 - +2.0 738,854 - +2.3 738,854 - +1.3 738,877 - +0.8 738,877 - +0.5 738,877 - +0.6 738,900 - +0.4 738,919 + -1.9 738,924 + -0.8 738,927 - +1.1 738,936 - +1.4 738,962 + -1.1 738,962 + +0.2 738,962 + -1.4 738,962 + +0.9 738,962 + -1.3 738,970 - +0.6 738,970 - +0.8 738,970 - +2.0 738,970 - +1.5 738,970 - +1.4 738,970 - +1.0 738,970 - -0.2 738,979 - +1.6
Or see this region's nucleotide sequence