Experiment: D-Maltose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00287 and CCNA_00288 are separated by 166 nucleotides CCNA_00288 and CCNA_00289 are separated by 14 nucleotides CCNA_00289 and CCNA_00290 are separated by 250 nucleotides
CCNA_00287: CCNA_00287 - photosensory histidine protein kinase LovK, at 298,212 to 299,318
_00287
CCNA_00288: CCNA_00288 - ABC-type sulfate transport system, periplasmic component, at 299,485 to 300,534
_00288
CCNA_00289: CCNA_00289 - hypothetical protein, at 300,549 to 300,797
_00289
CCNA_00290: CCNA_00290 - autotransporter protein, at 301,048 to 304,305
_00290
Position (kb) 299
300
301 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 298.488 kb on + strand, within CCNA_00287 at 298.488 kb on + strand, within CCNA_00287 at 298.488 kb on + strand, within CCNA_00287 at 298.488 kb on + strand, within CCNA_00287 at 298.488 kb on + strand, within CCNA_00287 at 298.488 kb on + strand, within CCNA_00287 at 298.488 kb on + strand, within CCNA_00287 at 298.495 kb on + strand, within CCNA_00287 at 298.496 kb on - strand, within CCNA_00287 at 298.496 kb on - strand, within CCNA_00287 at 298.496 kb on - strand, within CCNA_00287 at 298.538 kb on + strand, within CCNA_00287 at 298.562 kb on + strand, within CCNA_00287 at 298.585 kb on + strand, within CCNA_00287 at 298.596 kb on + strand, within CCNA_00287 at 298.620 kb on - strand, within CCNA_00287 at 298.633 kb on + strand, within CCNA_00287 at 298.674 kb on - strand, within CCNA_00287 at 298.674 kb on - strand, within CCNA_00287 at 298.677 kb on + strand, within CCNA_00287 at 298.677 kb on + strand, within CCNA_00287 at 298.690 kb on - strand, within CCNA_00287 at 298.695 kb on - strand, within CCNA_00287 at 298.720 kb on - strand, within CCNA_00287 at 298.723 kb on + strand, within CCNA_00287 at 298.723 kb on + strand, within CCNA_00287 at 298.753 kb on - strand, within CCNA_00287 at 298.755 kb on - strand, within CCNA_00287 at 298.787 kb on - strand, within CCNA_00287 at 298.787 kb on - strand, within CCNA_00287 at 298.824 kb on + strand, within CCNA_00287 at 298.827 kb on - strand, within CCNA_00287 at 298.829 kb on + strand, within CCNA_00287 at 298.832 kb on + strand at 298.832 kb on + strand, within CCNA_00287 at 298.854 kb on + strand, within CCNA_00287 at 298.856 kb on + strand, within CCNA_00287 at 298.862 kb on - strand, within CCNA_00287 at 298.870 kb on + strand, within CCNA_00287 at 299.074 kb on + strand, within CCNA_00287 at 299.074 kb on + strand, within CCNA_00287 at 299.074 kb on + strand, within CCNA_00287 at 299.074 kb on + strand, within CCNA_00287 at 299.074 kb on + strand, within CCNA_00287 at 299.074 kb on + strand, within CCNA_00287 at 299.082 kb on - strand, within CCNA_00287 at 299.082 kb on - strand, within CCNA_00287 at 299.082 kb on - strand, within CCNA_00287 at 299.128 kb on - strand, within CCNA_00287 at 299.144 kb on - strand, within CCNA_00287 at 299.150 kb on + strand, within CCNA_00287 at 299.164 kb on - strand, within CCNA_00287 at 299.211 kb on + strand at 299.211 kb on + strand at 299.220 kb on - strand at 299.240 kb on - strand at 299.263 kb on - strand at 299.267 kb on + strand at 299.321 kb on - strand at 299.325 kb on + strand at 299.327 kb on - strand at 299.356 kb on - strand at 299.421 kb on - strand at 299.478 kb on - strand at 299.479 kb on - strand at 299.506 kb on + strand at 299.522 kb on + strand at 299.536 kb on + strand at 299.539 kb on - strand at 299.556 kb on + strand at 299.556 kb on + strand at 299.556 kb on + strand at 299.564 kb on - strand at 299.580 kb on + strand at 299.591 kb on + strand, within CCNA_00288 at 299.592 kb on + strand, within CCNA_00288 at 299.599 kb on - strand, within CCNA_00288 at 299.620 kb on + strand, within CCNA_00288 at 299.627 kb on + strand, within CCNA_00288 at 299.628 kb on - strand, within CCNA_00288 at 299.647 kb on - strand, within CCNA_00288 at 299.654 kb on + strand, within CCNA_00288 at 299.654 kb on + strand, within CCNA_00288 at 299.689 kb on + strand, within CCNA_00288 at 299.693 kb on + strand, within CCNA_00288 at 299.697 kb on - strand, within CCNA_00288 at 299.698 kb on + strand, within CCNA_00288 at 299.698 kb on + strand, within CCNA_00288 at 299.706 kb on - strand, within CCNA_00288 at 299.754 kb on - strand, within CCNA_00288 at 299.783 kb on + strand, within CCNA_00288 at 299.786 kb on - strand, within CCNA_00288 at 299.792 kb on + strand, within CCNA_00288 at 299.810 kb on - strand, within CCNA_00288 at 299.848 kb on + strand, within CCNA_00288 at 299.874 kb on + strand, within CCNA_00288 at 299.882 kb on - strand, within CCNA_00288 at 299.908 kb on + strand, within CCNA_00288 at 299.908 kb on + strand, within CCNA_00288 at 299.924 kb on + strand, within CCNA_00288 at 299.924 kb on + strand, within CCNA_00288 at 299.932 kb on - strand, within CCNA_00288 at 299.948 kb on + strand, within CCNA_00288 at 299.948 kb on + strand, within CCNA_00288 at 299.955 kb on - strand, within CCNA_00288 at 299.962 kb on - strand, within CCNA_00288 at 299.987 kb on + strand, within CCNA_00288 at 300.047 kb on - strand, within CCNA_00288 at 300.080 kb on + strand, within CCNA_00288 at 300.080 kb on + strand, within CCNA_00288 at 300.125 kb on - strand, within CCNA_00288 at 300.136 kb on + strand, within CCNA_00288 at 300.152 kb on - strand, within CCNA_00288 at 300.188 kb on + strand, within CCNA_00288 at 300.243 kb on - strand, within CCNA_00288 at 300.267 kb on - strand, within CCNA_00288 at 300.267 kb on - strand, within CCNA_00288 at 300.267 kb on - strand, within CCNA_00288 at 300.267 kb on - strand, within CCNA_00288 at 300.303 kb on + strand, within CCNA_00288 at 300.321 kb on + strand, within CCNA_00288 at 300.324 kb on - strand, within CCNA_00288 at 300.329 kb on - strand, within CCNA_00288 at 300.356 kb on + strand, within CCNA_00288 at 300.364 kb on - strand, within CCNA_00288 at 300.373 kb on - strand, within CCNA_00288 at 300.373 kb on - strand, within CCNA_00288 at 300.387 kb on + strand, within CCNA_00288 at 300.387 kb on + strand, within CCNA_00288 at 300.387 kb on + strand, within CCNA_00288 at 300.395 kb on - strand, within CCNA_00288 at 300.406 kb on - strand, within CCNA_00288 at 300.416 kb on - strand, within CCNA_00288 at 300.421 kb on + strand, within CCNA_00288 at 300.422 kb on + strand, within CCNA_00288 at 300.429 kb on - strand, within CCNA_00288 at 300.429 kb on - strand, within CCNA_00288 at 300.440 kb on - strand at 300.499 kb on + strand at 300.572 kb on + strand at 300.599 kb on - strand, within CCNA_00289 at 300.599 kb on - strand, within CCNA_00289 at 300.622 kb on + strand, within CCNA_00289 at 300.660 kb on + strand, within CCNA_00289 at 300.711 kb on + strand, within CCNA_00289 at 300.712 kb on + strand, within CCNA_00289 at 300.716 kb on + strand, within CCNA_00289 at 300.720 kb on - strand, within CCNA_00289 at 300.720 kb on - strand, within CCNA_00289 at 300.735 kb on - strand, within CCNA_00289 at 300.746 kb on + strand, within CCNA_00289 at 300.754 kb on - strand, within CCNA_00289 at 300.754 kb on - strand, within CCNA_00289 at 300.754 kb on - strand, within CCNA_00289 at 300.754 kb on - strand, within CCNA_00289 at 300.754 kb on - strand, within CCNA_00289 at 300.806 kb on - strand at 301.004 kb on + strand at 301.046 kb on + strand at 301.046 kb on + strand at 301.046 kb on + strand at 301.046 kb on + strand at 301.046 kb on + strand at 301.054 kb on - strand at 301.054 kb on - strand at 301.054 kb on - strand at 301.054 kb on - strand at 301.075 kb on - strand at 301.117 kb on + strand at 301.143 kb on + strand at 301.143 kb on + strand at 301.151 kb on - strand at 301.151 kb on - strand at 301.201 kb on - strand at 301.201 kb on - strand at 301.228 kb on - strand at 301.228 kb on - strand at 301.228 kb on - strand at 301.240 kb on + strand at 301.248 kb on - strand at 301.248 kb on - strand at 301.302 kb on - strand at 301.303 kb on - strand at 301.303 kb on - strand at 301.333 kb on + strand at 301.420 kb on - strand, within CCNA_00290 at 301.434 kb on - strand, within CCNA_00290 at 301.436 kb on - strand, within CCNA_00290 at 301.499 kb on + strand, within CCNA_00290
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose (C) remove 298,488 + CCNA_00287 0.25 +0.1 298,488 + CCNA_00287 0.25 -0.3 298,488 + CCNA_00287 0.25 -1.1 298,488 + CCNA_00287 0.25 -0.8 298,488 + CCNA_00287 0.25 -0.7 298,488 + CCNA_00287 0.25 -0.5 298,488 + CCNA_00287 0.25 -0.3 298,495 + CCNA_00287 0.26 -1.2 298,496 - CCNA_00287 0.26 -1.2 298,496 - CCNA_00287 0.26 -0.2 298,496 - CCNA_00287 0.26 +0.4 298,538 + CCNA_00287 0.29 -0.0 298,562 + CCNA_00287 0.32 -0.3 298,585 + CCNA_00287 0.34 -2.1 298,596 + CCNA_00287 0.35 -1.6 298,620 - CCNA_00287 0.37 +0.6 298,633 + CCNA_00287 0.38 -0.1 298,674 - CCNA_00287 0.42 +0.5 298,674 - CCNA_00287 0.42 +0.3 298,677 + CCNA_00287 0.42 -0.5 298,677 + CCNA_00287 0.42 +0.7 298,690 - CCNA_00287 0.43 -0.1 298,695 - CCNA_00287 0.44 +0.4 298,720 - CCNA_00287 0.46 -0.4 298,723 + CCNA_00287 0.46 +1.4 298,723 + CCNA_00287 0.46 -1.3 298,753 - CCNA_00287 0.49 -0.7 298,755 - CCNA_00287 0.49 +0.5 298,787 - CCNA_00287 0.52 +1.4 298,787 - CCNA_00287 0.52 +0.2 298,824 + CCNA_00287 0.55 -2.7 298,827 - CCNA_00287 0.56 +2.8 298,829 + CCNA_00287 0.56 -1.1 298,832 + +1.0 298,832 + CCNA_00287 0.56 -0.4 298,854 + CCNA_00287 0.58 -1.3 298,856 + CCNA_00287 0.58 -1.3 298,862 - CCNA_00287 0.59 +0.2 298,870 + CCNA_00287 0.59 -0.9 299,074 + CCNA_00287 0.78 -2.6 299,074 + CCNA_00287 0.78 -0.6 299,074 + CCNA_00287 0.78 +0.3 299,074 + CCNA_00287 0.78 -0.1 299,074 + CCNA_00287 0.78 +0.2 299,074 + CCNA_00287 0.78 -2.1 299,082 - CCNA_00287 0.79 -1.7 299,082 - CCNA_00287 0.79 +0.4 299,082 - CCNA_00287 0.79 -0.3 299,128 - CCNA_00287 0.83 -0.1 299,144 - CCNA_00287 0.84 +0.0 299,150 + CCNA_00287 0.85 -3.0 299,164 - CCNA_00287 0.86 +0.3 299,211 + -1.2 299,211 + +1.4 299,220 - -1.3 299,240 - -0.7 299,263 - +0.9 299,267 + -1.5 299,321 - +0.1 299,325 + -1.1 299,327 - +0.2 299,356 - -0.3 299,421 - +1.0 299,478 - -0.1 299,479 - -0.6 299,506 + -1.5 299,522 + -1.0 299,536 + -3.5 299,539 - -5.5 299,556 + -2.9 299,556 + -3.1 299,556 + -2.3 299,564 - -2.7 299,580 + -0.3 299,591 + CCNA_00288 0.10 -4.3 299,592 + CCNA_00288 0.10 -1.5 299,599 - CCNA_00288 0.11 -4.9 299,620 + CCNA_00288 0.13 -3.6 299,627 + CCNA_00288 0.14 -1.9 299,628 - CCNA_00288 0.14 -1.5 299,647 - CCNA_00288 0.15 -4.5 299,654 + CCNA_00288 0.16 -4.3 299,654 + CCNA_00288 0.16 -3.5 299,689 + CCNA_00288 0.19 -3.3 299,693 + CCNA_00288 0.20 -0.5 299,697 - CCNA_00288 0.20 -3.7 299,698 + CCNA_00288 0.20 -2.0 299,698 + CCNA_00288 0.20 -3.8 299,706 - CCNA_00288 0.21 -0.9 299,754 - CCNA_00288 0.26 -4.2 299,783 + CCNA_00288 0.28 -2.3 299,786 - CCNA_00288 0.29 -2.8 299,792 + CCNA_00288 0.29 -0.8 299,810 - CCNA_00288 0.31 -2.4 299,848 + CCNA_00288 0.35 -2.3 299,874 + CCNA_00288 0.37 -3.2 299,882 - CCNA_00288 0.38 -4.3 299,908 + CCNA_00288 0.40 -3.6 299,908 + CCNA_00288 0.40 -2.4 299,924 + CCNA_00288 0.42 -2.2 299,924 + CCNA_00288 0.42 -0.6 299,932 - CCNA_00288 0.43 -3.3 299,948 + CCNA_00288 0.44 -3.0 299,948 + CCNA_00288 0.44 -0.3 299,955 - CCNA_00288 0.45 -1.0 299,962 - CCNA_00288 0.45 -4.6 299,987 + CCNA_00288 0.48 -2.3 300,047 - CCNA_00288 0.54 -2.6 300,080 + CCNA_00288 0.57 -3.0 300,080 + CCNA_00288 0.57 -1.2 300,125 - CCNA_00288 0.61 -3.1 300,136 + CCNA_00288 0.62 -3.3 300,152 - CCNA_00288 0.64 -3.1 300,188 + CCNA_00288 0.67 -3.3 300,243 - CCNA_00288 0.72 -1.3 300,267 - CCNA_00288 0.74 -3.6 300,267 - CCNA_00288 0.74 -4.1 300,267 - CCNA_00288 0.74 -3.7 300,267 - CCNA_00288 0.74 -2.5 300,303 + CCNA_00288 0.78 -0.6 300,321 + CCNA_00288 0.80 -2.8 300,324 - CCNA_00288 0.80 -3.3 300,329 - CCNA_00288 0.80 -0.0 300,356 + CCNA_00288 0.83 -3.3 300,364 - CCNA_00288 0.84 -4.2 300,373 - CCNA_00288 0.85 -3.4 300,373 - CCNA_00288 0.85 -3.6 300,387 + CCNA_00288 0.86 -3.5 300,387 + CCNA_00288 0.86 -1.2 300,387 + CCNA_00288 0.86 -3.1 300,395 - CCNA_00288 0.87 -3.4 300,406 - CCNA_00288 0.88 -6.4 300,416 - CCNA_00288 0.89 -3.1 300,421 + CCNA_00288 0.89 -3.6 300,422 + CCNA_00288 0.89 -1.0 300,429 - CCNA_00288 0.90 -3.2 300,429 - CCNA_00288 0.90 -0.9 300,440 - -3.4 300,499 + -1.2 300,572 + -1.2 300,599 - CCNA_00289 0.20 +1.3 300,599 - CCNA_00289 0.20 -0.1 300,622 + CCNA_00289 0.29 +0.9 300,660 + CCNA_00289 0.45 -0.7 300,711 + CCNA_00289 0.65 -0.7 300,712 + CCNA_00289 0.65 -0.7 300,716 + CCNA_00289 0.67 +0.5 300,720 - CCNA_00289 0.69 +0.1 300,720 - CCNA_00289 0.69 -0.6 300,735 - CCNA_00289 0.75 -1.0 300,746 + CCNA_00289 0.79 -1.0 300,754 - CCNA_00289 0.82 +0.0 300,754 - CCNA_00289 0.82 -0.9 300,754 - CCNA_00289 0.82 -1.3 300,754 - CCNA_00289 0.82 +0.2 300,754 - CCNA_00289 0.82 -0.6 300,806 - +0.3 301,004 + -1.1 301,046 + -0.2 301,046 + +0.7 301,046 + -1.0 301,046 + -0.9 301,046 + -1.2 301,054 - +1.6 301,054 - +1.5 301,054 - +1.4 301,054 - +1.4 301,075 - +1.4 301,117 + -2.2 301,143 + -2.0 301,143 + -0.8 301,151 - -0.0 301,151 - +0.5 301,201 - +0.1 301,201 - +0.4 301,228 - +1.0 301,228 - -0.7 301,228 - +0.2 301,240 + -3.3 301,248 - +0.6 301,248 - +1.0 301,302 - +0.1 301,303 - -0.3 301,303 - +0.1 301,333 + -3.0 301,420 - CCNA_00290 0.11 +0.8 301,434 - CCNA_00290 0.12 -0.6 301,436 - CCNA_00290 0.12 +0.6 301,499 + CCNA_00290 0.14 -2.5
Or see this region's nucleotide sequence