Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS01930

Experiment: R2A with Cobalt chloride 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS01925 and CA265_RS01930 are separated by 106 nucleotidesCA265_RS01930 and CA265_RS01935 are separated by 438 nucleotides CA265_RS01925: CA265_RS01925 - aryl-sulfate sulfohydrolase, at 485,202 to 486,632 _RS01925 CA265_RS01930: CA265_RS01930 - hypothetical protein, at 486,739 to 488,310 _RS01930 CA265_RS01935: CA265_RS01935 - hypothetical protein, at 488,749 to 491,874 _RS01935 Position (kb) 486 487 488 489Strain fitness (log2 ratio) -3 -2 -1 0 1at 485.757 kb on - strand, within CA265_RS01925at 485.757 kb on - strand, within CA265_RS01925at 485.817 kb on + strand, within CA265_RS01925at 485.913 kb on + strand, within CA265_RS01925at 485.913 kb on + strand, within CA265_RS01925at 485.914 kb on - strand, within CA265_RS01925at 485.928 kb on + strand, within CA265_RS01925at 486.003 kb on - strand, within CA265_RS01925at 486.003 kb on - strand, within CA265_RS01925at 486.052 kb on + strand, within CA265_RS01925at 486.063 kb on - strand, within CA265_RS01925at 486.088 kb on + strand, within CA265_RS01925at 486.089 kb on - strand, within CA265_RS01925at 486.089 kb on - strand, within CA265_RS01925at 486.108 kb on + strand, within CA265_RS01925at 486.140 kb on - strand, within CA265_RS01925at 486.203 kb on + strand, within CA265_RS01925at 486.204 kb on - strand, within CA265_RS01925at 486.204 kb on - strand, within CA265_RS01925at 486.251 kb on + strand, within CA265_RS01925at 486.277 kb on + strand, within CA265_RS01925at 486.277 kb on + strand, within CA265_RS01925at 486.278 kb on - strand, within CA265_RS01925at 486.279 kb on + strand, within CA265_RS01925at 486.279 kb on + strand, within CA265_RS01925at 486.280 kb on - strand, within CA265_RS01925at 486.280 kb on - strand, within CA265_RS01925at 486.329 kb on + strand, within CA265_RS01925at 486.334 kb on + strand, within CA265_RS01925at 486.363 kb on - strand, within CA265_RS01925at 486.454 kb on + strand, within CA265_RS01925at 486.454 kb on + strand, within CA265_RS01925at 486.455 kb on - strand, within CA265_RS01925at 486.456 kb on + strand, within CA265_RS01925at 486.456 kb on + strand, within CA265_RS01925at 486.462 kb on - strand, within CA265_RS01925at 486.526 kb on + strandat 486.630 kb on + strandat 486.651 kb on + strandat 486.690 kb on - strandat 486.695 kb on - strandat 486.725 kb on + strandat 486.725 kb on + strandat 486.725 kb on + strandat 486.726 kb on - strandat 486.730 kb on - strandat 486.774 kb on + strandat 486.774 kb on + strandat 486.774 kb on + strandat 486.798 kb on + strandat 486.798 kb on + strandat 486.798 kb on + strandat 486.799 kb on - strandat 486.799 kb on - strandat 486.811 kb on + strandat 486.829 kb on + strandat 486.850 kb on - strandat 486.900 kb on + strand, within CA265_RS01930at 486.946 kb on - strand, within CA265_RS01930at 487.014 kb on + strand, within CA265_RS01930at 487.015 kb on - strand, within CA265_RS01930at 487.025 kb on + strand, within CA265_RS01930at 487.059 kb on - strand, within CA265_RS01930at 487.067 kb on - strand, within CA265_RS01930at 487.145 kb on - strand, within CA265_RS01930at 487.222 kb on - strand, within CA265_RS01930at 487.251 kb on + strand, within CA265_RS01930at 487.293 kb on - strand, within CA265_RS01930at 487.414 kb on - strand, within CA265_RS01930at 487.414 kb on - strand, within CA265_RS01930at 487.417 kb on + strand, within CA265_RS01930at 487.446 kb on - strand, within CA265_RS01930at 487.632 kb on + strand, within CA265_RS01930at 487.633 kb on - strand, within CA265_RS01930at 487.635 kb on + strand, within CA265_RS01930at 487.635 kb on + strand, within CA265_RS01930at 487.666 kb on - strand, within CA265_RS01930at 487.737 kb on + strand, within CA265_RS01930at 487.761 kb on + strand, within CA265_RS01930at 487.808 kb on - strand, within CA265_RS01930at 487.846 kb on + strand, within CA265_RS01930at 487.860 kb on - strand, within CA265_RS01930at 487.860 kb on - strand, within CA265_RS01930at 487.860 kb on - strand, within CA265_RS01930at 487.909 kb on - strand, within CA265_RS01930at 487.915 kb on - strand, within CA265_RS01930at 487.931 kb on - strand, within CA265_RS01930at 487.958 kb on + strand, within CA265_RS01930at 487.959 kb on - strand, within CA265_RS01930at 487.966 kb on - strand, within CA265_RS01930at 487.971 kb on - strand, within CA265_RS01930at 488.004 kb on + strand, within CA265_RS01930at 488.031 kb on + strand, within CA265_RS01930at 488.077 kb on - strand, within CA265_RS01930at 488.080 kb on + strand, within CA265_RS01930at 488.158 kb on + strandat 488.159 kb on - strandat 488.159 kb on - strandat 488.224 kb on - strandat 488.296 kb on - strandat 488.496 kb on - strandat 488.549 kb on + strandat 488.549 kb on + strandat 488.613 kb on + strandat 488.613 kb on + strandat 488.613 kb on + strandat 488.626 kb on + strandat 488.646 kb on + strandat 488.646 kb on + strandat 488.647 kb on - strandat 488.662 kb on - strandat 488.666 kb on + strandat 488.670 kb on - strandat 488.759 kb on + strandat 488.812 kb on + strandat 488.852 kb on + strandat 488.852 kb on + strandat 488.853 kb on - strandat 488.976 kb on - strandat 488.996 kb on - strandat 489.029 kb on + strandat 489.133 kb on - strand, within CA265_RS01935at 489.166 kb on - strand, within CA265_RS01935at 489.178 kb on - strand, within CA265_RS01935at 489.192 kb on + strand, within CA265_RS01935at 489.206 kb on + strand, within CA265_RS01935at 489.206 kb on + strand, within CA265_RS01935at 489.207 kb on - strand, within CA265_RS01935at 489.207 kb on - strand, within CA265_RS01935at 489.208 kb on + strand, within CA265_RS01935at 489.209 kb on - strand, within CA265_RS01935at 489.299 kb on + strand, within CA265_RS01935at 489.299 kb on + strand, within CA265_RS01935at 489.299 kb on + strand, within CA265_RS01935at 489.299 kb on + strand, within CA265_RS01935at 489.300 kb on - strand, within CA265_RS01935

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Cobalt chloride 0.08 mM
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485,757 - CA265_RS01925 0.39 -0.3
485,757 - CA265_RS01925 0.39 +1.1
485,817 + CA265_RS01925 0.43 +0.2
485,913 + CA265_RS01925 0.50 -0.3
485,913 + CA265_RS01925 0.50 -0.3
485,914 - CA265_RS01925 0.50 +0.4
485,928 + CA265_RS01925 0.51 -0.4
486,003 - CA265_RS01925 0.56 +0.4
486,003 - CA265_RS01925 0.56 -0.1
486,052 + CA265_RS01925 0.59 -2.1
486,063 - CA265_RS01925 0.60 +0.2
486,088 + CA265_RS01925 0.62 +0.3
486,089 - CA265_RS01925 0.62 +1.6
486,089 - CA265_RS01925 0.62 +0.4
486,108 + CA265_RS01925 0.63 -0.3
486,140 - CA265_RS01925 0.66 -0.2
486,203 + CA265_RS01925 0.70 +0.9
486,204 - CA265_RS01925 0.70 -0.4
486,204 - CA265_RS01925 0.70 +0.0
486,251 + CA265_RS01925 0.73 -2.5
486,277 + CA265_RS01925 0.75 -0.9
486,277 + CA265_RS01925 0.75 +0.2
486,278 - CA265_RS01925 0.75 -0.0
486,279 + CA265_RS01925 0.75 -3.1
486,279 + CA265_RS01925 0.75 -0.5
486,280 - CA265_RS01925 0.75 +0.1
486,280 - CA265_RS01925 0.75 -0.3
486,329 + CA265_RS01925 0.79 -0.4
486,334 + CA265_RS01925 0.79 +0.2
486,363 - CA265_RS01925 0.81 +0.0
486,454 + CA265_RS01925 0.87 -0.4
486,454 + CA265_RS01925 0.87 +0.9
486,455 - CA265_RS01925 0.88 -0.2
486,456 + CA265_RS01925 0.88 -1.7
486,456 + CA265_RS01925 0.88 -1.7
486,462 - CA265_RS01925 0.88 +0.4
486,526 + -1.0
486,630 + +0.4
486,651 + -0.3
486,690 - +0.2
486,695 - -0.3
486,725 + -0.9
486,725 + -0.5
486,725 + -0.3
486,726 - -0.5
486,730 - -0.4
486,774 + -1.6
486,774 + +0.2
486,774 + -0.5
486,798 + -0.6
486,798 + -0.4
486,798 + -1.0
486,799 - -0.7
486,799 - -2.1
486,811 + -3.2
486,829 + +0.3
486,850 - -0.7
486,900 + CA265_RS01930 0.10 -0.3
486,946 - CA265_RS01930 0.13 -0.1
487,014 + CA265_RS01930 0.17 -1.1
487,015 - CA265_RS01930 0.18 -2.2
487,025 + CA265_RS01930 0.18 -0.5
487,059 - CA265_RS01930 0.20 -2.1
487,067 - CA265_RS01930 0.21 +0.1
487,145 - CA265_RS01930 0.26 -1.1
487,222 - CA265_RS01930 0.31 -1.5
487,251 + CA265_RS01930 0.33 -1.7
487,293 - CA265_RS01930 0.35 -1.3
487,414 - CA265_RS01930 0.43 -1.2
487,414 - CA265_RS01930 0.43 -0.7
487,417 + CA265_RS01930 0.43 -0.5
487,446 - CA265_RS01930 0.45 -1.5
487,632 + CA265_RS01930 0.57 -1.3
487,633 - CA265_RS01930 0.57 -2.5
487,635 + CA265_RS01930 0.57 -1.7
487,635 + CA265_RS01930 0.57 -3.6
487,666 - CA265_RS01930 0.59 -1.1
487,737 + CA265_RS01930 0.63 -0.6
487,761 + CA265_RS01930 0.65 -1.2
487,808 - CA265_RS01930 0.68 -0.2
487,846 + CA265_RS01930 0.70 -1.0
487,860 - CA265_RS01930 0.71 -1.0
487,860 - CA265_RS01930 0.71 -2.0
487,860 - CA265_RS01930 0.71 -0.6
487,909 - CA265_RS01930 0.74 -0.3
487,915 - CA265_RS01930 0.75 -1.5
487,931 - CA265_RS01930 0.76 -2.3
487,958 + CA265_RS01930 0.78 -1.5
487,959 - CA265_RS01930 0.78 -1.2
487,966 - CA265_RS01930 0.78 -1.8
487,971 - CA265_RS01930 0.78 -2.2
488,004 + CA265_RS01930 0.80 +0.6
488,031 + CA265_RS01930 0.82 -1.5
488,077 - CA265_RS01930 0.85 -0.9
488,080 + CA265_RS01930 0.85 -1.7
488,158 + -2.1
488,159 - +0.0
488,159 - -0.7
488,224 - -0.7
488,296 - -0.9
488,496 - +0.9
488,549 + -0.2
488,549 + -0.2
488,613 + +0.5
488,613 + -0.6
488,613 + +1.2
488,626 + +0.2
488,646 + -0.3
488,646 + +0.3
488,647 - -0.6
488,662 - +0.7
488,666 + -0.1
488,670 - +1.0
488,759 + -1.2
488,812 + -1.1
488,852 + +0.4
488,852 + +0.1
488,853 - +0.3
488,976 - +0.9
488,996 - +1.1
489,029 + +0.4
489,133 - CA265_RS01935 0.12 -0.1
489,166 - CA265_RS01935 0.13 +0.6
489,178 - CA265_RS01935 0.14 +0.4
489,192 + CA265_RS01935 0.14 +0.2
489,206 + CA265_RS01935 0.15 -0.2
489,206 + CA265_RS01935 0.15 -0.2
489,207 - CA265_RS01935 0.15 -0.3
489,207 - CA265_RS01935 0.15 -0.5
489,208 + CA265_RS01935 0.15 -0.2
489,209 - CA265_RS01935 0.15 -1.0
489,299 + CA265_RS01935 0.18 +0.8
489,299 + CA265_RS01935 0.18 -0.2
489,299 + CA265_RS01935 0.18 -0.0
489,299 + CA265_RS01935 0.18 +0.4
489,300 - CA265_RS01935 0.18 +0.6

Or see this region's nucleotide sequence