Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS00580

Experiment: R2A with Cobalt chloride 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS00575 and CA265_RS00580 are separated by 139 nucleotides CA265_RS00575: CA265_RS00575 - permease, at 126,441 to 127,865 _RS00575 CA265_RS00580: CA265_RS00580 - bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II, at 128,005 to 129,216 _RS00580 Position (kb) 128 129 130Strain fitness (log2 ratio) -2 -1 0 1at 127.864 kb on - strandat 127.879 kb on + strandat 127.883 kb on + strandat 127.883 kb on + strandat 127.884 kb on - strandat 127.884 kb on - strandat 127.924 kb on + strandat 127.967 kb on + strandat 127.974 kb on + strandat 129.231 kb on - strandat 129.281 kb on + strandat 129.284 kb on - strandat 129.359 kb on + strandat 129.421 kb on + strandat 129.421 kb on + strandat 129.440 kb on + strandat 129.455 kb on - strandat 129.455 kb on - strandat 129.513 kb on + strandat 129.517 kb on - strandat 129.539 kb on + strandat 129.543 kb on - strandat 129.547 kb on + strandat 129.653 kb on - strandat 129.705 kb on - strandat 129.708 kb on - strandat 129.750 kb on + strandat 129.751 kb on - strandat 129.801 kb on - strandat 129.801 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Cobalt chloride 0.08 mM
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127,864 - -0.1
127,879 + +0.3
127,883 + -0.4
127,883 + -0.8
127,884 - +0.4
127,884 - +1.2
127,924 + -0.8
127,967 + -2.4
127,974 + -0.3
129,231 - +0.7
129,281 + -0.8
129,284 - +0.2
129,359 + -0.5
129,421 + -1.4
129,421 + -0.8
129,440 + -0.2
129,455 - -0.3
129,455 - -1.5
129,513 + -0.4
129,517 - -0.5
129,539 + -0.0
129,543 - -0.5
129,547 + -0.8
129,653 - +0.4
129,705 - -0.1
129,708 - +0.4
129,750 + -0.5
129,751 - -0.4
129,801 - -0.8
129,801 - +0.0

Or see this region's nucleotide sequence