Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_29280

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_29275 and AO356_29280 are separated by 225 nucleotidesAO356_29280 and AO356_29285 are separated by 127 nucleotides AO356_29275: AO356_29275 - alkanesulfonate monooxygenase, at 6,808,395 to 6,809,483 _29275 AO356_29280: AO356_29280 - aldolase, at 6,809,709 to 6,810,503 _29280 AO356_29285: AO356_29285 - LysR family transcriptional regulator, at 6,810,631 to 6,811,536 _29285 Position (kb) 6809 6810 6811Strain fitness (log2 ratio) -1 0 1at 6808.753 kb on - strand, within AO356_29275at 6808.791 kb on + strand, within AO356_29275at 6808.791 kb on + strand, within AO356_29275at 6808.906 kb on + strand, within AO356_29275at 6808.914 kb on + strand, within AO356_29275at 6808.915 kb on - strand, within AO356_29275at 6809.344 kb on - strand, within AO356_29275at 6809.407 kb on - strandat 6809.481 kb on + strandat 6809.481 kb on + strandat 6809.494 kb on - strandat 6809.497 kb on + strandat 6809.497 kb on + strandat 6809.498 kb on - strandat 6809.524 kb on + strandat 6810.039 kb on - strand, within AO356_29280at 6810.149 kb on + strand, within AO356_29280at 6810.215 kb on - strand, within AO356_29280at 6810.215 kb on - strand, within AO356_29280at 6810.367 kb on + strand, within AO356_29280at 6810.367 kb on + strand, within AO356_29280at 6810.367 kb on + strand, within AO356_29280at 6810.368 kb on - strand, within AO356_29280at 6810.368 kb on - strand, within AO356_29280at 6810.368 kb on - strand, within AO356_29280at 6810.527 kb on - strandat 6810.546 kb on - strandat 6810.733 kb on + strand, within AO356_29285at 6810.734 kb on - strand, within AO356_29285at 6810.978 kb on - strand, within AO356_29285at 6811.180 kb on + strand, within AO356_29285at 6811.180 kb on + strand, within AO356_29285at 6811.180 kb on + strand, within AO356_29285at 6811.226 kb on - strand, within AO356_29285at 6811.344 kb on - strand, within AO356_29285

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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6,808,753 - AO356_29275 0.33 +1.2
6,808,791 + AO356_29275 0.36 +1.2
6,808,791 + AO356_29275 0.36 -0.1
6,808,906 + AO356_29275 0.47 -0.1
6,808,914 + AO356_29275 0.48 +0.3
6,808,915 - AO356_29275 0.48 +0.5
6,809,344 - AO356_29275 0.87 +0.6
6,809,407 - +0.2
6,809,481 + +0.4
6,809,481 + -0.1
6,809,494 - +0.2
6,809,497 + +1.1
6,809,497 + -0.8
6,809,498 - +1.3
6,809,524 + -0.5
6,810,039 - AO356_29280 0.42 +1.1
6,810,149 + AO356_29280 0.55 -0.3
6,810,215 - AO356_29280 0.64 -0.4
6,810,215 - AO356_29280 0.64 +0.7
6,810,367 + AO356_29280 0.83 -0.2
6,810,367 + AO356_29280 0.83 +0.3
6,810,367 + AO356_29280 0.83 -0.9
6,810,368 - AO356_29280 0.83 -1.1
6,810,368 - AO356_29280 0.83 -0.1
6,810,368 - AO356_29280 0.83 +0.1
6,810,527 - +0.4
6,810,546 - +0.0
6,810,733 + AO356_29285 0.11 +0.2
6,810,734 - AO356_29285 0.11 +0.4
6,810,978 - AO356_29285 0.38 -0.2
6,811,180 + AO356_29285 0.61 -0.9
6,811,180 + AO356_29285 0.61 +0.4
6,811,180 + AO356_29285 0.61 +1.6
6,811,226 - AO356_29285 0.66 +0.6
6,811,344 - AO356_29285 0.79 +0.2

Or see this region's nucleotide sequence