Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_05510

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_05500 and AO356_05505 overlap by 4 nucleotidesAO356_05505 and AO356_05510 are separated by 27 nucleotidesAO356_05510 and AO356_05515 are separated by 13 nucleotidesAO356_05515 and AO356_05520 are separated by 220 nucleotides AO356_05500: AO356_05500 - ABC transporter for L-Lysine, permease component 1 (from data), at 1,232,990 to 1,233,718 _05500 AO356_05505: AO356_05505 - ABC transporter for L-Lysine, permease component 2 (from data), at 1,233,715 to 1,234,425 _05505 AO356_05510: AO356_05510 - succinylglutamate desuccinylase, at 1,234,453 to 1,235,571 _05510 AO356_05515: AO356_05515 - ABC transporter for L-Lysine, ATPase component (from data), at 1,235,585 to 1,236,349 _05515 AO356_05520: AO356_05520 - DNA ligase-associated DEXH box helicase, at 1,236,570 to 1,239,056 _05520 Position (kb) 1234 1235 1236Strain fitness (log2 ratio) -1 0 1 2at 1233.593 kb on + strand, within AO356_05500at 1233.593 kb on + strand, within AO356_05500at 1233.594 kb on - strand, within AO356_05500at 1233.594 kb on - strand, within AO356_05500at 1233.594 kb on - strand, within AO356_05500at 1233.605 kb on + strand, within AO356_05500at 1233.606 kb on - strand, within AO356_05500at 1233.632 kb on + strand, within AO356_05500at 1233.632 kb on + strand, within AO356_05500at 1233.632 kb on + strand, within AO356_05500at 1233.632 kb on + strand, within AO356_05500at 1233.632 kb on + strand, within AO356_05500at 1233.632 kb on + strand, within AO356_05500at 1233.633 kb on - strand, within AO356_05500at 1233.633 kb on - strand, within AO356_05500at 1233.633 kb on - strand, within AO356_05500at 1233.633 kb on - strand, within AO356_05500at 1233.633 kb on - strand, within AO356_05500at 1233.736 kb on + strandat 1233.737 kb on - strandat 1233.737 kb on - strandat 1233.754 kb on + strandat 1233.754 kb on + strandat 1233.755 kb on - strandat 1233.874 kb on + strand, within AO356_05505at 1233.874 kb on + strand, within AO356_05505at 1233.874 kb on + strand, within AO356_05505at 1233.875 kb on - strand, within AO356_05505at 1233.875 kb on - strand, within AO356_05505at 1233.875 kb on - strand, within AO356_05505at 1233.875 kb on - strand, within AO356_05505at 1233.878 kb on + strand, within AO356_05505at 1233.879 kb on - strand, within AO356_05505at 1233.898 kb on + strand, within AO356_05505at 1233.898 kb on + strand, within AO356_05505at 1233.898 kb on + strand, within AO356_05505at 1233.898 kb on + strand, within AO356_05505at 1233.898 kb on + strand, within AO356_05505at 1233.898 kb on + strand, within AO356_05505at 1233.904 kb on + strand, within AO356_05505at 1233.904 kb on + strand, within AO356_05505at 1233.904 kb on + strand, within AO356_05505at 1233.905 kb on - strand, within AO356_05505at 1233.905 kb on - strand, within AO356_05505at 1233.905 kb on - strand, within AO356_05505at 1233.905 kb on - strand, within AO356_05505at 1233.905 kb on - strand, within AO356_05505at 1233.905 kb on - strand, within AO356_05505at 1233.905 kb on - strand, within AO356_05505at 1233.905 kb on - strand, within AO356_05505at 1233.905 kb on - strand, within AO356_05505at 1233.928 kb on + strand, within AO356_05505at 1233.928 kb on + strand, within AO356_05505at 1233.928 kb on + strand, within AO356_05505at 1233.929 kb on - strand, within AO356_05505at 1233.929 kb on - strand, within AO356_05505at 1233.949 kb on + strand, within AO356_05505at 1233.949 kb on + strand, within AO356_05505at 1233.950 kb on - strand, within AO356_05505at 1233.951 kb on + strand, within AO356_05505at 1233.961 kb on + strand, within AO356_05505at 1233.961 kb on + strand, within AO356_05505at 1233.961 kb on + strand, within AO356_05505at 1233.961 kb on + strand, within AO356_05505at 1233.961 kb on + strand, within AO356_05505at 1233.962 kb on - strand, within AO356_05505at 1233.962 kb on - strand, within AO356_05505at 1233.962 kb on - strand, within AO356_05505at 1233.962 kb on - strand, within AO356_05505at 1233.962 kb on - strand, within AO356_05505at 1233.962 kb on - strand, within AO356_05505at 1234.060 kb on + strand, within AO356_05505at 1234.060 kb on + strand, within AO356_05505at 1234.060 kb on + strand, within AO356_05505at 1234.061 kb on - strand, within AO356_05505at 1234.153 kb on + strand, within AO356_05505at 1234.154 kb on - strand, within AO356_05505at 1234.159 kb on + strand, within AO356_05505at 1234.159 kb on + strand, within AO356_05505at 1234.160 kb on - strand, within AO356_05505at 1234.199 kb on - strand, within AO356_05505at 1234.199 kb on - strand, within AO356_05505at 1234.201 kb on + strand, within AO356_05505at 1234.202 kb on - strand, within AO356_05505at 1234.202 kb on - strand, within AO356_05505at 1234.343 kb on - strand, within AO356_05505at 1234.343 kb on - strand, within AO356_05505at 1234.343 kb on - strand, within AO356_05505at 1234.552 kb on + strandat 1234.552 kb on + strandat 1234.552 kb on + strandat 1234.552 kb on + strandat 1234.553 kb on - strandat 1234.987 kb on + strand, within AO356_05510at 1234.987 kb on + strand, within AO356_05510at 1234.987 kb on + strand, within AO356_05510at 1234.987 kb on + strand, within AO356_05510at 1234.987 kb on + strand, within AO356_05510at 1234.988 kb on - strand, within AO356_05510at 1234.988 kb on - strand, within AO356_05510at 1234.988 kb on - strand, within AO356_05510at 1235.033 kb on - strand, within AO356_05510at 1235.033 kb on - strand, within AO356_05510at 1235.243 kb on - strand, within AO356_05510at 1235.362 kb on + strand, within AO356_05510at 1235.363 kb on - strand, within AO356_05510at 1235.474 kb on - strandat 1235.543 kb on - strandat 1235.558 kb on + strandat 1235.558 kb on + strandat 1235.558 kb on + strandat 1235.559 kb on - strandat 1235.588 kb on + strandat 1235.588 kb on + strandat 1235.588 kb on + strandat 1235.614 kb on + strandat 1235.614 kb on + strandat 1235.614 kb on + strandat 1235.614 kb on + strandat 1235.615 kb on - strandat 1235.615 kb on - strandat 1235.622 kb on - strandat 1235.713 kb on + strand, within AO356_05515at 1235.713 kb on + strand, within AO356_05515at 1235.714 kb on - strand, within AO356_05515at 1235.728 kb on + strand, within AO356_05515at 1235.728 kb on + strand, within AO356_05515at 1235.728 kb on + strand, within AO356_05515at 1235.728 kb on + strand, within AO356_05515at 1235.729 kb on - strand, within AO356_05515at 1235.729 kb on - strand, within AO356_05515at 1235.978 kb on + strand, within AO356_05515at 1235.978 kb on + strand, within AO356_05515at 1236.291 kb on + strandat 1236.291 kb on + strandat 1236.292 kb on - strandat 1236.347 kb on + strandat 1236.348 kb on - strandat 1236.508 kb on + strandat 1236.508 kb on + strandat 1236.508 kb on + strandat 1236.509 kb on - strandat 1236.521 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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1,233,593 + AO356_05500 0.83 +0.5
1,233,593 + AO356_05500 0.83 +2.2
1,233,594 - AO356_05500 0.83 +0.8
1,233,594 - AO356_05500 0.83 +0.2
1,233,594 - AO356_05500 0.83 -0.0
1,233,605 + AO356_05500 0.84 -0.0
1,233,606 - AO356_05500 0.84 +0.3
1,233,632 + AO356_05500 0.88 +0.3
1,233,632 + AO356_05500 0.88 +0.5
1,233,632 + AO356_05500 0.88 -0.5
1,233,632 + AO356_05500 0.88 +0.5
1,233,632 + AO356_05500 0.88 -1.2
1,233,632 + AO356_05500 0.88 +0.1
1,233,633 - AO356_05500 0.88 +0.3
1,233,633 - AO356_05500 0.88 +0.1
1,233,633 - AO356_05500 0.88 +0.5
1,233,633 - AO356_05500 0.88 -0.0
1,233,633 - AO356_05500 0.88 +0.7
1,233,736 + -0.8
1,233,737 - +0.2
1,233,737 - -0.1
1,233,754 + +0.7
1,233,754 + +0.8
1,233,755 - +1.5
1,233,874 + AO356_05505 0.22 +0.6
1,233,874 + AO356_05505 0.22 +0.4
1,233,874 + AO356_05505 0.22 +0.5
1,233,875 - AO356_05505 0.23 -0.0
1,233,875 - AO356_05505 0.23 -0.0
1,233,875 - AO356_05505 0.23 +0.1
1,233,875 - AO356_05505 0.23 -0.1
1,233,878 + AO356_05505 0.23 -0.1
1,233,879 - AO356_05505 0.23 +0.2
1,233,898 + AO356_05505 0.26 -0.4
1,233,898 + AO356_05505 0.26 -0.1
1,233,898 + AO356_05505 0.26 +0.0
1,233,898 + AO356_05505 0.26 +0.7
1,233,898 + AO356_05505 0.26 -0.2
1,233,898 + AO356_05505 0.26 +0.6
1,233,904 + AO356_05505 0.27 +1.6
1,233,904 + AO356_05505 0.27 -0.2
1,233,904 + AO356_05505 0.27 +1.0
1,233,905 - AO356_05505 0.27 +0.7
1,233,905 - AO356_05505 0.27 -0.3
1,233,905 - AO356_05505 0.27 -0.0
1,233,905 - AO356_05505 0.27 -0.8
1,233,905 - AO356_05505 0.27 +0.4
1,233,905 - AO356_05505 0.27 +0.6
1,233,905 - AO356_05505 0.27 -1.5
1,233,905 - AO356_05505 0.27 -0.3
1,233,905 - AO356_05505 0.27 +0.2
1,233,928 + AO356_05505 0.30 -0.4
1,233,928 + AO356_05505 0.30 -0.5
1,233,928 + AO356_05505 0.30 -0.4
1,233,929 - AO356_05505 0.30 -0.8
1,233,929 - AO356_05505 0.30 +0.6
1,233,949 + AO356_05505 0.33 -0.2
1,233,949 + AO356_05505 0.33 +0.4
1,233,950 - AO356_05505 0.33 +0.2
1,233,951 + AO356_05505 0.33 -0.5
1,233,961 + AO356_05505 0.35 +0.2
1,233,961 + AO356_05505 0.35 -1.0
1,233,961 + AO356_05505 0.35 -0.2
1,233,961 + AO356_05505 0.35 -0.1
1,233,961 + AO356_05505 0.35 +0.9
1,233,962 - AO356_05505 0.35 -1.4
1,233,962 - AO356_05505 0.35 -0.3
1,233,962 - AO356_05505 0.35 +0.1
1,233,962 - AO356_05505 0.35 -0.2
1,233,962 - AO356_05505 0.35 -0.7
1,233,962 - AO356_05505 0.35 +0.3
1,234,060 + AO356_05505 0.49 -0.5
1,234,060 + AO356_05505 0.49 -0.5
1,234,060 + AO356_05505 0.49 +0.3
1,234,061 - AO356_05505 0.49 +2.0
1,234,153 + AO356_05505 0.62 -0.0
1,234,154 - AO356_05505 0.62 +0.8
1,234,159 + AO356_05505 0.62 -0.5
1,234,159 + AO356_05505 0.62 +0.5
1,234,160 - AO356_05505 0.63 +0.1
1,234,199 - AO356_05505 0.68 -0.1
1,234,199 - AO356_05505 0.68 +0.8
1,234,201 + AO356_05505 0.68 +1.0
1,234,202 - AO356_05505 0.68 -0.5
1,234,202 - AO356_05505 0.68 -0.3
1,234,343 - AO356_05505 0.88 +0.6
1,234,343 - AO356_05505 0.88 +0.3
1,234,343 - AO356_05505 0.88 -0.1
1,234,552 + +0.2
1,234,552 + +0.8
1,234,552 + +0.8
1,234,552 + -0.4
1,234,553 - +0.0
1,234,987 + AO356_05510 0.48 +0.5
1,234,987 + AO356_05510 0.48 +0.5
1,234,987 + AO356_05510 0.48 +0.3
1,234,987 + AO356_05510 0.48 +1.0
1,234,987 + AO356_05510 0.48 -0.3
1,234,988 - AO356_05510 0.48 -0.5
1,234,988 - AO356_05510 0.48 -0.0
1,234,988 - AO356_05510 0.48 -0.4
1,235,033 - AO356_05510 0.52 +0.6
1,235,033 - AO356_05510 0.52 +1.1
1,235,243 - AO356_05510 0.71 +1.0
1,235,362 + AO356_05510 0.81 -0.9
1,235,363 - AO356_05510 0.81 +1.0
1,235,474 - +1.3
1,235,543 - -0.8
1,235,558 + +0.3
1,235,558 + +0.1
1,235,558 + -1.2
1,235,559 - +1.5
1,235,588 + -0.4
1,235,588 + -1.1
1,235,588 + +0.1
1,235,614 + -0.8
1,235,614 + -0.7
1,235,614 + -0.3
1,235,614 + -1.2
1,235,615 - -0.4
1,235,615 - +0.1
1,235,622 - -0.5
1,235,713 + AO356_05515 0.17 +0.3
1,235,713 + AO356_05515 0.17 +1.0
1,235,714 - AO356_05515 0.17 +1.1
1,235,728 + AO356_05515 0.19 -0.6
1,235,728 + AO356_05515 0.19 +0.5
1,235,728 + AO356_05515 0.19 +1.1
1,235,728 + AO356_05515 0.19 +0.5
1,235,729 - AO356_05515 0.19 -1.0
1,235,729 - AO356_05515 0.19 +0.8
1,235,978 + AO356_05515 0.51 +0.6
1,235,978 + AO356_05515 0.51 +1.1
1,236,291 + +0.8
1,236,291 + +0.8
1,236,292 - +1.3
1,236,347 + +0.7
1,236,348 - -1.2
1,236,508 + -0.3
1,236,508 + -0.1
1,236,508 + +0.3
1,236,509 - -0.0
1,236,521 - +0.6

Or see this region's nucleotide sequence