Experiment: Tween 20 (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004701 and ABIE53_004702 are separated by 328 nucleotides ABIE53_004702 and ABIE53_004703 are separated by 401 nucleotides
ABIE53_004701: ABIE53_004701 - membrane protein DedA with SNARE-associated domain/rhodanese-related sulfurtransferase, at 885,788 to 886,780
_004701
ABIE53_004702: ABIE53_004702 - hypothetical protein, at 887,109 to 887,360
_004702
ABIE53_004703: ABIE53_004703 - putative damage-inducible protein DinB, at 887,762 to 888,367
_004703
Position (kb) 887
888 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 886.209 kb on + strand, within ABIE53_004701 at 886.209 kb on + strand, within ABIE53_004701 at 886.209 kb on + strand, within ABIE53_004701 at 886.209 kb on + strand, within ABIE53_004701 at 886.210 kb on - strand, within ABIE53_004701 at 886.218 kb on + strand, within ABIE53_004701 at 886.218 kb on + strand, within ABIE53_004701 at 886.218 kb on + strand, within ABIE53_004701 at 886.218 kb on + strand, within ABIE53_004701 at 886.218 kb on + strand, within ABIE53_004701 at 886.218 kb on + strand, within ABIE53_004701 at 886.218 kb on + strand, within ABIE53_004701 at 886.218 kb on + strand, within ABIE53_004701 at 886.219 kb on - strand, within ABIE53_004701 at 886.219 kb on - strand, within ABIE53_004701 at 886.219 kb on - strand, within ABIE53_004701 at 886.219 kb on - strand, within ABIE53_004701 at 886.219 kb on - strand, within ABIE53_004701 at 886.219 kb on - strand, within ABIE53_004701 at 886.219 kb on - strand, within ABIE53_004701 at 886.219 kb on - strand, within ABIE53_004701 at 886.219 kb on - strand, within ABIE53_004701 at 886.362 kb on + strand, within ABIE53_004701 at 886.362 kb on + strand, within ABIE53_004701 at 886.362 kb on + strand, within ABIE53_004701 at 886.362 kb on + strand, within ABIE53_004701 at 886.362 kb on + strand, within ABIE53_004701 at 886.362 kb on + strand, within ABIE53_004701 at 886.362 kb on + strand, within ABIE53_004701 at 886.363 kb on - strand, within ABIE53_004701 at 886.363 kb on - strand, within ABIE53_004701 at 886.363 kb on - strand, within ABIE53_004701 at 886.363 kb on - strand, within ABIE53_004701 at 886.363 kb on - strand, within ABIE53_004701 at 886.363 kb on - strand, within ABIE53_004701 at 886.363 kb on - strand, within ABIE53_004701 at 886.543 kb on + strand, within ABIE53_004701 at 886.543 kb on + strand, within ABIE53_004701 at 886.543 kb on + strand, within ABIE53_004701 at 886.543 kb on + strand, within ABIE53_004701 at 886.543 kb on + strand, within ABIE53_004701 at 886.544 kb on - strand, within ABIE53_004701 at 886.544 kb on - strand, within ABIE53_004701 at 886.544 kb on - strand, within ABIE53_004701 at 886.544 kb on - strand, within ABIE53_004701 at 886.554 kb on + strand, within ABIE53_004701 at 886.554 kb on + strand, within ABIE53_004701 at 886.555 kb on - strand, within ABIE53_004701 at 886.555 kb on - strand, within ABIE53_004701 at 886.555 kb on - strand, within ABIE53_004701 at 886.555 kb on - strand, within ABIE53_004701 at 886.572 kb on + strand, within ABIE53_004701 at 886.572 kb on + strand, within ABIE53_004701 at 886.573 kb on - strand, within ABIE53_004701 at 886.573 kb on - strand, within ABIE53_004701 at 886.573 kb on - strand, within ABIE53_004701 at 886.755 kb on + strand at 886.755 kb on + strand at 886.755 kb on + strand at 886.755 kb on + strand at 886.755 kb on + strand at 886.756 kb on - strand at 886.756 kb on - strand at 886.756 kb on - strand at 886.756 kb on - strand at 886.756 kb on - strand at 886.756 kb on - strand at 886.756 kb on - strand at 886.775 kb on + strand at 886.775 kb on + strand at 886.775 kb on + strand at 886.775 kb on + strand at 886.776 kb on - strand at 886.776 kb on - strand at 886.776 kb on - strand at 886.776 kb on - strand at 886.776 kb on - strand at 886.776 kb on - strand at 886.787 kb on - strand at 886.787 kb on - strand at 886.787 kb on - strand at 886.787 kb on - strand at 886.819 kb on + strand at 886.819 kb on + strand at 886.847 kb on - strand at 886.891 kb on + strand at 886.932 kb on + strand at 886.932 kb on + strand at 886.932 kb on + strand at 886.933 kb on - strand at 886.933 kb on - strand at 886.933 kb on - strand at 886.933 kb on - strand at 886.935 kb on + strand at 886.935 kb on + strand at 886.935 kb on + strand at 886.936 kb on - strand at 886.936 kb on - strand at 886.936 kb on - strand at 886.936 kb on - strand at 886.950 kb on - strand at 886.969 kb on + strand at 886.969 kb on + strand at 886.969 kb on + strand at 886.970 kb on - strand at 886.970 kb on - strand at 887.073 kb on + strand at 887.073 kb on + strand at 887.074 kb on - strand at 887.195 kb on - strand, within ABIE53_004702 at 887.195 kb on - strand, within ABIE53_004702 at 887.314 kb on + strand, within ABIE53_004702 at 887.314 kb on + strand, within ABIE53_004702 at 887.314 kb on + strand, within ABIE53_004702 at 887.315 kb on - strand, within ABIE53_004702 at 887.315 kb on - strand, within ABIE53_004702 at 887.351 kb on + strand at 887.398 kb on + strand at 887.398 kb on + strand at 887.398 kb on + strand at 887.398 kb on + strand at 887.399 kb on - strand at 887.399 kb on - strand at 887.399 kb on - strand at 887.399 kb on - strand at 887.399 kb on - strand at 887.399 kb on - strand at 887.399 kb on - strand at 887.399 kb on - strand at 887.399 kb on - strand at 887.548 kb on + strand at 887.549 kb on - strand at 887.642 kb on + strand at 887.642 kb on + strand at 887.763 kb on + strand at 887.763 kb on + strand at 887.764 kb on - strand at 887.764 kb on - strand at 887.764 kb on - strand at 887.766 kb on - strand at 888.080 kb on + strand, within ABIE53_004703 at 888.080 kb on + strand, within ABIE53_004703 at 888.080 kb on + strand, within ABIE53_004703 at 888.080 kb on + strand, within ABIE53_004703 at 888.081 kb on - strand, within ABIE53_004703 at 888.081 kb on - strand, within ABIE53_004703 at 888.081 kb on - strand, within ABIE53_004703 at 888.081 kb on - strand, within ABIE53_004703 at 888.081 kb on - strand, within ABIE53_004703 at 888.081 kb on - strand, within ABIE53_004703 at 888.081 kb on - strand, within ABIE53_004703 at 888.081 kb on - strand, within ABIE53_004703 at 888.081 kb on - strand, within ABIE53_004703 at 888.099 kb on + strand, within ABIE53_004703 at 888.159 kb on + strand, within ABIE53_004703 at 888.159 kb on + strand, within ABIE53_004703 at 888.159 kb on + strand, within ABIE53_004703 at 888.160 kb on - strand, within ABIE53_004703 at 888.160 kb on - strand, within ABIE53_004703 at 888.162 kb on + strand, within ABIE53_004703 at 888.162 kb on + strand, within ABIE53_004703
Per-strain Table
Position Strand Gene LocusTag Fraction Tween 20 (C) remove 886,209 + ABIE53_004701 0.42 +0.7 886,209 + ABIE53_004701 0.42 -0.1 886,209 + ABIE53_004701 0.42 -0.4 886,209 + ABIE53_004701 0.42 -0.3 886,210 - ABIE53_004701 0.42 -0.4 886,218 + ABIE53_004701 0.43 +0.5 886,218 + ABIE53_004701 0.43 -1.2 886,218 + ABIE53_004701 0.43 +0.0 886,218 + ABIE53_004701 0.43 +0.1 886,218 + ABIE53_004701 0.43 -1.5 886,218 + ABIE53_004701 0.43 +4.4 886,218 + ABIE53_004701 0.43 +0.8 886,218 + ABIE53_004701 0.43 +0.2 886,219 - ABIE53_004701 0.43 -0.3 886,219 - ABIE53_004701 0.43 +0.2 886,219 - ABIE53_004701 0.43 +1.0 886,219 - ABIE53_004701 0.43 +0.6 886,219 - ABIE53_004701 0.43 -1.5 886,219 - ABIE53_004701 0.43 -0.7 886,219 - ABIE53_004701 0.43 +0.3 886,219 - ABIE53_004701 0.43 +1.0 886,219 - ABIE53_004701 0.43 +0.5 886,362 + ABIE53_004701 0.58 +0.5 886,362 + ABIE53_004701 0.58 +2.6 886,362 + ABIE53_004701 0.58 -0.4 886,362 + ABIE53_004701 0.58 +0.5 886,362 + ABIE53_004701 0.58 -0.4 886,362 + ABIE53_004701 0.58 -0.5 886,362 + ABIE53_004701 0.58 -0.8 886,363 - ABIE53_004701 0.58 +0.1 886,363 - ABIE53_004701 0.58 -0.1 886,363 - ABIE53_004701 0.58 +3.7 886,363 - ABIE53_004701 0.58 -2.7 886,363 - ABIE53_004701 0.58 -0.7 886,363 - ABIE53_004701 0.58 +2.0 886,363 - ABIE53_004701 0.58 +2.9 886,543 + ABIE53_004701 0.76 -1.3 886,543 + ABIE53_004701 0.76 -0.3 886,543 + ABIE53_004701 0.76 +0.7 886,543 + ABIE53_004701 0.76 +1.0 886,543 + ABIE53_004701 0.76 -0.2 886,544 - ABIE53_004701 0.76 +2.0 886,544 - ABIE53_004701 0.76 +0.0 886,544 - ABIE53_004701 0.76 -0.3 886,544 - ABIE53_004701 0.76 +0.1 886,554 + ABIE53_004701 0.77 +1.2 886,554 + ABIE53_004701 0.77 +1.5 886,555 - ABIE53_004701 0.77 -2.7 886,555 - ABIE53_004701 0.77 -1.1 886,555 - ABIE53_004701 0.77 +0.0 886,555 - ABIE53_004701 0.77 -0.5 886,572 + ABIE53_004701 0.79 -0.8 886,572 + ABIE53_004701 0.79 +1.2 886,573 - ABIE53_004701 0.79 +0.9 886,573 - ABIE53_004701 0.79 +2.0 886,573 - ABIE53_004701 0.79 -0.1 886,755 + -1.7 886,755 + -0.8 886,755 + -1.1 886,755 + -0.5 886,755 + +1.2 886,756 - +0.5 886,756 - -0.7 886,756 - +0.5 886,756 - -0.8 886,756 - -0.2 886,756 - -1.5 886,756 - +4.6 886,775 + -0.2 886,775 + +3.7 886,775 + +1.0 886,775 + +3.3 886,776 - -0.4 886,776 - -0.3 886,776 - +1.0 886,776 - +3.0 886,776 - +1.0 886,776 - -0.7 886,787 - -1.0 886,787 - -0.5 886,787 - -1.5 886,787 - +0.4 886,819 + +0.5 886,819 + -0.3 886,847 - -0.4 886,891 + +0.0 886,932 + +1.0 886,932 + -0.8 886,932 + +3.7 886,933 - -1.3 886,933 - +0.0 886,933 - -1.9 886,933 - +4.1 886,935 + -0.2 886,935 + +1.0 886,935 + -0.3 886,936 - -1.6 886,936 - +0.0 886,936 - -0.3 886,936 - +0.0 886,950 - -1.0 886,969 + +1.6 886,969 + -0.3 886,969 + +0.6 886,970 - +1.8 886,970 - +1.3 887,073 + -0.4 887,073 + -1.5 887,074 - +0.2 887,195 - ABIE53_004702 0.34 -0.3 887,195 - ABIE53_004702 0.34 -0.8 887,314 + ABIE53_004702 0.81 +1.0 887,314 + ABIE53_004702 0.81 -0.2 887,314 + ABIE53_004702 0.81 -1.7 887,315 - ABIE53_004702 0.82 -2.0 887,315 - ABIE53_004702 0.82 -1.7 887,351 + -2.0 887,398 + +0.9 887,398 + +0.5 887,398 + -0.0 887,398 + +0.5 887,399 - +2.4 887,399 - -0.0 887,399 - -0.2 887,399 - +1.0 887,399 - +0.5 887,399 - -1.8 887,399 - -0.2 887,399 - -2.0 887,399 - -0.3 887,548 + -0.5 887,549 - -0.5 887,642 + -1.0 887,642 + +1.5 887,763 + -1.3 887,763 + -1.9 887,764 - +0.6 887,764 - -0.7 887,764 - +0.2 887,766 - +2.0 888,080 + ABIE53_004703 0.52 -0.3 888,080 + ABIE53_004703 0.52 -0.3 888,080 + ABIE53_004703 0.52 -0.0 888,080 + ABIE53_004703 0.52 +0.8 888,081 - ABIE53_004703 0.53 +1.5 888,081 - ABIE53_004703 0.53 -2.3 888,081 - ABIE53_004703 0.53 -2.4 888,081 - ABIE53_004703 0.53 -0.5 888,081 - ABIE53_004703 0.53 +1.5 888,081 - ABIE53_004703 0.53 -0.3 888,081 - ABIE53_004703 0.53 -2.0 888,081 - ABIE53_004703 0.53 -1.2 888,081 - ABIE53_004703 0.53 -0.1 888,099 + ABIE53_004703 0.56 +0.7 888,159 + ABIE53_004703 0.66 +2.0 888,159 + ABIE53_004703 0.66 -1.1 888,159 + ABIE53_004703 0.66 -0.6 888,160 - ABIE53_004703 0.66 -1.7 888,160 - ABIE53_004703 0.66 +0.0 888,162 + ABIE53_004703 0.66 -1.5 888,162 + ABIE53_004703 0.66 -0.3
Or see this region's nucleotide sequence