Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_004260

Experiment: Tween 20 (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_004258 and ABIE53_004259 overlap by 151 nucleotidesABIE53_004259 and ABIE53_004260 are separated by 151 nucleotidesABIE53_004260 and ABIE53_004261 are separated by 26 nucleotides ABIE53_004258: ABIE53_004258 - beta-alanine--pyruvate transaminase, at 431,836 to 433,164 _004258 ABIE53_004259: ABIE53_004259 - hypothetical protein, at 433,014 to 433,739 _004259 ABIE53_004260: ABIE53_004260 - hypothetical protein, at 433,891 to 434,142 _004260 ABIE53_004261: ABIE53_004261 - branched-chain amino acid transport system substrate-binding protein, at 434,169 to 435,377 _004261 Position (kb) 433 434 435Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 433.015 kb on + strandat 433.015 kb on + strandat 433.016 kb on - strandat 433.063 kb on - strandat 433.063 kb on - strandat 433.163 kb on - strandat 433.163 kb on - strandat 433.241 kb on - strand, within ABIE53_004259at 433.839 kb on + strandat 433.839 kb on + strandat 433.839 kb on + strandat 433.840 kb on - strandat 433.840 kb on - strandat 433.840 kb on - strandat 433.840 kb on - strandat 433.840 kb on - strandat 433.894 kb on + strandat 433.923 kb on + strand, within ABIE53_004260at 433.924 kb on - strand, within ABIE53_004260at 433.952 kb on - strand, within ABIE53_004260at 434.102 kb on - strand, within ABIE53_004260at 434.102 kb on - strand, within ABIE53_004260at 434.102 kb on - strand, within ABIE53_004260at 434.140 kb on + strandat 434.170 kb on + strandat 434.170 kb on + strandat 434.171 kb on - strandat 434.171 kb on - strandat 434.171 kb on - strandat 434.171 kb on - strandat 434.234 kb on - strandat 434.234 kb on - strandat 434.234 kb on - strandat 434.240 kb on - strandat 434.287 kb on + strandat 434.288 kb on - strandat 434.323 kb on + strand, within ABIE53_004261at 434.323 kb on + strand, within ABIE53_004261at 434.324 kb on - strand, within ABIE53_004261at 434.324 kb on - strand, within ABIE53_004261at 434.324 kb on - strand, within ABIE53_004261at 434.324 kb on - strand, within ABIE53_004261at 434.345 kb on + strand, within ABIE53_004261at 434.345 kb on + strand, within ABIE53_004261at 434.346 kb on - strand, within ABIE53_004261at 434.440 kb on + strand, within ABIE53_004261at 434.467 kb on + strand, within ABIE53_004261at 434.468 kb on - strand, within ABIE53_004261at 434.476 kb on + strand, within ABIE53_004261at 434.476 kb on + strand, within ABIE53_004261at 434.477 kb on - strand, within ABIE53_004261at 434.477 kb on - strand, within ABIE53_004261at 434.477 kb on - strand, within ABIE53_004261at 434.488 kb on + strand, within ABIE53_004261at 434.531 kb on - strand, within ABIE53_004261at 434.590 kb on + strand, within ABIE53_004261at 434.590 kb on + strand, within ABIE53_004261at 434.591 kb on - strand, within ABIE53_004261at 434.649 kb on - strand, within ABIE53_004261at 434.649 kb on - strand, within ABIE53_004261at 434.649 kb on - strand, within ABIE53_004261at 434.854 kb on + strand, within ABIE53_004261at 434.854 kb on + strand, within ABIE53_004261at 434.854 kb on + strand, within ABIE53_004261at 434.855 kb on - strand, within ABIE53_004261at 434.855 kb on - strand, within ABIE53_004261at 434.927 kb on + strand, within ABIE53_004261at 434.927 kb on + strand, within ABIE53_004261at 434.927 kb on + strand, within ABIE53_004261at 434.928 kb on - strand, within ABIE53_004261at 434.928 kb on - strand, within ABIE53_004261at 434.928 kb on - strand, within ABIE53_004261at 434.928 kb on - strand, within ABIE53_004261at 434.929 kb on + strand, within ABIE53_004261at 434.929 kb on + strand, within ABIE53_004261at 434.929 kb on + strand, within ABIE53_004261at 434.929 kb on + strand, within ABIE53_004261at 434.929 kb on + strand, within ABIE53_004261at 434.929 kb on + strand, within ABIE53_004261at 434.930 kb on - strand, within ABIE53_004261at 434.930 kb on - strand, within ABIE53_004261at 434.930 kb on - strand, within ABIE53_004261at 434.930 kb on - strand, within ABIE53_004261at 434.930 kb on - strand, within ABIE53_004261at 434.930 kb on - strand, within ABIE53_004261at 434.930 kb on - strand, within ABIE53_004261at 434.930 kb on - strand, within ABIE53_004261at 434.930 kb on - strand, within ABIE53_004261at 434.950 kb on + strand, within ABIE53_004261at 434.950 kb on + strand, within ABIE53_004261at 434.950 kb on + strand, within ABIE53_004261at 434.956 kb on + strand, within ABIE53_004261at 434.956 kb on + strand, within ABIE53_004261at 434.956 kb on + strand, within ABIE53_004261at 434.957 kb on - strand, within ABIE53_004261at 434.957 kb on - strand, within ABIE53_004261at 434.957 kb on - strand, within ABIE53_004261

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C)
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433,015 + -0.0
433,015 + -2.7
433,016 - -0.7
433,063 - +4.4
433,063 - -0.5
433,163 - -0.9
433,163 - -0.8
433,241 - ABIE53_004259 0.31 -1.2
433,839 + +0.6
433,839 + +2.0
433,839 + -1.0
433,840 - -0.3
433,840 - -1.4
433,840 - +2.6
433,840 - -0.8
433,840 - -1.0
433,894 + +3.4
433,923 + ABIE53_004260 0.13 +3.0
433,924 - ABIE53_004260 0.13 +1.8
433,952 - ABIE53_004260 0.24 -1.4
434,102 - ABIE53_004260 0.84 +2.9
434,102 - ABIE53_004260 0.84 -0.5
434,102 - ABIE53_004260 0.84 -1.0
434,140 + +0.0
434,170 + +1.6
434,170 + -0.3
434,171 - +0.0
434,171 - +0.7
434,171 - -1.0
434,171 - +0.0
434,234 - -0.8
434,234 - -1.3
434,234 - -0.3
434,240 - -1.0
434,287 + +0.0
434,288 - -0.3
434,323 + ABIE53_004261 0.13 -0.3
434,323 + ABIE53_004261 0.13 -0.7
434,324 - ABIE53_004261 0.13 -1.9
434,324 - ABIE53_004261 0.13 -1.1
434,324 - ABIE53_004261 0.13 -0.9
434,324 - ABIE53_004261 0.13 +0.0
434,345 + ABIE53_004261 0.15 +0.5
434,345 + ABIE53_004261 0.15 -1.1
434,346 - ABIE53_004261 0.15 +0.2
434,440 + ABIE53_004261 0.22 -0.8
434,467 + ABIE53_004261 0.25 -1.0
434,468 - ABIE53_004261 0.25 +0.1
434,476 + ABIE53_004261 0.25 -0.3
434,476 + ABIE53_004261 0.25 -0.1
434,477 - ABIE53_004261 0.25 +0.1
434,477 - ABIE53_004261 0.25 +0.1
434,477 - ABIE53_004261 0.25 -3.4
434,488 + ABIE53_004261 0.26 +0.3
434,531 - ABIE53_004261 0.30 -0.9
434,590 + ABIE53_004261 0.35 -1.1
434,590 + ABIE53_004261 0.35 +0.2
434,591 - ABIE53_004261 0.35 -0.8
434,649 - ABIE53_004261 0.40 +1.1
434,649 - ABIE53_004261 0.40 -1.9
434,649 - ABIE53_004261 0.40 +0.5
434,854 + ABIE53_004261 0.57 +1.1
434,854 + ABIE53_004261 0.57 +0.2
434,854 + ABIE53_004261 0.57 -1.7
434,855 - ABIE53_004261 0.57 +0.8
434,855 - ABIE53_004261 0.57 -0.2
434,927 + ABIE53_004261 0.63 -1.2
434,927 + ABIE53_004261 0.63 -0.6
434,927 + ABIE53_004261 0.63 -0.8
434,928 - ABIE53_004261 0.63 -1.2
434,928 - ABIE53_004261 0.63 -0.9
434,928 - ABIE53_004261 0.63 -1.0
434,928 - ABIE53_004261 0.63 +1.1
434,929 + ABIE53_004261 0.63 -1.3
434,929 + ABIE53_004261 0.63 +1.1
434,929 + ABIE53_004261 0.63 +1.2
434,929 + ABIE53_004261 0.63 -2.2
434,929 + ABIE53_004261 0.63 +0.6
434,929 + ABIE53_004261 0.63 -0.3
434,930 - ABIE53_004261 0.63 +5.4
434,930 - ABIE53_004261 0.63 +0.1
434,930 - ABIE53_004261 0.63 -1.8
434,930 - ABIE53_004261 0.63 -0.9
434,930 - ABIE53_004261 0.63 +0.1
434,930 - ABIE53_004261 0.63 -2.2
434,930 - ABIE53_004261 0.63 -0.9
434,930 - ABIE53_004261 0.63 -0.5
434,930 - ABIE53_004261 0.63 -1.1
434,950 + ABIE53_004261 0.65 -0.5
434,950 + ABIE53_004261 0.65 +0.8
434,950 + ABIE53_004261 0.65 -0.5
434,956 + ABIE53_004261 0.65 -2.1
434,956 + ABIE53_004261 0.65 +1.1
434,956 + ABIE53_004261 0.65 -0.8
434,957 - ABIE53_004261 0.65 +0.3
434,957 - ABIE53_004261 0.65 -0.5
434,957 - ABIE53_004261 0.65 -0.6

Or see this region's nucleotide sequence