Experiment: D-Tagatose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc04198 and SMc04199 are separated by 185 nucleotides SMc04199 and SMc04200 overlap by 4 nucleotides SMc04200 and SMc04201 are separated by 15 nucleotides
SMc04198: SMc04198 - phage repressor protein, at 2,184,881 to 2,185,570
SMc04198
SMc04199: SMc04199 - hypothetical protein, at 2,185,756 to 2,186,085
SMc04199
SMc04200: SMc04200 - signal peptide protein, at 2,186,082 to 2,186,369
SMc04200
SMc04201: SMc04201 - signal peptide protein, at 2,186,385 to 2,187,110
SMc04201
Position (kb)
2185
2186
2187 Strain fitness (log2 ratio)
-1
0
1 at 2184.756 kb on + strand at 2184.756 kb on + strand at 2184.826 kb on + strand at 2185.588 kb on - strand at 2185.746 kb on + strand at 2186.046 kb on + strand, within SMc04199 at 2186.046 kb on + strand, within SMc04199 at 2186.050 kb on + strand, within SMc04199 at 2186.051 kb on - strand, within SMc04199 at 2186.101 kb on - strand at 2186.155 kb on - strand, within SMc04200 at 2186.155 kb on - strand, within SMc04200 at 2186.155 kb on - strand, within SMc04200 at 2186.157 kb on + strand, within SMc04200 at 2186.157 kb on + strand, within SMc04200 at 2186.157 kb on + strand, within SMc04200 at 2186.158 kb on - strand, within SMc04200 at 2186.332 kb on + strand, within SMc04200
Per-strain Table
Position Strand Gene LocusTag Fraction D-Tagatose (C) remove 2,184,756 + -0.0 2,184,756 + -0.1 2,184,826 + +0.5 2,185,588 - +0.9 2,185,746 + +0.1 2,186,046 + SMc04199 0.88 +0.3 2,186,046 + SMc04199 0.88 +0.3 2,186,050 + SMc04199 0.89 -0.1 2,186,051 - SMc04199 0.89 +1.2 2,186,101 - -0.3 2,186,155 - SMc04200 0.25 -1.3 2,186,155 - SMc04200 0.25 +0.4 2,186,155 - SMc04200 0.25 -0.5 2,186,157 + SMc04200 0.26 +0.1 2,186,157 + SMc04200 0.26 -1.5 2,186,157 + SMc04200 0.26 -0.1 2,186,158 - SMc04200 0.26 -0.3 2,186,332 + SMc04200 0.87 +1.6
Or see this region's nucleotide sequence