Experiment: D-Tagatose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02766 and SMc02765 are separated by 5 nucleotides SMc02765 and SMc02764 are separated by 53 nucleotides SMc02764 and SMc02763 are separated by 15 nucleotides
SMc02766: SMc02766 - tryptophan synthase subunit beta, at 28,048 to 29,268
SMc02766
SMc02765: SMc02765 - tryptophan synthase subunit alpha, at 29,274 to 30,113
SMc02765
SMc02764: SMc02764 - acetyl-CoA carboxylase subunit beta, at 30,167 to 31,081
SMc02764
SMc02763: SMc02763 - bifunctional folylpolyglutamate synthase/dihydrofolate synthase, at 31,097 to 32,440
SMc02763
Position (kb) 29
30
31 Strain fitness (log2 ratio) -9
-8
-7
-6
-5
-4
-3
-2
-1
0
1 at 28.303 kb on + strand, within SMc02766 at 28.304 kb on - strand, within SMc02766 at 28.480 kb on + strand, within SMc02766 at 28.481 kb on - strand, within SMc02766 at 28.481 kb on - strand, within SMc02766 at 28.481 kb on - strand, within SMc02766 at 28.481 kb on - strand, within SMc02766 at 28.481 kb on - strand, within SMc02766 at 28.532 kb on - strand, within SMc02766 at 28.636 kb on + strand, within SMc02766 at 28.636 kb on + strand, within SMc02766 at 28.636 kb on + strand, within SMc02766 at 28.636 kb on + strand, within SMc02766 at 28.637 kb on - strand, within SMc02766 at 28.640 kb on - strand, within SMc02766 at 28.646 kb on + strand, within SMc02766 at 28.646 kb on + strand, within SMc02766 at 28.647 kb on - strand, within SMc02766 at 28.647 kb on - strand, within SMc02766 at 28.936 kb on + strand, within SMc02766 at 28.936 kb on + strand, within SMc02766 at 28.937 kb on - strand, within SMc02766 at 28.937 kb on - strand, within SMc02766 at 28.937 kb on - strand, within SMc02766 at 28.937 kb on - strand, within SMc02766 at 28.937 kb on - strand, within SMc02766 at 29.053 kb on + strand, within SMc02766 at 29.053 kb on + strand, within SMc02766 at 29.053 kb on + strand, within SMc02766 at 29.053 kb on + strand, within SMc02766 at 29.054 kb on - strand, within SMc02766 at 29.266 kb on + strand at 29.267 kb on - strand at 29.341 kb on - strand at 29.580 kb on + strand, within SMc02765 at 29.584 kb on - strand, within SMc02765 at 29.584 kb on - strand, within SMc02765 at 29.595 kb on + strand, within SMc02765 at 29.595 kb on + strand, within SMc02765 at 29.595 kb on + strand, within SMc02765 at 29.595 kb on + strand, within SMc02765 at 29.595 kb on + strand, within SMc02765 at 29.595 kb on + strand, within SMc02765 at 29.595 kb on + strand, within SMc02765 at 29.596 kb on - strand, within SMc02765 at 29.596 kb on - strand, within SMc02765 at 29.596 kb on - strand, within SMc02765 at 29.596 kb on - strand, within SMc02765 at 29.596 kb on - strand, within SMc02765 at 29.597 kb on + strand, within SMc02765 at 29.597 kb on + strand, within SMc02765 at 29.597 kb on + strand, within SMc02765 at 29.598 kb on - strand, within SMc02765 at 29.598 kb on - strand, within SMc02765 at 29.598 kb on - strand, within SMc02765 at 29.601 kb on + strand, within SMc02765 at 29.602 kb on - strand, within SMc02765 at 29.602 kb on - strand, within SMc02765 at 29.602 kb on - strand, within SMc02765 at 29.602 kb on - strand, within SMc02765 at 29.799 kb on + strand, within SMc02765 at 29.802 kb on + strand, within SMc02765 at 29.802 kb on + strand, within SMc02765 at 29.803 kb on - strand, within SMc02765 at 29.803 kb on - strand, within SMc02765 at 29.885 kb on + strand, within SMc02765 at 29.886 kb on - strand, within SMc02765 at 29.886 kb on - strand, within SMc02765 at 31.084 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Tagatose (C) remove 28,303 + SMc02766 0.21 -2.3 28,304 - SMc02766 0.21 -2.7 28,480 + SMc02766 0.35 -4.1 28,481 - SMc02766 0.35 -2.7 28,481 - SMc02766 0.35 -5.4 28,481 - SMc02766 0.35 -3.3 28,481 - SMc02766 0.35 -5.9 28,481 - SMc02766 0.35 -5.4 28,532 - SMc02766 0.40 -4.3 28,636 + SMc02766 0.48 -7.6 28,636 + SMc02766 0.48 -6.7 28,636 + SMc02766 0.48 -3.8 28,636 + SMc02766 0.48 -5.9 28,637 - SMc02766 0.48 -6.0 28,640 - SMc02766 0.48 -6.5 28,646 + SMc02766 0.49 -1.1 28,646 + SMc02766 0.49 -4.6 28,647 - SMc02766 0.49 -6.1 28,647 - SMc02766 0.49 -5.7 28,936 + SMc02766 0.73 -4.6 28,936 + SMc02766 0.73 -3.0 28,937 - SMc02766 0.73 -4.6 28,937 - SMc02766 0.73 -5.3 28,937 - SMc02766 0.73 -4.6 28,937 - SMc02766 0.73 -5.7 28,937 - SMc02766 0.73 -6.4 29,053 + SMc02766 0.82 -8.1 29,053 + SMc02766 0.82 -6.4 29,053 + SMc02766 0.82 -4.0 29,053 + SMc02766 0.82 -2.8 29,054 - SMc02766 0.82 -1.5 29,266 + -1.3 29,267 - -5.4 29,341 - -3.5 29,580 + SMc02765 0.36 -3.8 29,584 - SMc02765 0.37 -3.5 29,584 - SMc02765 0.37 -4.7 29,595 + SMc02765 0.38 -6.0 29,595 + SMc02765 0.38 -5.5 29,595 + SMc02765 0.38 -6.3 29,595 + SMc02765 0.38 -3.4 29,595 + SMc02765 0.38 -6.9 29,595 + SMc02765 0.38 -6.1 29,595 + SMc02765 0.38 -7.0 29,596 - SMc02765 0.38 -4.7 29,596 - SMc02765 0.38 -2.5 29,596 - SMc02765 0.38 -3.3 29,596 - SMc02765 0.38 -7.2 29,596 - SMc02765 0.38 -2.6 29,597 + SMc02765 0.38 -4.9 29,597 + SMc02765 0.38 -3.0 29,597 + SMc02765 0.38 -0.9 29,598 - SMc02765 0.39 -3.4 29,598 - SMc02765 0.39 -4.7 29,598 - SMc02765 0.39 -3.6 29,601 + SMc02765 0.39 -4.4 29,602 - SMc02765 0.39 -4.5 29,602 - SMc02765 0.39 -4.4 29,602 - SMc02765 0.39 -4.7 29,602 - SMc02765 0.39 -4.3 29,799 + SMc02765 0.62 -2.2 29,802 + SMc02765 0.63 -5.2 29,802 + SMc02765 0.63 -5.9 29,803 - SMc02765 0.63 -6.6 29,803 - SMc02765 0.63 -9.2 29,885 + SMc02765 0.73 -4.2 29,886 - SMc02765 0.73 -6.8 29,886 - SMc02765 0.73 -6.3 31,084 + -0.2
Or see this region's nucleotide sequence