Experiment: D-Tagatose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02719 and SMc02720 are separated by 172 nucleotides SMc02720 and SMc02721 are separated by 413 nucleotides
SMc02719: SMc02719 - transposase, at 2,567,153 to 2,568,304
SMc02719
SMc02720: SMc02720 - ATP-dependent Clp protease proteolytic subunit, at 2,568,477 to 2,569,064
SMc02720
SMc02721: SMc02721 - outer membrane receptor protein, at 2,569,478 to 2,572,276
SMc02721
Position (kb)
2568
2569
2570 Strain fitness (log2 ratio)
-1
0
1 at 2568.094 kb on - strand, within SMc02719 at 2568.479 kb on - strand at 2568.521 kb on - strand at 2568.521 kb on - strand at 2568.521 kb on - strand at 2568.550 kb on + strand, within SMc02720 at 2568.757 kb on + strand, within SMc02720 at 2568.757 kb on + strand, within SMc02720 at 2568.758 kb on - strand at 2568.758 kb on - strand, within SMc02720 at 2569.101 kb on - strand at 2569.101 kb on - strand at 2569.151 kb on + strand at 2569.151 kb on + strand at 2569.152 kb on - strand at 2569.730 kb on + strand at 2569.730 kb on + strand at 2569.731 kb on - strand at 2569.759 kb on + strand, within SMc02721 at 2569.759 kb on + strand, within SMc02721 at 2569.770 kb on + strand, within SMc02721 at 2569.771 kb on - strand, within SMc02721 at 2569.771 kb on - strand, within SMc02721 at 2569.771 kb on - strand, within SMc02721 at 2569.869 kb on - strand, within SMc02721 at 2569.869 kb on - strand, within SMc02721 at 2569.871 kb on + strand, within SMc02721 at 2569.929 kb on + strand, within SMc02721 at 2569.982 kb on - strand, within SMc02721 at 2570.039 kb on + strand, within SMc02721 at 2570.040 kb on - strand, within SMc02721
Per-strain Table
Position Strand Gene LocusTag Fraction D-Tagatose (C) remove 2,568,094 - SMc02719 0.82 +0.1 2,568,479 - +0.1 2,568,521 - +0.4 2,568,521 - +1.1 2,568,521 - +0.5 2,568,550 + SMc02720 0.12 +0.2 2,568,757 + SMc02720 0.48 -0.1 2,568,757 + SMc02720 0.48 +0.7 2,568,758 - +0.8 2,568,758 - SMc02720 0.48 +0.6 2,569,101 - -0.1 2,569,101 - -0.5 2,569,151 + -0.2 2,569,151 + +0.5 2,569,152 - +0.1 2,569,730 + +0.1 2,569,730 + +0.6 2,569,731 - +0.0 2,569,759 + SMc02721 0.10 -0.5 2,569,759 + SMc02721 0.10 -0.5 2,569,770 + SMc02721 0.10 -0.1 2,569,771 - SMc02721 0.10 -0.0 2,569,771 - SMc02721 0.10 +0.2 2,569,771 - SMc02721 0.10 -0.0 2,569,869 - SMc02721 0.14 -0.7 2,569,869 - SMc02721 0.14 -0.5 2,569,871 + SMc02721 0.14 +0.5 2,569,929 + SMc02721 0.16 -0.3 2,569,982 - SMc02721 0.18 +0.2 2,570,039 + SMc02721 0.20 -0.1 2,570,040 - SMc02721 0.20 +0.3
Or see this region's nucleotide sequence