Experiment: D-Tagatose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01530 and SMc01529 are separated by 227 nucleotides SMc01529 and SMc01528 overlap by 4 nucleotides SMc01528 and SMc01527 overlap by 4 nucleotides
SMc01530: SMc01530 - transposase ISRM3, at 2,602,399 to 2,603,595
SMc01530
SMc01529: SMc01529 - peptide ABC transporter ATP-binding protein, at 2,603,823 to 2,604,590
SMc01529
SMc01528: SMc01528 - peptide ABC transporter ATP-binding protein, at 2,604,587 to 2,605,420
SMc01528
SMc01527: SMc01527 - peptide ABC transporter permease, at 2,605,417 to 2,606,349
SMc01527
Position (kb)
2603
2604
2605 Strain fitness (log2 ratio)
-1
0
1 at 2603.715 kb on - strand at 2603.792 kb on + strand at 2603.887 kb on + strand at 2603.887 kb on + strand at 2604.359 kb on - strand, within SMc01529 at 2604.676 kb on + strand, within SMc01528 at 2604.677 kb on - strand, within SMc01528 at 2604.677 kb on - strand, within SMc01528 at 2604.678 kb on + strand, within SMc01528 at 2604.738 kb on + strand, within SMc01528 at 2604.739 kb on - strand, within SMc01528 at 2604.739 kb on - strand, within SMc01528 at 2605.123 kb on - strand, within SMc01528 at 2605.361 kb on + strand at 2605.362 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Tagatose (C) remove 2,603,715 - -0.2 2,603,792 + -0.0 2,603,887 + -0.6 2,603,887 + +0.2 2,604,359 - SMc01529 0.70 +0.3 2,604,676 + SMc01528 0.11 -0.7 2,604,677 - SMc01528 0.11 -0.5 2,604,677 - SMc01528 0.11 +0.2 2,604,678 + SMc01528 0.11 -1.4 2,604,738 + SMc01528 0.18 -0.8 2,604,739 - SMc01528 0.18 -0.0 2,604,739 - SMc01528 0.18 +0.4 2,605,123 - SMc01528 0.64 +0.3 2,605,361 + -0.7 2,605,362 - -0.0
Or see this region's nucleotide sequence