Experiment: D-Tagatose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01370 and SMc01369 are separated by 486 nucleotides SMc01369 and SMc01368 are separated by 94 nucleotides SMc01368 and SMc01367 are separated by 12 nucleotides SMc01367 and SMc01366 overlap by 4 nucleotides
SMc01370: SMc01370 - response regulator PleD, at 1,410,107 to 1,411,474
SMc01370
SMc01369: SMc01369 - 50S ribosomal protein L33, at 1,411,961 to 1,412,128
SMc01369
SMc01368: SMc01368 - transport transmembrane protein, at 1,412,223 to 1,413,407
SMc01368
SMc01367: SMc01367 - hypothetical protein, at 1,413,420 to 1,414,136
SMc01367
SMc01366: SMc01366 - hypothetical protein, at 1,414,133 to 1,414,588
SMc01366
Position (kb)
1412
1413
1414 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1411.963 kb on - strand at 1412.266 kb on - strand at 1412.272 kb on + strand at 1412.454 kb on - strand, within SMc01368 at 1412.456 kb on - strand, within SMc01368 at 1412.456 kb on - strand, within SMc01368 at 1412.526 kb on - strand, within SMc01368 at 1412.579 kb on + strand, within SMc01368 at 1412.785 kb on + strand, within SMc01368 at 1412.786 kb on - strand, within SMc01368 at 1413.104 kb on - strand, within SMc01368 at 1413.104 kb on - strand, within SMc01368 at 1413.104 kb on - strand, within SMc01368 at 1413.106 kb on + strand, within SMc01368 at 1413.461 kb on - strand at 1413.698 kb on + strand, within SMc01367 at 1413.698 kb on + strand, within SMc01367 at 1413.713 kb on + strand, within SMc01367 at 1413.714 kb on - strand, within SMc01367 at 1413.716 kb on - strand, within SMc01367 at 1413.716 kb on - strand, within SMc01367 at 1413.786 kb on + strand, within SMc01367 at 1413.828 kb on + strand, within SMc01367 at 1413.961 kb on + strand, within SMc01367 at 1413.961 kb on + strand, within SMc01367 at 1413.961 kb on + strand, within SMc01367 at 1413.962 kb on - strand, within SMc01367 at 1414.310 kb on - strand, within SMc01366 at 1414.336 kb on + strand, within SMc01366 at 1414.336 kb on + strand, within SMc01366 at 1414.338 kb on + strand, within SMc01366 at 1414.338 kb on + strand, within SMc01366 at 1414.379 kb on - strand, within SMc01366 at 1414.379 kb on - strand, within SMc01366 at 1414.380 kb on + strand, within SMc01366
Per-strain Table
Position Strand Gene LocusTag Fraction D-Tagatose (C) remove 1,411,963 - -0.5 1,412,266 - +1.0 1,412,272 + -0.8 1,412,454 - SMc01368 0.19 -3.4 1,412,456 - SMc01368 0.20 -2.1 1,412,456 - SMc01368 0.20 -0.3 1,412,526 - SMc01368 0.26 -2.3 1,412,579 + SMc01368 0.30 -2.2 1,412,785 + SMc01368 0.47 -1.5 1,412,786 - SMc01368 0.48 -2.0 1,413,104 - SMc01368 0.74 -0.7 1,413,104 - SMc01368 0.74 -1.5 1,413,104 - SMc01368 0.74 -0.5 1,413,106 + SMc01368 0.75 -1.3 1,413,461 - +0.0 1,413,698 + SMc01367 0.39 -4.1 1,413,698 + SMc01367 0.39 -1.0 1,413,713 + SMc01367 0.41 -1.8 1,413,714 - SMc01367 0.41 -0.7 1,413,716 - SMc01367 0.41 +0.7 1,413,716 - SMc01367 0.41 +0.2 1,413,786 + SMc01367 0.51 -0.5 1,413,828 + SMc01367 0.57 -0.5 1,413,961 + SMc01367 0.75 +2.5 1,413,961 + SMc01367 0.75 -0.4 1,413,961 + SMc01367 0.75 +0.3 1,413,962 - SMc01367 0.76 +0.3 1,414,310 - SMc01366 0.39 -0.5 1,414,336 + SMc01366 0.45 -0.6 1,414,336 + SMc01366 0.45 -0.4 1,414,338 + SMc01366 0.45 +0.1 1,414,338 + SMc01366 0.45 -0.8 1,414,379 - SMc01366 0.54 -0.2 1,414,379 - SMc01366 0.54 -0.9 1,414,380 + SMc01366 0.54 -0.2
Or see this region's nucleotide sequence