Strain Fitness in Sinorhizobium meliloti 1021 around SMc01368

Experiment: D-Tagatose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01370 and SMc01369 are separated by 486 nucleotidesSMc01369 and SMc01368 are separated by 94 nucleotidesSMc01368 and SMc01367 are separated by 12 nucleotidesSMc01367 and SMc01366 overlap by 4 nucleotides SMc01370: SMc01370 - response regulator PleD, at 1,410,107 to 1,411,474 SMc01370 SMc01369: SMc01369 - 50S ribosomal protein L33, at 1,411,961 to 1,412,128 SMc01369 SMc01368: SMc01368 - transport transmembrane protein, at 1,412,223 to 1,413,407 SMc01368 SMc01367: SMc01367 - hypothetical protein, at 1,413,420 to 1,414,136 SMc01367 SMc01366: SMc01366 - hypothetical protein, at 1,414,133 to 1,414,588 SMc01366 Position (kb) 1412 1413 1414Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1411.963 kb on - strandat 1412.266 kb on - strandat 1412.272 kb on + strandat 1412.454 kb on - strand, within SMc01368at 1412.456 kb on - strand, within SMc01368at 1412.456 kb on - strand, within SMc01368at 1412.526 kb on - strand, within SMc01368at 1412.579 kb on + strand, within SMc01368at 1412.785 kb on + strand, within SMc01368at 1412.786 kb on - strand, within SMc01368at 1413.104 kb on - strand, within SMc01368at 1413.104 kb on - strand, within SMc01368at 1413.104 kb on - strand, within SMc01368at 1413.106 kb on + strand, within SMc01368at 1413.461 kb on - strandat 1413.698 kb on + strand, within SMc01367at 1413.698 kb on + strand, within SMc01367at 1413.713 kb on + strand, within SMc01367at 1413.714 kb on - strand, within SMc01367at 1413.716 kb on - strand, within SMc01367at 1413.716 kb on - strand, within SMc01367at 1413.786 kb on + strand, within SMc01367at 1413.828 kb on + strand, within SMc01367at 1413.961 kb on + strand, within SMc01367at 1413.961 kb on + strand, within SMc01367at 1413.961 kb on + strand, within SMc01367at 1413.962 kb on - strand, within SMc01367at 1414.310 kb on - strand, within SMc01366at 1414.336 kb on + strand, within SMc01366at 1414.336 kb on + strand, within SMc01366at 1414.338 kb on + strand, within SMc01366at 1414.338 kb on + strand, within SMc01366at 1414.379 kb on - strand, within SMc01366at 1414.379 kb on - strand, within SMc01366at 1414.380 kb on + strand, within SMc01366

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Tagatose (C)
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1,411,963 - -0.5
1,412,266 - +1.0
1,412,272 + -0.8
1,412,454 - SMc01368 0.19 -3.4
1,412,456 - SMc01368 0.20 -2.1
1,412,456 - SMc01368 0.20 -0.3
1,412,526 - SMc01368 0.26 -2.3
1,412,579 + SMc01368 0.30 -2.2
1,412,785 + SMc01368 0.47 -1.5
1,412,786 - SMc01368 0.48 -2.0
1,413,104 - SMc01368 0.74 -0.7
1,413,104 - SMc01368 0.74 -1.5
1,413,104 - SMc01368 0.74 -0.5
1,413,106 + SMc01368 0.75 -1.3
1,413,461 - +0.0
1,413,698 + SMc01367 0.39 -4.1
1,413,698 + SMc01367 0.39 -1.0
1,413,713 + SMc01367 0.41 -1.8
1,413,714 - SMc01367 0.41 -0.7
1,413,716 - SMc01367 0.41 +0.7
1,413,716 - SMc01367 0.41 +0.2
1,413,786 + SMc01367 0.51 -0.5
1,413,828 + SMc01367 0.57 -0.5
1,413,961 + SMc01367 0.75 +2.5
1,413,961 + SMc01367 0.75 -0.4
1,413,961 + SMc01367 0.75 +0.3
1,413,962 - SMc01367 0.76 +0.3
1,414,310 - SMc01366 0.39 -0.5
1,414,336 + SMc01366 0.45 -0.6
1,414,336 + SMc01366 0.45 -0.4
1,414,338 + SMc01366 0.45 +0.1
1,414,338 + SMc01366 0.45 -0.8
1,414,379 - SMc01366 0.54 -0.2
1,414,379 - SMc01366 0.54 -0.9
1,414,380 + SMc01366 0.54 -0.2

Or see this region's nucleotide sequence