Experiment: D-Tagatose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01256 and SMc00995 are separated by 86 nucleotides SMc00995 and SMc01068 are separated by 671 nucleotides
SMc01256: SMc01256 - L-serine dehydratase, at 1,519,212 to 1,520,612
SMc01256
SMc00995: SMc00995 - hypothetical protein, at 1,520,699 to 1,521,133
SMc00995
SMc01068: SMc01068 - hypothetical protein, at 1,521,805 to 1,522,074
SMc01068
Position (kb)
1520
1521
1522 Strain fitness (log2 ratio)
-1
0
1 at 1519.738 kb on + strand, within SMc01256 at 1519.739 kb on - strand, within SMc01256 at 1519.749 kb on + strand, within SMc01256 at 1519.749 kb on + strand, within SMc01256 at 1520.047 kb on - strand, within SMc01256 at 1520.143 kb on - strand, within SMc01256 at 1520.145 kb on + strand, within SMc01256 at 1520.146 kb on - strand, within SMc01256 at 1520.146 kb on - strand, within SMc01256 at 1520.519 kb on + strand at 1520.520 kb on - strand at 1520.520 kb on - strand at 1520.520 kb on - strand at 1520.520 kb on - strand at 1520.563 kb on - strand at 1520.842 kb on + strand, within SMc00995 at 1520.842 kb on + strand, within SMc00995 at 1520.843 kb on - strand, within SMc00995 at 1520.891 kb on + strand, within SMc00995 at 1521.029 kb on + strand, within SMc00995 at 1521.129 kb on + strand at 1521.129 kb on + strand at 1521.130 kb on - strand at 1521.227 kb on - strand at 1521.227 kb on - strand at 1521.227 kb on - strand at 1521.227 kb on - strand at 1521.227 kb on - strand at 1521.607 kb on + strand at 1521.607 kb on + strand at 1521.607 kb on + strand at 1521.790 kb on - strand at 1521.790 kb on - strand at 1521.807 kb on - strand at 1522.087 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Tagatose (C) remove 1,519,738 + SMc01256 0.38 -0.5 1,519,739 - SMc01256 0.38 -0.0 1,519,749 + SMc01256 0.38 -0.4 1,519,749 + SMc01256 0.38 +0.2 1,520,047 - SMc01256 0.60 +0.5 1,520,143 - SMc01256 0.66 +0.2 1,520,145 + SMc01256 0.67 -0.2 1,520,146 - SMc01256 0.67 +0.6 1,520,146 - SMc01256 0.67 +0.0 1,520,519 + +0.0 1,520,520 - -0.0 1,520,520 - +0.4 1,520,520 - +0.3 1,520,520 - -0.4 1,520,563 - -0.2 1,520,842 + SMc00995 0.33 +0.5 1,520,842 + SMc00995 0.33 +0.1 1,520,843 - SMc00995 0.33 +0.6 1,520,891 + SMc00995 0.44 +0.2 1,521,029 + SMc00995 0.76 +0.1 1,521,129 + +0.1 1,521,129 + -0.6 1,521,130 - -0.4 1,521,227 - -1.2 1,521,227 - +0.1 1,521,227 - -0.5 1,521,227 - +0.6 1,521,227 - +0.1 1,521,607 + +0.3 1,521,607 + -0.8 1,521,607 + +0.2 1,521,790 - +0.2 1,521,790 - +0.9 1,521,807 - -1.1 1,522,087 - +1.3
Or see this region's nucleotide sequence