Experiment: D-Tagatose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00388 and SMc00389 are separated by 97 nucleotides SMc00389 and SMc00390 are separated by 4 nucleotides SMc00390 and SMc00391 are separated by 103 nucleotides SMc00391 and SMc00392 are separated by 43 nucleotides SMc00392 and SMc00393 overlap by 1 nucleotides
SMc00388: SMc00388 - hypothetical protein, at 340,840 to 341,901
SMc00388
SMc00389: SMc00389 - hypothetical protein, at 341,999 to 342,586
SMc00389
SMc00390: SMc00390 - hypothetical protein, at 342,591 to 342,920
SMc00390
SMc00391: SMc00391 - hypothetical protein, at 343,024 to 343,218
SMc00391
SMc00392: SMc00392 - hypothetical protein, at 343,262 to 343,504
SMc00392
SMc00393: SMc00393 - hypothetical protein, at 343,504 to 343,929
SMc00393
Position (kb) 341
342
343 Strain fitness (log2 ratio) -2
-1
0
1 at 341.053 kb on - strand, within SMc00388 at 341.071 kb on - strand, within SMc00388 at 341.071 kb on - strand, within SMc00388 at 341.071 kb on - strand, within SMc00388 at 341.103 kb on + strand, within SMc00388 at 341.427 kb on + strand, within SMc00388 at 341.429 kb on + strand, within SMc00388 at 341.429 kb on + strand, within SMc00388 at 341.429 kb on + strand, within SMc00388 at 341.429 kb on + strand, within SMc00388 at 341.430 kb on - strand, within SMc00388 at 341.430 kb on - strand, within SMc00388 at 341.435 kb on + strand, within SMc00388 at 341.435 kb on + strand, within SMc00388 at 341.436 kb on - strand, within SMc00388 at 341.796 kb on + strand at 341.798 kb on + strand at 341.798 kb on + strand at 341.798 kb on + strand at 341.798 kb on + strand at 341.798 kb on + strand at 341.798 kb on + strand at 341.798 kb on + strand at 341.798 kb on + strand at 341.798 kb on + strand at 341.799 kb on - strand at 341.934 kb on - strand at 342.060 kb on + strand, within SMc00389 at 342.061 kb on - strand, within SMc00389 at 342.190 kb on - strand, within SMc00389 at 342.269 kb on - strand, within SMc00389 at 342.569 kb on + strand at 342.629 kb on - strand, within SMc00390 at 342.652 kb on + strand, within SMc00390 at 342.653 kb on - strand, within SMc00390 at 342.653 kb on - strand, within SMc00390 at 342.653 kb on - strand, within SMc00390 at 342.955 kb on + strand at 342.955 kb on + strand at 342.956 kb on - strand at 342.956 kb on - strand at 342.956 kb on - strand at 342.956 kb on - strand at 342.957 kb on + strand at 342.957 kb on + strand at 342.957 kb on + strand at 342.957 kb on + strand at 342.957 kb on + strand at 342.958 kb on - strand at 342.958 kb on - strand at 342.958 kb on - strand at 342.958 kb on - strand at 342.958 kb on - strand at 342.959 kb on + strand at 342.959 kb on + strand at 342.959 kb on + strand at 342.959 kb on + strand at 342.960 kb on - strand at 342.960 kb on - strand at 342.960 kb on - strand at 342.962 kb on + strand at 342.963 kb on - strand at 343.014 kb on + strand at 343.014 kb on + strand at 343.015 kb on - strand at 343.150 kb on + strand, within SMc00391 at 343.232 kb on + strand at 343.232 kb on + strand at 343.242 kb on + strand at 343.243 kb on - strand at 343.499 kb on + strand at 343.499 kb on + strand at 343.510 kb on + strand at 343.511 kb on - strand at 343.511 kb on - strand at 343.511 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Tagatose (C) remove 341,053 - SMc00388 0.20 -0.0 341,071 - SMc00388 0.22 -0.7 341,071 - SMc00388 0.22 -0.3 341,071 - SMc00388 0.22 +0.1 341,103 + SMc00388 0.25 -0.3 341,427 + SMc00388 0.55 +0.3 341,429 + SMc00388 0.55 -0.9 341,429 + SMc00388 0.55 -0.4 341,429 + SMc00388 0.55 +0.3 341,429 + SMc00388 0.55 -0.2 341,430 - SMc00388 0.56 -0.2 341,430 - SMc00388 0.56 +0.1 341,435 + SMc00388 0.56 -0.1 341,435 + SMc00388 0.56 -0.3 341,436 - SMc00388 0.56 +0.0 341,796 + -0.0 341,798 + -0.4 341,798 + -0.1 341,798 + -0.1 341,798 + +0.1 341,798 + -0.2 341,798 + -0.2 341,798 + +0.6 341,798 + -0.3 341,798 + +0.3 341,799 - +1.0 341,934 - -0.3 342,060 + SMc00389 0.10 -0.1 342,061 - SMc00389 0.11 +0.4 342,190 - SMc00389 0.32 +0.1 342,269 - SMc00389 0.46 +0.7 342,569 + +0.0 342,629 - SMc00390 0.12 -0.4 342,652 + SMc00390 0.18 -0.5 342,653 - SMc00390 0.19 +0.5 342,653 - SMc00390 0.19 -2.0 342,653 - SMc00390 0.19 -0.1 342,955 + +0.7 342,955 + -0.2 342,956 - -0.1 342,956 - -0.3 342,956 - +1.3 342,956 - -0.1 342,957 + -0.3 342,957 + -0.0 342,957 + -0.5 342,957 + +0.0 342,957 + +0.1 342,958 - +1.3 342,958 - +1.7 342,958 - -0.4 342,958 - -0.0 342,958 - +0.5 342,959 + -0.1 342,959 + +0.2 342,959 + +0.3 342,959 + +0.1 342,960 - -0.1 342,960 - +0.0 342,960 - -0.1 342,962 + -0.2 342,963 - +0.0 343,014 + +0.3 343,014 + -1.0 343,015 - +0.1 343,150 + SMc00391 0.65 -0.2 343,232 + +0.5 343,232 + +0.2 343,242 + +0.0 343,243 - -0.6 343,499 + -0.7 343,499 + -1.1 343,510 + -0.4 343,511 - +0.2 343,511 - +0.2 343,511 - -0.0
Or see this region's nucleotide sequence