Experiment: D-Tagatose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00005 and SMc00006 are separated by 144 nucleotides SMc00006 and SMc00070 are separated by 10 nucleotides SMc00070 and SMc00007 are separated by 440 nucleotides
SMc00005: SMc00005 - enoyl-ACP reductase, at 986,489 to 987,307
SMc00005
SMc00006: SMc00006 - hypothetical protein, at 987,452 to 988,036
SMc00006
SMc00070: SMc00070 - signal peptide protein, at 988,047 to 988,307
SMc00070
SMc00007: SMc00007 - chorismate synthase, at 988,748 to 989,845
SMc00007
Position (kb) 987
988
989 Strain fitness (log2 ratio) -1
0
1 at 987.382 kb on + strand at 987.383 kb on - strand at 987.461 kb on + strand at 987.461 kb on + strand at 987.461 kb on + strand at 987.462 kb on - strand at 987.462 kb on - strand at 987.462 kb on - strand at 987.462 kb on - strand at 987.743 kb on + strand, within SMc00006 at 987.744 kb on - strand, within SMc00006 at 987.842 kb on + strand, within SMc00006 at 987.842 kb on + strand, within SMc00006 at 987.843 kb on - strand, within SMc00006 at 988.049 kb on - strand at 988.162 kb on + strand, within SMc00070 at 988.163 kb on - strand, within SMc00070 at 988.163 kb on - strand, within SMc00070 at 988.385 kb on + strand at 988.386 kb on - strand at 988.449 kb on + strand at 988.449 kb on + strand at 988.624 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Tagatose (C) remove 987,382 + +0.3 987,383 - +0.2 987,461 + +0.5 987,461 + +0.2 987,461 + -0.0 987,462 - +0.2 987,462 - +0.3 987,462 - +0.1 987,462 - -0.2 987,743 + SMc00006 0.50 +0.4 987,744 - SMc00006 0.50 +0.7 987,842 + SMc00006 0.67 +1.1 987,842 + SMc00006 0.67 +0.2 987,843 - SMc00006 0.67 -0.1 988,049 - +1.1 988,162 + SMc00070 0.44 +0.2 988,163 - SMc00070 0.44 +0.1 988,163 - SMc00070 0.44 -0.1 988,385 + -0.5 988,386 - -0.2 988,449 + -0.3 988,449 + -0.2 988,624 + +0.1
Or see this region's nucleotide sequence