Experiment: D-Tagatose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1696 and SMa1697 are separated by 281 nucleotides SMa1697 and SMa1698 are separated by 260 nucleotides
SMa1696: SMa1696 - Sensor histidine kinase, at 955,590 to 956,786
SMa1696
SMa1697: SMa1697 - hypothetical protein, at 957,068 to 957,667
SMa1697
SMa1698: SMa1698 - syrB1 regulator, at 957,928 to 958,383
SMa1698
Position (kb) 957
958 Strain fitness (log2 ratio) -1
0
1
2 at 956.189 kb on + strand, within SMa1696 at 956.293 kb on + strand, within SMa1696 at 956.293 kb on + strand, within SMa1696 at 956.471 kb on - strand, within SMa1696 at 956.526 kb on - strand, within SMa1696 at 956.539 kb on - strand, within SMa1696 at 956.638 kb on + strand, within SMa1696 at 956.639 kb on - strand, within SMa1696 at 956.716 kb on + strand at 956.717 kb on - strand at 956.717 kb on - strand at 956.721 kb on + strand at 956.772 kb on - strand at 956.772 kb on - strand at 956.784 kb on + strand at 956.834 kb on + strand at 956.834 kb on + strand at 956.994 kb on - strand at 957.048 kb on - strand at 957.048 kb on - strand at 957.419 kb on + strand, within SMa1697 at 957.500 kb on + strand, within SMa1697 at 957.688 kb on - strand at 957.741 kb on - strand at 957.741 kb on - strand at 957.878 kb on - strand at 958.118 kb on + strand, within SMa1698 at 958.132 kb on + strand, within SMa1698 at 958.133 kb on - strand, within SMa1698 at 958.149 kb on + strand, within SMa1698 at 958.365 kb on + strand at 958.368 kb on + strand at 958.400 kb on + strand at 958.401 kb on - strand at 958.556 kb on - strand at 958.583 kb on + strand at 958.583 kb on + strand at 958.583 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Tagatose (C) remove 956,189 + SMa1696 0.50 -0.2 956,293 + SMa1696 0.59 +0.7 956,293 + SMa1696 0.59 -0.2 956,471 - SMa1696 0.74 +0.1 956,526 - SMa1696 0.78 +1.1 956,539 - SMa1696 0.79 +0.3 956,638 + SMa1696 0.88 +0.4 956,639 - SMa1696 0.88 +0.4 956,716 + +1.2 956,717 - +0.2 956,717 - -0.2 956,721 + -0.6 956,772 - -0.0 956,772 - +0.5 956,784 + +0.8 956,834 + -0.6 956,834 + +0.2 956,994 - -0.2 957,048 - +0.9 957,048 - -0.9 957,419 + SMa1697 0.58 +0.5 957,500 + SMa1697 0.72 +0.5 957,688 - -1.5 957,741 - -0.7 957,741 - +0.3 957,878 - +0.5 958,118 + SMa1698 0.42 +0.5 958,132 + SMa1698 0.45 -0.3 958,133 - SMa1698 0.45 -0.2 958,149 + SMa1698 0.48 +0.4 958,365 + -1.1 958,368 + -0.6 958,400 + -0.6 958,401 - -0.1 958,556 - -0.9 958,583 + +2.0 958,583 + -0.2 958,583 + +0.3
Or see this region's nucleotide sequence