Experiment: D-Tagatose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0414 and SMa0417 are separated by 60 nucleotides SMa0417 and SMa5020 are separated by 31 nucleotides SMa5020 and SMa0421 overlap by 13 nucleotides
SMa0414: SMa0414 - hypothetical protein, at 224,805 to 226,475
SMa0414
SMa0417: SMa0417 - hypothetical protein, at 226,536 to 227,393
SMa0417
SMa5020: SMa5020 - hypothetical protein, at 227,425 to 228,318
SMa5020
SMa0421: SMa0421 - hypothetical protein, at 228,306 to 228,824
SMa0421
Position (kb) 226
227
228 Strain fitness (log2 ratio) -1
0
1 at 225.543 kb on - strand, within SMa0414 at 225.650 kb on + strand, within SMa0414 at 225.651 kb on - strand, within SMa0414 at 225.837 kb on + strand, within SMa0414 at 225.838 kb on - strand, within SMa0414 at 225.838 kb on - strand, within SMa0414 at 225.951 kb on - strand, within SMa0414 at 226.026 kb on - strand, within SMa0414 at 226.026 kb on - strand, within SMa0414 at 226.026 kb on - strand, within SMa0414 at 226.053 kb on + strand, within SMa0414 at 226.126 kb on - strand, within SMa0414 at 226.126 kb on - strand, within SMa0414 at 226.191 kb on + strand, within SMa0414 at 226.378 kb on + strand at 226.439 kb on + strand at 226.591 kb on + strand at 227.042 kb on + strand, within SMa0417 at 227.097 kb on + strand, within SMa0417 at 227.148 kb on + strand, within SMa0417 at 227.325 kb on + strand at 227.325 kb on + strand at 227.326 kb on - strand at 227.326 kb on - strand at 227.735 kb on - strand, within SMa5020 at 227.802 kb on - strand, within SMa5020 at 227.975 kb on - strand, within SMa5020 at 228.094 kb on + strand, within SMa5020 at 228.112 kb on - strand, within SMa5020 at 228.121 kb on + strand, within SMa5020 at 228.122 kb on - strand, within SMa5020 at 228.122 kb on - strand, within SMa5020
Per-strain Table
Position Strand Gene LocusTag Fraction D-Tagatose (C) remove 225,543 - SMa0414 0.44 -0.1 225,650 + SMa0414 0.51 -0.2 225,651 - SMa0414 0.51 +0.6 225,837 + SMa0414 0.62 +0.2 225,838 - SMa0414 0.62 -0.0 225,838 - SMa0414 0.62 -0.7 225,951 - SMa0414 0.69 +0.3 226,026 - SMa0414 0.73 -0.1 226,026 - SMa0414 0.73 -0.1 226,026 - SMa0414 0.73 -0.2 226,053 + SMa0414 0.75 +0.1 226,126 - SMa0414 0.79 -0.1 226,126 - SMa0414 0.79 -0.1 226,191 + SMa0414 0.83 -0.3 226,378 + +0.6 226,439 + -0.1 226,591 + +0.0 227,042 + SMa0417 0.59 +0.5 227,097 + SMa0417 0.65 -0.1 227,148 + SMa0417 0.71 +0.6 227,325 + -0.5 227,325 + -0.5 227,326 - -0.3 227,326 - -0.0 227,735 - SMa5020 0.35 +0.4 227,802 - SMa5020 0.42 -0.3 227,975 - SMa5020 0.62 -0.5 228,094 + SMa5020 0.75 -1.1 228,112 - SMa5020 0.77 -0.0 228,121 + SMa5020 0.78 +0.3 228,122 - SMa5020 0.78 +0.6 228,122 - SMa5020 0.78 +0.3
Or see this region's nucleotide sequence