Experiment: D-Tagatose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20859 and SM_b21677 are separated by 81 nucleotides SM_b21677 and SM_b20860 overlap by 11 nucleotides SM_b20860 and SM_b20861 are separated by 98 nucleotides
SM_b20859: SM_b20859 - AraC family transcriptional regulator, at 1,263,877 to 1,264,827
_b20859
SM_b21677: SM_b21677 - signal peptide, at 1,264,909 to 1,265,277
_b21677
SM_b20860: SM_b20860 - non-heme haloperodidase, at 1,265,267 to 1,266,097
_b20860
SM_b20861: SM_b20861 - dehydrogenase, oxidoreductase FAD flavoprotein, at 1,266,196 to 1,267,401
_b20861
Position (kb)
1264
1265
1266 Strain fitness (log2 ratio)
-1
0
1 at 1264.008 kb on + strand, within SM_b20859 at 1264.008 kb on + strand, within SM_b20859 at 1264.008 kb on + strand, within SM_b20859 at 1264.008 kb on + strand, within SM_b20859 at 1264.009 kb on - strand, within SM_b20859 at 1264.009 kb on - strand, within SM_b20859 at 1264.009 kb on - strand, within SM_b20859 at 1264.009 kb on - strand, within SM_b20859 at 1264.112 kb on - strand, within SM_b20859 at 1264.112 kb on - strand, within SM_b20859 at 1264.124 kb on + strand, within SM_b20859 at 1264.125 kb on - strand, within SM_b20859 at 1264.125 kb on - strand, within SM_b20859 at 1264.191 kb on - strand, within SM_b20859 at 1264.255 kb on + strand, within SM_b20859 at 1264.256 kb on - strand, within SM_b20859 at 1264.300 kb on - strand, within SM_b20859 at 1264.300 kb on - strand, within SM_b20859 at 1264.300 kb on - strand, within SM_b20859 at 1264.350 kb on + strand, within SM_b20859 at 1264.350 kb on + strand, within SM_b20859 at 1264.350 kb on + strand, within SM_b20859 at 1264.350 kb on + strand, within SM_b20859 at 1264.350 kb on + strand, within SM_b20859 at 1264.351 kb on - strand, within SM_b20859 at 1264.351 kb on - strand, within SM_b20859 at 1264.351 kb on - strand, within SM_b20859 at 1264.396 kb on - strand, within SM_b20859 at 1264.408 kb on - strand, within SM_b20859 at 1264.408 kb on - strand, within SM_b20859 at 1264.427 kb on + strand, within SM_b20859 at 1264.427 kb on + strand, within SM_b20859 at 1264.464 kb on + strand, within SM_b20859 at 1264.465 kb on - strand, within SM_b20859 at 1264.465 kb on - strand, within SM_b20859 at 1264.465 kb on - strand, within SM_b20859 at 1264.670 kb on - strand, within SM_b20859 at 1264.689 kb on - strand, within SM_b20859 at 1264.745 kb on - strand at 1264.746 kb on + strand at 1264.746 kb on + strand at 1264.747 kb on - strand at 1264.747 kb on - strand at 1264.832 kb on + strand at 1264.832 kb on + strand at 1265.011 kb on - strand, within SM_b21677 at 1265.049 kb on + strand, within SM_b21677 at 1265.093 kb on - strand, within SM_b21677 at 1265.093 kb on - strand, within SM_b21677 at 1265.206 kb on - strand, within SM_b21677 at 1265.246 kb on + strand at 1265.246 kb on + strand at 1265.247 kb on - strand at 1265.247 kb on - strand at 1265.247 kb on - strand at 1265.247 kb on - strand at 1265.278 kb on + strand at 1265.278 kb on + strand at 1265.278 kb on + strand at 1265.279 kb on - strand at 1265.279 kb on - strand at 1265.279 kb on - strand at 1265.307 kb on - strand at 1265.490 kb on - strand, within SM_b20860 at 1265.490 kb on - strand, within SM_b20860 at 1265.490 kb on - strand, within SM_b20860 at 1265.490 kb on - strand, within SM_b20860 at 1265.623 kb on + strand, within SM_b20860 at 1265.624 kb on - strand, within SM_b20860 at 1265.624 kb on - strand, within SM_b20860 at 1265.624 kb on - strand, within SM_b20860 at 1265.691 kb on + strand, within SM_b20860 at 1265.703 kb on + strand, within SM_b20860 at 1265.703 kb on + strand, within SM_b20860 at 1265.738 kb on + strand, within SM_b20860 at 1265.765 kb on + strand, within SM_b20860 at 1265.855 kb on + strand, within SM_b20860 at 1265.855 kb on + strand, within SM_b20860 at 1265.856 kb on - strand, within SM_b20860 at 1265.863 kb on + strand, within SM_b20860 at 1265.863 kb on + strand, within SM_b20860 at 1265.864 kb on - strand, within SM_b20860 at 1265.996 kb on - strand, within SM_b20860 at 1266.017 kb on + strand at 1266.017 kb on + strand at 1266.058 kb on + strand at 1266.075 kb on + strand at 1266.075 kb on + strand at 1266.076 kb on - strand at 1266.235 kb on + strand at 1266.235 kb on + strand at 1266.235 kb on + strand at 1266.236 kb on - strand at 1266.236 kb on - strand at 1266.236 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Tagatose (C) remove 1,264,008 + SM_b20859 0.14 -0.2 1,264,008 + SM_b20859 0.14 +0.0 1,264,008 + SM_b20859 0.14 +0.4 1,264,008 + SM_b20859 0.14 +0.3 1,264,009 - SM_b20859 0.14 +0.3 1,264,009 - SM_b20859 0.14 -0.4 1,264,009 - SM_b20859 0.14 -0.2 1,264,009 - SM_b20859 0.14 +0.9 1,264,112 - SM_b20859 0.25 -0.0 1,264,112 - SM_b20859 0.25 -0.5 1,264,124 + SM_b20859 0.26 -1.3 1,264,125 - SM_b20859 0.26 -0.7 1,264,125 - SM_b20859 0.26 +0.4 1,264,191 - SM_b20859 0.33 -0.7 1,264,255 + SM_b20859 0.40 -0.9 1,264,256 - SM_b20859 0.40 -1.2 1,264,300 - SM_b20859 0.44 +1.1 1,264,300 - SM_b20859 0.44 +0.3 1,264,300 - SM_b20859 0.44 +0.1 1,264,350 + SM_b20859 0.50 +0.1 1,264,350 + SM_b20859 0.50 -0.8 1,264,350 + SM_b20859 0.50 -0.2 1,264,350 + SM_b20859 0.50 +0.5 1,264,350 + SM_b20859 0.50 -0.2 1,264,351 - SM_b20859 0.50 +0.1 1,264,351 - SM_b20859 0.50 -0.3 1,264,351 - SM_b20859 0.50 -0.0 1,264,396 - SM_b20859 0.55 -0.1 1,264,408 - SM_b20859 0.56 +1.0 1,264,408 - SM_b20859 0.56 -0.1 1,264,427 + SM_b20859 0.58 -0.5 1,264,427 + SM_b20859 0.58 +0.2 1,264,464 + SM_b20859 0.62 +0.1 1,264,465 - SM_b20859 0.62 +0.0 1,264,465 - SM_b20859 0.62 +0.1 1,264,465 - SM_b20859 0.62 -0.7 1,264,670 - SM_b20859 0.83 -0.5 1,264,689 - SM_b20859 0.85 +1.2 1,264,745 - +0.5 1,264,746 + -0.3 1,264,746 + -0.5 1,264,747 - -0.1 1,264,747 - -0.6 1,264,832 + +0.5 1,264,832 + -0.1 1,265,011 - SM_b21677 0.28 -0.3 1,265,049 + SM_b21677 0.38 -0.0 1,265,093 - SM_b21677 0.50 -0.6 1,265,093 - SM_b21677 0.50 -0.5 1,265,206 - SM_b21677 0.80 -0.8 1,265,246 + -0.8 1,265,246 + +0.8 1,265,247 - +0.1 1,265,247 - -0.2 1,265,247 - -0.8 1,265,247 - -0.3 1,265,278 + +0.1 1,265,278 + -0.1 1,265,278 + +0.0 1,265,279 - +0.1 1,265,279 - -0.1 1,265,279 - +0.5 1,265,307 - +0.2 1,265,490 - SM_b20860 0.27 +0.3 1,265,490 - SM_b20860 0.27 -0.5 1,265,490 - SM_b20860 0.27 -0.2 1,265,490 - SM_b20860 0.27 -1.1 1,265,623 + SM_b20860 0.43 +0.4 1,265,624 - SM_b20860 0.43 -0.5 1,265,624 - SM_b20860 0.43 +1.5 1,265,624 - SM_b20860 0.43 +0.2 1,265,691 + SM_b20860 0.51 -0.4 1,265,703 + SM_b20860 0.52 -0.4 1,265,703 + SM_b20860 0.52 -0.1 1,265,738 + SM_b20860 0.57 -0.1 1,265,765 + SM_b20860 0.60 +0.7 1,265,855 + SM_b20860 0.71 -0.1 1,265,855 + SM_b20860 0.71 +0.2 1,265,856 - SM_b20860 0.71 -0.5 1,265,863 + SM_b20860 0.72 -0.6 1,265,863 + SM_b20860 0.72 -1.6 1,265,864 - SM_b20860 0.72 +1.0 1,265,996 - SM_b20860 0.88 +1.2 1,266,017 + +0.2 1,266,017 + -0.1 1,266,058 + -0.1 1,266,075 + +0.5 1,266,075 + +1.7 1,266,076 - -1.3 1,266,235 + +0.8 1,266,235 + +0.2 1,266,235 + +0.0 1,266,236 - -1.1 1,266,236 - +0.4 1,266,236 - +0.6
Or see this region's nucleotide sequence