Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21677

Experiment: D-Tagatose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20859 and SM_b21677 are separated by 81 nucleotidesSM_b21677 and SM_b20860 overlap by 11 nucleotidesSM_b20860 and SM_b20861 are separated by 98 nucleotides SM_b20859: SM_b20859 - AraC family transcriptional regulator, at 1,263,877 to 1,264,827 _b20859 SM_b21677: SM_b21677 - signal peptide, at 1,264,909 to 1,265,277 _b21677 SM_b20860: SM_b20860 - non-heme haloperodidase, at 1,265,267 to 1,266,097 _b20860 SM_b20861: SM_b20861 - dehydrogenase, oxidoreductase FAD flavoprotein, at 1,266,196 to 1,267,401 _b20861 Position (kb) 1264 1265 1266Strain fitness (log2 ratio) -1 0 1at 1264.008 kb on + strand, within SM_b20859at 1264.008 kb on + strand, within SM_b20859at 1264.008 kb on + strand, within SM_b20859at 1264.008 kb on + strand, within SM_b20859at 1264.009 kb on - strand, within SM_b20859at 1264.009 kb on - strand, within SM_b20859at 1264.009 kb on - strand, within SM_b20859at 1264.009 kb on - strand, within SM_b20859at 1264.112 kb on - strand, within SM_b20859at 1264.112 kb on - strand, within SM_b20859at 1264.124 kb on + strand, within SM_b20859at 1264.125 kb on - strand, within SM_b20859at 1264.125 kb on - strand, within SM_b20859at 1264.191 kb on - strand, within SM_b20859at 1264.255 kb on + strand, within SM_b20859at 1264.256 kb on - strand, within SM_b20859at 1264.300 kb on - strand, within SM_b20859at 1264.300 kb on - strand, within SM_b20859at 1264.300 kb on - strand, within SM_b20859at 1264.350 kb on + strand, within SM_b20859at 1264.350 kb on + strand, within SM_b20859at 1264.350 kb on + strand, within SM_b20859at 1264.350 kb on + strand, within SM_b20859at 1264.350 kb on + strand, within SM_b20859at 1264.351 kb on - strand, within SM_b20859at 1264.351 kb on - strand, within SM_b20859at 1264.351 kb on - strand, within SM_b20859at 1264.396 kb on - strand, within SM_b20859at 1264.408 kb on - strand, within SM_b20859at 1264.408 kb on - strand, within SM_b20859at 1264.427 kb on + strand, within SM_b20859at 1264.427 kb on + strand, within SM_b20859at 1264.464 kb on + strand, within SM_b20859at 1264.465 kb on - strand, within SM_b20859at 1264.465 kb on - strand, within SM_b20859at 1264.465 kb on - strand, within SM_b20859at 1264.670 kb on - strand, within SM_b20859at 1264.689 kb on - strand, within SM_b20859at 1264.745 kb on - strandat 1264.746 kb on + strandat 1264.746 kb on + strandat 1264.747 kb on - strandat 1264.747 kb on - strandat 1264.832 kb on + strandat 1264.832 kb on + strandat 1265.011 kb on - strand, within SM_b21677at 1265.049 kb on + strand, within SM_b21677at 1265.093 kb on - strand, within SM_b21677at 1265.093 kb on - strand, within SM_b21677at 1265.206 kb on - strand, within SM_b21677at 1265.246 kb on + strandat 1265.246 kb on + strandat 1265.247 kb on - strandat 1265.247 kb on - strandat 1265.247 kb on - strandat 1265.247 kb on - strandat 1265.278 kb on + strandat 1265.278 kb on + strandat 1265.278 kb on + strandat 1265.279 kb on - strandat 1265.279 kb on - strandat 1265.279 kb on - strandat 1265.307 kb on - strandat 1265.490 kb on - strand, within SM_b20860at 1265.490 kb on - strand, within SM_b20860at 1265.490 kb on - strand, within SM_b20860at 1265.490 kb on - strand, within SM_b20860at 1265.623 kb on + strand, within SM_b20860at 1265.624 kb on - strand, within SM_b20860at 1265.624 kb on - strand, within SM_b20860at 1265.624 kb on - strand, within SM_b20860at 1265.691 kb on + strand, within SM_b20860at 1265.703 kb on + strand, within SM_b20860at 1265.703 kb on + strand, within SM_b20860at 1265.738 kb on + strand, within SM_b20860at 1265.765 kb on + strand, within SM_b20860at 1265.855 kb on + strand, within SM_b20860at 1265.855 kb on + strand, within SM_b20860at 1265.856 kb on - strand, within SM_b20860at 1265.863 kb on + strand, within SM_b20860at 1265.863 kb on + strand, within SM_b20860at 1265.864 kb on - strand, within SM_b20860at 1265.996 kb on - strand, within SM_b20860at 1266.017 kb on + strandat 1266.017 kb on + strandat 1266.058 kb on + strandat 1266.075 kb on + strandat 1266.075 kb on + strandat 1266.076 kb on - strandat 1266.235 kb on + strandat 1266.235 kb on + strandat 1266.235 kb on + strandat 1266.236 kb on - strandat 1266.236 kb on - strandat 1266.236 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Tagatose (C)
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1,264,008 + SM_b20859 0.14 -0.2
1,264,008 + SM_b20859 0.14 +0.0
1,264,008 + SM_b20859 0.14 +0.4
1,264,008 + SM_b20859 0.14 +0.3
1,264,009 - SM_b20859 0.14 +0.3
1,264,009 - SM_b20859 0.14 -0.4
1,264,009 - SM_b20859 0.14 -0.2
1,264,009 - SM_b20859 0.14 +0.9
1,264,112 - SM_b20859 0.25 -0.0
1,264,112 - SM_b20859 0.25 -0.5
1,264,124 + SM_b20859 0.26 -1.3
1,264,125 - SM_b20859 0.26 -0.7
1,264,125 - SM_b20859 0.26 +0.4
1,264,191 - SM_b20859 0.33 -0.7
1,264,255 + SM_b20859 0.40 -0.9
1,264,256 - SM_b20859 0.40 -1.2
1,264,300 - SM_b20859 0.44 +1.1
1,264,300 - SM_b20859 0.44 +0.3
1,264,300 - SM_b20859 0.44 +0.1
1,264,350 + SM_b20859 0.50 +0.1
1,264,350 + SM_b20859 0.50 -0.8
1,264,350 + SM_b20859 0.50 -0.2
1,264,350 + SM_b20859 0.50 +0.5
1,264,350 + SM_b20859 0.50 -0.2
1,264,351 - SM_b20859 0.50 +0.1
1,264,351 - SM_b20859 0.50 -0.3
1,264,351 - SM_b20859 0.50 -0.0
1,264,396 - SM_b20859 0.55 -0.1
1,264,408 - SM_b20859 0.56 +1.0
1,264,408 - SM_b20859 0.56 -0.1
1,264,427 + SM_b20859 0.58 -0.5
1,264,427 + SM_b20859 0.58 +0.2
1,264,464 + SM_b20859 0.62 +0.1
1,264,465 - SM_b20859 0.62 +0.0
1,264,465 - SM_b20859 0.62 +0.1
1,264,465 - SM_b20859 0.62 -0.7
1,264,670 - SM_b20859 0.83 -0.5
1,264,689 - SM_b20859 0.85 +1.2
1,264,745 - +0.5
1,264,746 + -0.3
1,264,746 + -0.5
1,264,747 - -0.1
1,264,747 - -0.6
1,264,832 + +0.5
1,264,832 + -0.1
1,265,011 - SM_b21677 0.28 -0.3
1,265,049 + SM_b21677 0.38 -0.0
1,265,093 - SM_b21677 0.50 -0.6
1,265,093 - SM_b21677 0.50 -0.5
1,265,206 - SM_b21677 0.80 -0.8
1,265,246 + -0.8
1,265,246 + +0.8
1,265,247 - +0.1
1,265,247 - -0.2
1,265,247 - -0.8
1,265,247 - -0.3
1,265,278 + +0.1
1,265,278 + -0.1
1,265,278 + +0.0
1,265,279 - +0.1
1,265,279 - -0.1
1,265,279 - +0.5
1,265,307 - +0.2
1,265,490 - SM_b20860 0.27 +0.3
1,265,490 - SM_b20860 0.27 -0.5
1,265,490 - SM_b20860 0.27 -0.2
1,265,490 - SM_b20860 0.27 -1.1
1,265,623 + SM_b20860 0.43 +0.4
1,265,624 - SM_b20860 0.43 -0.5
1,265,624 - SM_b20860 0.43 +1.5
1,265,624 - SM_b20860 0.43 +0.2
1,265,691 + SM_b20860 0.51 -0.4
1,265,703 + SM_b20860 0.52 -0.4
1,265,703 + SM_b20860 0.52 -0.1
1,265,738 + SM_b20860 0.57 -0.1
1,265,765 + SM_b20860 0.60 +0.7
1,265,855 + SM_b20860 0.71 -0.1
1,265,855 + SM_b20860 0.71 +0.2
1,265,856 - SM_b20860 0.71 -0.5
1,265,863 + SM_b20860 0.72 -0.6
1,265,863 + SM_b20860 0.72 -1.6
1,265,864 - SM_b20860 0.72 +1.0
1,265,996 - SM_b20860 0.88 +1.2
1,266,017 + +0.2
1,266,017 + -0.1
1,266,058 + -0.1
1,266,075 + +0.5
1,266,075 + +1.7
1,266,076 - -1.3
1,266,235 + +0.8
1,266,235 + +0.2
1,266,235 + +0.0
1,266,236 - -1.1
1,266,236 - +0.4
1,266,236 - +0.6

Or see this region's nucleotide sequence