Experiment: D-Tagatose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21374 and SM_b21375 are separated by 23 nucleotides SM_b21375 and SM_b21376 overlap by 4 nucleotides SM_b21376 and SM_b21377 are separated by 101 nucleotides
SM_b21374: SM_b21374 - tagatose kinase (EC 2.7.1.101) (from data) , at 1,038,999 to 1,039,940
_b21374
SM_b21375: SM_b21375 - sugar uptake ABC transporter permease, at 1,039,964 to 1,040,926
_b21375
SM_b21376: SM_b21376 - sugar uptake ABC transporter ATP-binding protein, at 1,040,923 to 1,042,434
_b21376
SM_b21377: SM_b21377 - sugar uptake ABC transporter substrate-binding protein precursor, at 1,042,536 to 1,043,426
_b21377
Position (kb)
1040
1041
1042
1043 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 1039.929 kb on + strand at 1039.930 kb on - strand at 1039.930 kb on - strand at 1040.040 kb on + strand at 1040.041 kb on - strand at 1040.047 kb on - strand at 1040.047 kb on - strand at 1040.184 kb on + strand, within SM_b21375 at 1040.521 kb on - strand, within SM_b21375 at 1040.524 kb on + strand, within SM_b21375 at 1040.524 kb on + strand, within SM_b21375 at 1040.524 kb on + strand, within SM_b21375 at 1040.525 kb on - strand, within SM_b21375 at 1040.798 kb on + strand, within SM_b21375 at 1040.874 kb on + strand at 1040.874 kb on + strand at 1041.111 kb on - strand, within SM_b21376 at 1041.361 kb on + strand, within SM_b21376 at 1041.361 kb on + strand, within SM_b21376 at 1041.378 kb on + strand, within SM_b21376 at 1041.379 kb on - strand, within SM_b21376 at 1041.379 kb on - strand, within SM_b21376 at 1041.767 kb on + strand, within SM_b21376 at 1041.768 kb on - strand, within SM_b21376 at 1041.768 kb on - strand, within SM_b21376 at 1041.835 kb on - strand, within SM_b21376 at 1042.320 kb on + strand at 1042.320 kb on + strand at 1042.321 kb on - strand at 1042.321 kb on - strand at 1042.414 kb on - strand at 1042.496 kb on + strand at 1042.537 kb on + strand at 1042.537 kb on + strand at 1042.538 kb on - strand at 1042.538 kb on - strand at 1042.538 kb on - strand at 1042.547 kb on + strand at 1042.549 kb on + strand at 1042.561 kb on - strand at 1042.964 kb on - strand, within SM_b21377 at 1043.142 kb on + strand, within SM_b21377 at 1043.308 kb on + strand, within SM_b21377 at 1043.308 kb on + strand, within SM_b21377 at 1043.308 kb on + strand, within SM_b21377 at 1043.308 kb on + strand, within SM_b21377 at 1043.309 kb on - strand, within SM_b21377 at 1043.309 kb on - strand, within SM_b21377
Per-strain Table
Position Strand Gene LocusTag Fraction D-Tagatose (C) remove 1,039,929 + -5.0 1,039,930 - -3.9 1,039,930 - -3.9 1,040,040 + -2.3 1,040,041 - -1.8 1,040,047 - -2.2 1,040,047 - -1.9 1,040,184 + SM_b21375 0.23 -5.1 1,040,521 - SM_b21375 0.58 -1.3 1,040,524 + SM_b21375 0.58 -3.6 1,040,524 + SM_b21375 0.58 -2.6 1,040,524 + SM_b21375 0.58 -2.9 1,040,525 - SM_b21375 0.58 -2.0 1,040,798 + SM_b21375 0.87 -2.2 1,040,874 + -2.4 1,040,874 + -3.7 1,041,111 - SM_b21376 0.12 -2.5 1,041,361 + SM_b21376 0.29 -2.8 1,041,361 + SM_b21376 0.29 -0.7 1,041,378 + SM_b21376 0.30 -5.0 1,041,379 - SM_b21376 0.30 -2.7 1,041,379 - SM_b21376 0.30 -1.7 1,041,767 + SM_b21376 0.56 -3.3 1,041,768 - SM_b21376 0.56 -3.5 1,041,768 - SM_b21376 0.56 -2.7 1,041,835 - SM_b21376 0.60 -3.1 1,042,320 + -3.8 1,042,320 + -2.1 1,042,321 - -4.1 1,042,321 - -1.8 1,042,414 - -1.8 1,042,496 + -2.5 1,042,537 + -4.3 1,042,537 + -4.2 1,042,538 - -2.0 1,042,538 - -0.1 1,042,538 - -2.3 1,042,547 + -3.3 1,042,549 + -2.4 1,042,561 - -2.4 1,042,964 - SM_b21377 0.48 -2.6 1,043,142 + SM_b21377 0.68 -2.2 1,043,308 + SM_b21377 0.87 -3.1 1,043,308 + SM_b21377 0.87 -4.6 1,043,308 + SM_b21377 0.87 -3.7 1,043,308 + SM_b21377 0.87 -3.1 1,043,309 - SM_b21377 0.87 -2.5 1,043,309 - SM_b21377 0.87 -4.5
Or see this region's nucleotide sequence