Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS20045 and RR42_RS20050 are separated by 66 nucleotides RR42_RS20050 and RR42_RS20055 are separated by 104 nucleotides
RR42_RS20045: RR42_RS20045 - hypothetical protein, at 4,330,393 to 4,331,025
_RS20045
RR42_RS20050: RR42_RS20050 - hypothetical protein, at 4,331,092 to 4,331,493
_RS20050
RR42_RS20055: RR42_RS20055 - ATP-dependent DNA helicase Rep, at 4,331,598 to 4,333,703
_RS20055
Position (kb) 4331
4332 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4330.094 kb on + strand at 4330.094 kb on + strand at 4330.095 kb on + strand at 4330.152 kb on + strand at 4330.152 kb on + strand at 4330.153 kb on - strand at 4330.183 kb on + strand at 4330.183 kb on + strand at 4330.183 kb on + strand at 4330.183 kb on + strand at 4330.183 kb on + strand at 4330.183 kb on + strand at 4330.184 kb on - strand at 4330.240 kb on + strand at 4330.240 kb on + strand at 4330.240 kb on + strand at 4330.240 kb on + strand at 4330.240 kb on + strand at 4330.240 kb on + strand at 4330.240 kb on + strand at 4330.241 kb on - strand at 4330.241 kb on - strand at 4330.241 kb on - strand at 4330.241 kb on - strand at 4330.243 kb on + strand at 4330.243 kb on + strand at 4330.243 kb on + strand at 4330.243 kb on + strand at 4330.244 kb on - strand at 4330.244 kb on - strand at 4330.244 kb on - strand at 4330.244 kb on - strand at 4330.244 kb on - strand at 4330.321 kb on + strand at 4330.321 kb on + strand at 4330.342 kb on + strand at 4330.342 kb on + strand at 4330.342 kb on + strand at 4330.342 kb on + strand at 4330.343 kb on - strand at 4330.343 kb on - strand at 4330.343 kb on - strand at 4330.654 kb on - strand, within RR42_RS20045 at 4330.782 kb on + strand, within RR42_RS20045 at 4330.782 kb on + strand, within RR42_RS20045 at 4330.783 kb on - strand, within RR42_RS20045 at 4330.783 kb on - strand, within RR42_RS20045 at 4331.024 kb on - strand at 4331.050 kb on - strand at 4331.088 kb on + strand at 4331.088 kb on + strand at 4331.089 kb on - strand at 4331.089 kb on - strand at 4331.089 kb on - strand at 4331.089 kb on - strand at 4331.153 kb on - strand, within RR42_RS20050 at 4331.172 kb on + strand, within RR42_RS20050 at 4331.207 kb on + strand, within RR42_RS20050 at 4331.208 kb on - strand, within RR42_RS20050 at 4331.208 kb on - strand, within RR42_RS20050 at 4331.472 kb on - strand at 4331.472 kb on - strand at 4331.498 kb on - strand at 4331.532 kb on + strand at 4331.532 kb on + strand at 4331.533 kb on - strand at 4331.533 kb on - strand at 4331.533 kb on - strand at 4331.533 kb on - strand at 4331.537 kb on + strand at 4331.537 kb on + strand at 4331.538 kb on - strand at 4331.542 kb on + strand at 4331.543 kb on - strand at 4331.543 kb on - strand at 4331.553 kb on + strand at 4331.752 kb on + strand at 4331.752 kb on + strand at 4331.753 kb on - strand at 4331.753 kb on - strand at 4331.753 kb on - strand at 4331.753 kb on - strand at 4331.753 kb on - strand at 4331.753 kb on - strand at 4331.823 kb on + strand, within RR42_RS20055 at 4331.823 kb on + strand, within RR42_RS20055 at 4331.823 kb on + strand, within RR42_RS20055 at 4331.823 kb on + strand, within RR42_RS20055 at 4331.823 kb on + strand, within RR42_RS20055 at 4331.823 kb on + strand, within RR42_RS20055 at 4331.823 kb on + strand, within RR42_RS20055 at 4331.823 kb on + strand, within RR42_RS20055 at 4331.824 kb on - strand, within RR42_RS20055 at 4331.824 kb on - strand, within RR42_RS20055 at 4331.824 kb on - strand, within RR42_RS20055 at 4331.824 kb on - strand, within RR42_RS20055 at 4331.824 kb on - strand, within RR42_RS20055 at 4331.827 kb on + strand, within RR42_RS20055 at 4331.827 kb on + strand, within RR42_RS20055 at 4331.827 kb on + strand, within RR42_RS20055 at 4331.827 kb on + strand, within RR42_RS20055 at 4331.827 kb on + strand, within RR42_RS20055 at 4331.827 kb on + strand, within RR42_RS20055 at 4331.827 kb on + strand, within RR42_RS20055 at 4331.827 kb on + strand, within RR42_RS20055 at 4331.827 kb on + strand, within RR42_RS20055 at 4331.827 kb on + strand, within RR42_RS20055 at 4331.827 kb on + strand, within RR42_RS20055 at 4331.827 kb on + strand, within RR42_RS20055 at 4331.827 kb on + strand, within RR42_RS20055 at 4331.827 kb on + strand, within RR42_RS20055 at 4331.827 kb on + strand, within RR42_RS20055 at 4331.828 kb on - strand, within RR42_RS20055 at 4331.828 kb on - strand, within RR42_RS20055 at 4331.828 kb on - strand, within RR42_RS20055 at 4331.828 kb on - strand, within RR42_RS20055 at 4331.828 kb on - strand, within RR42_RS20055 at 4331.828 kb on - strand, within RR42_RS20055 at 4331.828 kb on - strand, within RR42_RS20055 at 4331.828 kb on - strand, within RR42_RS20055 at 4331.828 kb on - strand, within RR42_RS20055 at 4331.828 kb on - strand, within RR42_RS20055 at 4331.828 kb on - strand, within RR42_RS20055 at 4331.828 kb on - strand, within RR42_RS20055 at 4331.828 kb on - strand, within RR42_RS20055 at 4331.828 kb on - strand, within RR42_RS20055 at 4331.828 kb on - strand, within RR42_RS20055 at 4331.828 kb on - strand, within RR42_RS20055 at 4332.202 kb on + strand, within RR42_RS20055 at 4332.202 kb on + strand, within RR42_RS20055 at 4332.202 kb on + strand, within RR42_RS20055 at 4332.203 kb on - strand, within RR42_RS20055 at 4332.208 kb on + strand, within RR42_RS20055 at 4332.208 kb on + strand, within RR42_RS20055 at 4332.217 kb on + strand, within RR42_RS20055 at 4332.217 kb on + strand, within RR42_RS20055 at 4332.218 kb on - strand, within RR42_RS20055
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 4,330,094 + -0.1 4,330,094 + +0.2 4,330,095 + +0.2 4,330,152 + -0.2 4,330,152 + +0.3 4,330,153 - +0.2 4,330,183 + -1.3 4,330,183 + -0.8 4,330,183 + +2.0 4,330,183 + +0.1 4,330,183 + +0.7 4,330,183 + +0.1 4,330,184 - -0.2 4,330,240 + +0.1 4,330,240 + -0.2 4,330,240 + +0.6 4,330,240 + +0.6 4,330,240 + -1.6 4,330,240 + -1.5 4,330,240 + -0.1 4,330,241 - -0.1 4,330,241 - +0.4 4,330,241 - +0.1 4,330,241 - -0.1 4,330,243 + -1.1 4,330,243 + +0.7 4,330,243 + -0.4 4,330,243 + -0.1 4,330,244 - +0.7 4,330,244 - +0.0 4,330,244 - +0.2 4,330,244 - -0.4 4,330,244 - +0.7 4,330,321 + -0.9 4,330,321 + -0.6 4,330,342 + -0.0 4,330,342 + -2.1 4,330,342 + -0.5 4,330,342 + -0.6 4,330,343 - -0.9 4,330,343 - +0.9 4,330,343 - +0.3 4,330,654 - RR42_RS20045 0.41 +0.3 4,330,782 + RR42_RS20045 0.61 -0.2 4,330,782 + RR42_RS20045 0.61 -0.0 4,330,783 - RR42_RS20045 0.62 +0.2 4,330,783 - RR42_RS20045 0.62 -0.6 4,331,024 - +0.9 4,331,050 - -0.4 4,331,088 + -0.0 4,331,088 + -1.6 4,331,089 - +0.1 4,331,089 - +0.1 4,331,089 - -2.1 4,331,089 - -1.0 4,331,153 - RR42_RS20050 0.15 -0.1 4,331,172 + RR42_RS20050 0.20 +0.2 4,331,207 + RR42_RS20050 0.29 -0.9 4,331,208 - RR42_RS20050 0.29 -0.2 4,331,208 - RR42_RS20050 0.29 -2.6 4,331,472 - +0.9 4,331,472 - -0.3 4,331,498 - -1.4 4,331,532 + +1.0 4,331,532 + -0.6 4,331,533 - -0.1 4,331,533 - -0.2 4,331,533 - +0.3 4,331,533 - +0.4 4,331,537 + -0.3 4,331,537 + +0.2 4,331,538 - +0.7 4,331,542 + -0.5 4,331,543 - -0.9 4,331,543 - -0.3 4,331,553 + +0.3 4,331,752 + -0.4 4,331,752 + -1.7 4,331,753 - -0.7 4,331,753 - +0.2 4,331,753 - +0.1 4,331,753 - -1.6 4,331,753 - -0.4 4,331,753 - -1.6 4,331,823 + RR42_RS20055 0.11 +1.4 4,331,823 + RR42_RS20055 0.11 -0.2 4,331,823 + RR42_RS20055 0.11 +0.7 4,331,823 + RR42_RS20055 0.11 -0.1 4,331,823 + RR42_RS20055 0.11 -0.3 4,331,823 + RR42_RS20055 0.11 -1.4 4,331,823 + RR42_RS20055 0.11 -0.6 4,331,823 + RR42_RS20055 0.11 -0.3 4,331,824 - RR42_RS20055 0.11 +3.0 4,331,824 - RR42_RS20055 0.11 -0.8 4,331,824 - RR42_RS20055 0.11 -1.3 4,331,824 - RR42_RS20055 0.11 -1.3 4,331,824 - RR42_RS20055 0.11 -0.5 4,331,827 + RR42_RS20055 0.11 -0.1 4,331,827 + RR42_RS20055 0.11 -0.5 4,331,827 + RR42_RS20055 0.11 -0.7 4,331,827 + RR42_RS20055 0.11 +0.7 4,331,827 + RR42_RS20055 0.11 -1.5 4,331,827 + RR42_RS20055 0.11 -0.4 4,331,827 + RR42_RS20055 0.11 +0.2 4,331,827 + RR42_RS20055 0.11 -0.5 4,331,827 + RR42_RS20055 0.11 -1.1 4,331,827 + RR42_RS20055 0.11 -1.4 4,331,827 + RR42_RS20055 0.11 -0.4 4,331,827 + RR42_RS20055 0.11 -1.0 4,331,827 + RR42_RS20055 0.11 +0.3 4,331,827 + RR42_RS20055 0.11 +0.4 4,331,827 + RR42_RS20055 0.11 +0.5 4,331,828 - RR42_RS20055 0.11 -0.3 4,331,828 - RR42_RS20055 0.11 -1.5 4,331,828 - RR42_RS20055 0.11 +1.0 4,331,828 - RR42_RS20055 0.11 +0.4 4,331,828 - RR42_RS20055 0.11 -0.4 4,331,828 - RR42_RS20055 0.11 -0.5 4,331,828 - RR42_RS20055 0.11 +0.3 4,331,828 - RR42_RS20055 0.11 -0.3 4,331,828 - RR42_RS20055 0.11 -0.7 4,331,828 - RR42_RS20055 0.11 -0.9 4,331,828 - RR42_RS20055 0.11 -1.6 4,331,828 - RR42_RS20055 0.11 +1.3 4,331,828 - RR42_RS20055 0.11 -0.3 4,331,828 - RR42_RS20055 0.11 +0.1 4,331,828 - RR42_RS20055 0.11 +0.4 4,331,828 - RR42_RS20055 0.11 +0.1 4,332,202 + RR42_RS20055 0.29 -0.8 4,332,202 + RR42_RS20055 0.29 -1.0 4,332,202 + RR42_RS20055 0.29 -0.3 4,332,203 - RR42_RS20055 0.29 -0.0 4,332,208 + RR42_RS20055 0.29 +0.1 4,332,208 + RR42_RS20055 0.29 -1.3 4,332,217 + RR42_RS20055 0.29 +0.1 4,332,217 + RR42_RS20055 0.29 +1.4 4,332,218 - RR42_RS20055 0.29 -0.3
Or see this region's nucleotide sequence