Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS02300

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS02295 and RR42_RS02300 are separated by 123 nucleotidesRR42_RS02300 and RR42_RS02305 are separated by 284 nucleotides RR42_RS02295: RR42_RS02295 - secretion protein HlyD, at 514,054 to 515,007 _RS02295 RR42_RS02300: RR42_RS02300 - hypothetical protein, at 515,131 to 515,802 _RS02300 RR42_RS02305: RR42_RS02305 - porin, at 516,087 to 517,421 _RS02305 Position (kb) 515 516Strain fitness (log2 ratio) -2 -1 0 1 2 3at 514.163 kb on + strand, within RR42_RS02295at 514.164 kb on - strand, within RR42_RS02295at 514.164 kb on - strand, within RR42_RS02295at 514.202 kb on + strand, within RR42_RS02295at 514.202 kb on + strand, within RR42_RS02295at 514.202 kb on + strand, within RR42_RS02295at 514.202 kb on + strand, within RR42_RS02295at 514.202 kb on + strand, within RR42_RS02295at 514.203 kb on - strand, within RR42_RS02295at 514.203 kb on - strand, within RR42_RS02295at 514.203 kb on - strand, within RR42_RS02295at 514.203 kb on - strand, within RR42_RS02295at 514.203 kb on - strand, within RR42_RS02295at 514.298 kb on + strand, within RR42_RS02295at 514.298 kb on + strand, within RR42_RS02295at 514.298 kb on + strand, within RR42_RS02295at 514.299 kb on - strand, within RR42_RS02295at 514.299 kb on - strand, within RR42_RS02295at 514.299 kb on - strand, within RR42_RS02295at 514.388 kb on + strand, within RR42_RS02295at 514.389 kb on - strand, within RR42_RS02295at 514.389 kb on - strand, within RR42_RS02295at 514.429 kb on + strand, within RR42_RS02295at 514.622 kb on + strand, within RR42_RS02295at 514.919 kb on + strandat 514.919 kb on + strandat 514.919 kb on + strandat 514.919 kb on + strandat 514.920 kb on - strandat 514.960 kb on + strandat 514.960 kb on + strandat 514.961 kb on - strandat 514.961 kb on - strandat 514.961 kb on - strandat 514.961 kb on - strandat 515.232 kb on + strand, within RR42_RS02300at 515.232 kb on + strand, within RR42_RS02300at 515.232 kb on + strand, within RR42_RS02300at 515.232 kb on + strand, within RR42_RS02300at 515.233 kb on - strand, within RR42_RS02300at 515.233 kb on - strand, within RR42_RS02300at 515.233 kb on - strand, within RR42_RS02300at 515.233 kb on - strand, within RR42_RS02300at 515.241 kb on + strand, within RR42_RS02300at 515.606 kb on + strand, within RR42_RS02300at 515.607 kb on - strand, within RR42_RS02300at 515.607 kb on - strand, within RR42_RS02300at 515.609 kb on + strand, within RR42_RS02300at 515.609 kb on + strand, within RR42_RS02300at 515.609 kb on + strand, within RR42_RS02300at 515.610 kb on - strand, within RR42_RS02300at 515.610 kb on - strand, within RR42_RS02300at 515.824 kb on + strandat 515.843 kb on - strandat 515.897 kb on - strandat 515.922 kb on + strandat 515.923 kb on - strandat 515.923 kb on - strandat 515.933 kb on + strandat 515.933 kb on + strandat 515.933 kb on + strandat 515.934 kb on - strandat 515.934 kb on - strandat 515.945 kb on + strandat 515.946 kb on - strandat 515.946 kb on - strandat 516.216 kb on + strandat 516.216 kb on + strandat 516.216 kb on + strandat 516.216 kb on + strandat 516.216 kb on + strandat 516.217 kb on - strandat 516.217 kb on - strandat 516.217 kb on - strandat 516.217 kb on - strandat 516.218 kb on + strandat 516.218 kb on + strandat 516.218 kb on + strandat 516.219 kb on - strandat 516.219 kb on - strandat 516.219 kb on - strandat 516.294 kb on + strand, within RR42_RS02305at 516.295 kb on - strand, within RR42_RS02305at 516.295 kb on - strand, within RR42_RS02305at 516.295 kb on - strand, within RR42_RS02305at 516.436 kb on + strand, within RR42_RS02305at 516.618 kb on + strand, within RR42_RS02305at 516.618 kb on + strand, within RR42_RS02305at 516.702 kb on + strand, within RR42_RS02305at 516.726 kb on + strand, within RR42_RS02305at 516.726 kb on + strand, within RR42_RS02305at 516.726 kb on + strand, within RR42_RS02305

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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514,163 + RR42_RS02295 0.11 -0.1
514,164 - RR42_RS02295 0.12 +0.9
514,164 - RR42_RS02295 0.12 -1.6
514,202 + RR42_RS02295 0.16 -0.4
514,202 + RR42_RS02295 0.16 -0.7
514,202 + RR42_RS02295 0.16 +0.0
514,202 + RR42_RS02295 0.16 +0.1
514,202 + RR42_RS02295 0.16 -0.9
514,203 - RR42_RS02295 0.16 +0.0
514,203 - RR42_RS02295 0.16 -0.1
514,203 - RR42_RS02295 0.16 +1.1
514,203 - RR42_RS02295 0.16 +0.8
514,203 - RR42_RS02295 0.16 -1.0
514,298 + RR42_RS02295 0.26 -0.0
514,298 + RR42_RS02295 0.26 +1.2
514,298 + RR42_RS02295 0.26 -0.8
514,299 - RR42_RS02295 0.26 -1.9
514,299 - RR42_RS02295 0.26 -1.2
514,299 - RR42_RS02295 0.26 -1.0
514,388 + RR42_RS02295 0.35 -0.4
514,389 - RR42_RS02295 0.35 -0.6
514,389 - RR42_RS02295 0.35 +0.1
514,429 + RR42_RS02295 0.39 +0.4
514,622 + RR42_RS02295 0.60 -0.1
514,919 + +0.1
514,919 + -0.1
514,919 + -0.2
514,919 + +1.0
514,920 - -0.0
514,960 + -0.3
514,960 + +0.7
514,961 - +0.6
514,961 - +2.2
514,961 - -0.2
514,961 - -0.1
515,232 + RR42_RS02300 0.15 -0.9
515,232 + RR42_RS02300 0.15 +1.9
515,232 + RR42_RS02300 0.15 +0.1
515,232 + RR42_RS02300 0.15 -1.4
515,233 - RR42_RS02300 0.15 -0.0
515,233 - RR42_RS02300 0.15 -1.1
515,233 - RR42_RS02300 0.15 -0.2
515,233 - RR42_RS02300 0.15 +0.0
515,241 + RR42_RS02300 0.16 -0.2
515,606 + RR42_RS02300 0.71 +0.0
515,607 - RR42_RS02300 0.71 -0.6
515,607 - RR42_RS02300 0.71 +0.3
515,609 + RR42_RS02300 0.71 +0.9
515,609 + RR42_RS02300 0.71 +0.6
515,609 + RR42_RS02300 0.71 +0.8
515,610 - RR42_RS02300 0.71 +1.4
515,610 - RR42_RS02300 0.71 -0.4
515,824 + +1.5
515,843 - -0.7
515,897 - +0.3
515,922 + -0.7
515,923 - +0.6
515,923 - +1.0
515,933 + -1.4
515,933 + +0.2
515,933 + +0.4
515,934 - +0.9
515,934 - -0.4
515,945 + -0.1
515,946 - -1.9
515,946 - +0.2
516,216 + -1.4
516,216 + -0.4
516,216 + -0.1
516,216 + +0.0
516,216 + -0.7
516,217 - +0.4
516,217 - -0.3
516,217 - -0.3
516,217 - +0.2
516,218 + +0.4
516,218 + -0.6
516,218 + +1.0
516,219 - -1.4
516,219 - +1.2
516,219 - +3.2
516,294 + RR42_RS02305 0.16 +0.6
516,295 - RR42_RS02305 0.16 -1.0
516,295 - RR42_RS02305 0.16 -0.4
516,295 - RR42_RS02305 0.16 -0.6
516,436 + RR42_RS02305 0.26 -0.1
516,618 + RR42_RS02305 0.40 +0.4
516,618 + RR42_RS02305 0.40 +0.6
516,702 + RR42_RS02305 0.46 +0.4
516,726 + RR42_RS02305 0.48 -0.4
516,726 + RR42_RS02305 0.48 +0.4
516,726 + RR42_RS02305 0.48 -0.7

Or see this region's nucleotide sequence