Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS00495 and RR42_RS00500 are separated by 1 nucleotides RR42_RS00500 and RR42_RS00505 are separated by 227 nucleotides RR42_RS00505 and RR42_RS00510 overlap by 34 nucleotides RR42_RS00510 and RR42_RS00515 are separated by 229 nucleotides
RR42_RS00495: RR42_RS00495 - histidine kinase, at 128,132 to 131,065
_RS00495
RR42_RS00500: RR42_RS00500 - transcriptional regulator, at 131,067 to 131,762
_RS00500
RR42_RS00505: RR42_RS00505 - histidine kinase, at 131,990 to 134,026
_RS00505
RR42_RS00510: RR42_RS00510 - transcriptional regulator, at 133,993 to 134,652
_RS00510
RR42_RS00515: RR42_RS00515 - phosphonate monoester hydrolase, at 134,882 to 136,441
_RS00515
Position (kb) 131
132
133
134
135 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 131.286 kb on - strand, within RR42_RS00500 at 131.315 kb on - strand, within RR42_RS00500 at 131.373 kb on + strand, within RR42_RS00500 at 131.655 kb on + strand, within RR42_RS00500 at 131.655 kb on + strand, within RR42_RS00500 at 131.659 kb on + strand, within RR42_RS00500 at 131.660 kb on - strand, within RR42_RS00500 at 131.667 kb on + strand, within RR42_RS00500 at 131.667 kb on + strand, within RR42_RS00500 at 131.667 kb on + strand, within RR42_RS00500 at 131.668 kb on - strand, within RR42_RS00500 at 131.668 kb on - strand, within RR42_RS00500 at 131.668 kb on - strand, within RR42_RS00500 at 131.668 kb on - strand, within RR42_RS00500 at 131.948 kb on + strand at 131.950 kb on + strand at 131.950 kb on + strand at 131.950 kb on + strand at 131.951 kb on - strand at 131.951 kb on - strand at 132.230 kb on - strand, within RR42_RS00505 at 132.440 kb on + strand, within RR42_RS00505 at 132.441 kb on - strand, within RR42_RS00505 at 132.441 kb on - strand, within RR42_RS00505 at 132.548 kb on + strand, within RR42_RS00505 at 132.548 kb on + strand, within RR42_RS00505 at 132.548 kb on + strand, within RR42_RS00505 at 132.574 kb on + strand, within RR42_RS00505 at 132.574 kb on + strand, within RR42_RS00505 at 132.605 kb on - strand, within RR42_RS00505 at 132.680 kb on + strand, within RR42_RS00505 at 132.680 kb on + strand, within RR42_RS00505 at 132.681 kb on - strand, within RR42_RS00505 at 132.681 kb on - strand, within RR42_RS00505 at 132.681 kb on - strand, within RR42_RS00505 at 132.686 kb on + strand, within RR42_RS00505 at 132.779 kb on + strand, within RR42_RS00505 at 132.779 kb on + strand, within RR42_RS00505 at 132.780 kb on - strand, within RR42_RS00505 at 132.936 kb on + strand, within RR42_RS00505 at 132.937 kb on - strand, within RR42_RS00505 at 132.937 kb on - strand, within RR42_RS00505 at 132.937 kb on - strand, within RR42_RS00505 at 133.091 kb on + strand, within RR42_RS00505 at 133.092 kb on - strand, within RR42_RS00505 at 133.146 kb on - strand, within RR42_RS00505 at 133.703 kb on + strand, within RR42_RS00505 at 133.703 kb on + strand, within RR42_RS00505 at 133.703 kb on + strand, within RR42_RS00505 at 133.703 kb on + strand, within RR42_RS00505 at 133.704 kb on - strand, within RR42_RS00505 at 133.704 kb on - strand, within RR42_RS00505 at 133.927 kb on + strand at 133.928 kb on - strand at 134.022 kb on + strand at 134.022 kb on + strand at 134.022 kb on + strand at 134.022 kb on + strand at 134.022 kb on + strand at 134.022 kb on + strand at 134.022 kb on + strand at 134.023 kb on - strand at 134.023 kb on - strand at 134.024 kb on + strand at 134.025 kb on - strand at 134.025 kb on - strand at 134.025 kb on - strand at 134.127 kb on - strand, within RR42_RS00510 at 134.363 kb on + strand, within RR42_RS00510 at 134.363 kb on + strand, within RR42_RS00510 at 134.392 kb on + strand, within RR42_RS00510 at 134.393 kb on - strand, within RR42_RS00510 at 134.602 kb on + strand at 134.602 kb on + strand at 134.759 kb on + strand at 134.771 kb on + strand at 134.772 kb on - strand at 134.796 kb on - strand at 134.799 kb on - strand at 134.916 kb on + strand at 134.917 kb on - strand at 134.917 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 131,286 - RR42_RS00500 0.31 -0.7 131,315 - RR42_RS00500 0.36 +0.8 131,373 + RR42_RS00500 0.44 +0.7 131,655 + RR42_RS00500 0.84 -0.4 131,655 + RR42_RS00500 0.84 +0.5 131,659 + RR42_RS00500 0.85 -0.2 131,660 - RR42_RS00500 0.85 -1.2 131,667 + RR42_RS00500 0.86 +0.9 131,667 + RR42_RS00500 0.86 -0.3 131,667 + RR42_RS00500 0.86 +0.4 131,668 - RR42_RS00500 0.86 -0.9 131,668 - RR42_RS00500 0.86 +0.8 131,668 - RR42_RS00500 0.86 -0.4 131,668 - RR42_RS00500 0.86 -0.7 131,948 + +1.5 131,950 + +0.9 131,950 + -0.3 131,950 + -1.0 131,951 - -3.0 131,951 - -0.3 132,230 - RR42_RS00505 0.12 +0.1 132,440 + RR42_RS00505 0.22 +1.0 132,441 - RR42_RS00505 0.22 -1.8 132,441 - RR42_RS00505 0.22 +0.3 132,548 + RR42_RS00505 0.27 +0.3 132,548 + RR42_RS00505 0.27 -1.2 132,548 + RR42_RS00505 0.27 -0.8 132,574 + RR42_RS00505 0.29 -2.1 132,574 + RR42_RS00505 0.29 +0.3 132,605 - RR42_RS00505 0.30 -0.1 132,680 + RR42_RS00505 0.34 +0.7 132,680 + RR42_RS00505 0.34 -1.5 132,681 - RR42_RS00505 0.34 -1.1 132,681 - RR42_RS00505 0.34 -0.0 132,681 - RR42_RS00505 0.34 -1.1 132,686 + RR42_RS00505 0.34 -0.2 132,779 + RR42_RS00505 0.39 -0.3 132,779 + RR42_RS00505 0.39 +0.8 132,780 - RR42_RS00505 0.39 -0.9 132,936 + RR42_RS00505 0.46 -0.7 132,937 - RR42_RS00505 0.46 -0.2 132,937 - RR42_RS00505 0.46 +0.4 132,937 - RR42_RS00505 0.46 +0.3 133,091 + RR42_RS00505 0.54 -0.6 133,092 - RR42_RS00505 0.54 +0.2 133,146 - RR42_RS00505 0.57 -0.5 133,703 + RR42_RS00505 0.84 +1.0 133,703 + RR42_RS00505 0.84 -0.5 133,703 + RR42_RS00505 0.84 +0.4 133,703 + RR42_RS00505 0.84 -1.0 133,704 - RR42_RS00505 0.84 +0.5 133,704 - RR42_RS00505 0.84 -0.3 133,927 + +0.6 133,928 - +0.5 134,022 + +0.9 134,022 + +1.0 134,022 + -0.9 134,022 + -0.5 134,022 + +0.5 134,022 + +0.1 134,022 + -1.3 134,023 - -0.0 134,023 - +0.0 134,024 + -0.4 134,025 - -0.5 134,025 - -0.2 134,025 - -0.5 134,127 - RR42_RS00510 0.20 +0.0 134,363 + RR42_RS00510 0.56 -0.9 134,363 + RR42_RS00510 0.56 -0.9 134,392 + RR42_RS00510 0.60 -0.7 134,393 - RR42_RS00510 0.61 +0.8 134,602 + -1.7 134,602 + -0.2 134,759 + -0.5 134,771 + +1.0 134,772 - -0.3 134,796 - -0.4 134,799 - -1.4 134,916 + -0.2 134,917 - -1.8 134,917 - -0.4
Or see this region's nucleotide sequence