Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS00495 and RR42_RS00500 are separated by 1 nucleotides RR42_RS00500 and RR42_RS00505 are separated by 227 nucleotides
RR42_RS00495: RR42_RS00495 - histidine kinase, at 128,132 to 131,065
_RS00495
RR42_RS00500: RR42_RS00500 - transcriptional regulator, at 131,067 to 131,762
_RS00500
RR42_RS00505: RR42_RS00505 - histidine kinase, at 131,990 to 134,026
_RS00505
Position (kb) 131
132 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 130.088 kb on + strand, within RR42_RS00495 at 130.089 kb on - strand, within RR42_RS00495 at 130.233 kb on - strand, within RR42_RS00495 at 130.591 kb on - strand, within RR42_RS00495 at 130.670 kb on + strand, within RR42_RS00495 at 130.671 kb on - strand, within RR42_RS00495 at 130.671 kb on - strand, within RR42_RS00495 at 131.286 kb on - strand, within RR42_RS00500 at 131.315 kb on - strand, within RR42_RS00500 at 131.373 kb on + strand, within RR42_RS00500 at 131.655 kb on + strand, within RR42_RS00500 at 131.655 kb on + strand, within RR42_RS00500 at 131.659 kb on + strand, within RR42_RS00500 at 131.660 kb on - strand, within RR42_RS00500 at 131.667 kb on + strand, within RR42_RS00500 at 131.667 kb on + strand, within RR42_RS00500 at 131.667 kb on + strand, within RR42_RS00500 at 131.668 kb on - strand, within RR42_RS00500 at 131.668 kb on - strand, within RR42_RS00500 at 131.668 kb on - strand, within RR42_RS00500 at 131.668 kb on - strand, within RR42_RS00500 at 131.948 kb on + strand at 131.950 kb on + strand at 131.950 kb on + strand at 131.950 kb on + strand at 131.951 kb on - strand at 131.951 kb on - strand at 132.230 kb on - strand, within RR42_RS00505 at 132.440 kb on + strand, within RR42_RS00505 at 132.441 kb on - strand, within RR42_RS00505 at 132.441 kb on - strand, within RR42_RS00505 at 132.548 kb on + strand, within RR42_RS00505 at 132.548 kb on + strand, within RR42_RS00505 at 132.548 kb on + strand, within RR42_RS00505 at 132.574 kb on + strand, within RR42_RS00505 at 132.574 kb on + strand, within RR42_RS00505 at 132.605 kb on - strand, within RR42_RS00505 at 132.680 kb on + strand, within RR42_RS00505 at 132.680 kb on + strand, within RR42_RS00505 at 132.681 kb on - strand, within RR42_RS00505 at 132.681 kb on - strand, within RR42_RS00505 at 132.681 kb on - strand, within RR42_RS00505 at 132.686 kb on + strand, within RR42_RS00505
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 130,088 + RR42_RS00495 0.67 +0.5 130,089 - RR42_RS00495 0.67 +0.5 130,233 - RR42_RS00495 0.72 +0.4 130,591 - RR42_RS00495 0.84 -0.3 130,670 + RR42_RS00495 0.87 +0.1 130,671 - RR42_RS00495 0.87 +0.6 130,671 - RR42_RS00495 0.87 +0.0 131,286 - RR42_RS00500 0.31 -0.7 131,315 - RR42_RS00500 0.36 +0.8 131,373 + RR42_RS00500 0.44 +0.7 131,655 + RR42_RS00500 0.84 -0.4 131,655 + RR42_RS00500 0.84 +0.5 131,659 + RR42_RS00500 0.85 -0.2 131,660 - RR42_RS00500 0.85 -1.2 131,667 + RR42_RS00500 0.86 +0.9 131,667 + RR42_RS00500 0.86 -0.3 131,667 + RR42_RS00500 0.86 +0.4 131,668 - RR42_RS00500 0.86 -0.9 131,668 - RR42_RS00500 0.86 +0.8 131,668 - RR42_RS00500 0.86 -0.4 131,668 - RR42_RS00500 0.86 -0.7 131,948 + +1.5 131,950 + +0.9 131,950 + -0.3 131,950 + -1.0 131,951 - -3.0 131,951 - -0.3 132,230 - RR42_RS00505 0.12 +0.1 132,440 + RR42_RS00505 0.22 +1.0 132,441 - RR42_RS00505 0.22 -1.8 132,441 - RR42_RS00505 0.22 +0.3 132,548 + RR42_RS00505 0.27 +0.3 132,548 + RR42_RS00505 0.27 -1.2 132,548 + RR42_RS00505 0.27 -0.8 132,574 + RR42_RS00505 0.29 -2.1 132,574 + RR42_RS00505 0.29 +0.3 132,605 - RR42_RS00505 0.30 -0.1 132,680 + RR42_RS00505 0.34 +0.7 132,680 + RR42_RS00505 0.34 -1.5 132,681 - RR42_RS00505 0.34 -1.1 132,681 - RR42_RS00505 0.34 -0.0 132,681 - RR42_RS00505 0.34 -1.1 132,686 + RR42_RS00505 0.34 -0.2
Or see this region's nucleotide sequence