Experiment: Cobalt chloride 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_555 and Pf6N2E2_556 are separated by 83 nucleotides Pf6N2E2_556 and Pf6N2E2_557 are separated by 24 nucleotides Pf6N2E2_557 and Pf6N2E2_558 are separated by 63 nucleotides Pf6N2E2_558 and Pf6N2E2_559 are separated by 18 nucleotides Pf6N2E2_559 and Pf6N2E2_560 overlap by 4 nucleotides
Pf6N2E2_555 - Uncharacterized protein ImpB, at 627,315 to 627,875
_555
Pf6N2E2_556 - hypothetical protein, at 627,959 to 628,075
_556
Pf6N2E2_557 - Uncharacterized protein homologous to Paeru. PA2364, at 628,100 to 628,549
_557
Pf6N2E2_558 - Uncharacterized protein ImpJ/VasE, at 628,613 to 629,944
_558
Pf6N2E2_559 - Inner membrane protein DotU, at 629,963 to 630,727
_559
Pf6N2E2_560 - IcmF-related protein, at 630,724 to 634,548
_560
Position (kb) 628
629
630 Strain fitness (log2 ratio) -2
-1
0
1
2 at 627.814 kb on + strand, within Pf6N2E2_555 at 627.814 kb on + strand at 627.814 kb on + strand, within Pf6N2E2_555 at 627.814 kb on + strand, within Pf6N2E2_555 at 627.815 kb on - strand, within Pf6N2E2_555 at 627.815 kb on - strand, within Pf6N2E2_555 at 627.864 kb on - strand at 628.023 kb on + strand, within Pf6N2E2_556 at 628.036 kb on - strand, within Pf6N2E2_556 at 628.445 kb on + strand, within Pf6N2E2_557 at 628.445 kb on + strand, within Pf6N2E2_557 at 628.445 kb on + strand, within Pf6N2E2_557 at 628.445 kb on + strand, within Pf6N2E2_557 at 628.445 kb on + strand, within Pf6N2E2_557 at 628.445 kb on + strand, within Pf6N2E2_557 at 628.445 kb on + strand, within Pf6N2E2_557 at 628.445 kb on + strand, within Pf6N2E2_557 at 628.446 kb on - strand, within Pf6N2E2_557 at 628.446 kb on - strand, within Pf6N2E2_557 at 628.446 kb on - strand, within Pf6N2E2_557 at 628.446 kb on - strand, within Pf6N2E2_557 at 628.448 kb on - strand, within Pf6N2E2_557 at 628.448 kb on - strand, within Pf6N2E2_557 at 628.448 kb on - strand, within Pf6N2E2_557 at 628.612 kb on + strand at 628.613 kb on - strand at 628.925 kb on + strand, within Pf6N2E2_558 at 628.925 kb on + strand, within Pf6N2E2_558 at 628.925 kb on + strand, within Pf6N2E2_558 at 628.926 kb on - strand, within Pf6N2E2_558 at 629.156 kb on + strand, within Pf6N2E2_558 at 629.393 kb on + strand, within Pf6N2E2_558 at 629.394 kb on - strand, within Pf6N2E2_558 at 629.786 kb on + strand, within Pf6N2E2_558 at 629.786 kb on + strand, within Pf6N2E2_558 at 629.787 kb on - strand, within Pf6N2E2_558 at 629.962 kb on + strand at 629.962 kb on + strand at 629.962 kb on + strand at 629.962 kb on + strand at 629.962 kb on + strand at 629.962 kb on + strand at 629.962 kb on + strand at 629.962 kb on + strand at 629.963 kb on - strand at 630.090 kb on + strand, within Pf6N2E2_559 at 630.201 kb on - strand, within Pf6N2E2_559 at 630.201 kb on - strand, within Pf6N2E2_559 at 630.293 kb on + strand, within Pf6N2E2_559 at 630.293 kb on + strand, within Pf6N2E2_559 at 630.293 kb on + strand, within Pf6N2E2_559 at 630.293 kb on + strand, within Pf6N2E2_559 at 630.293 kb on + strand, within Pf6N2E2_559 at 630.294 kb on - strand, within Pf6N2E2_559 at 630.294 kb on - strand, within Pf6N2E2_559 at 630.294 kb on - strand, within Pf6N2E2_559 at 630.294 kb on - strand, within Pf6N2E2_559 at 630.294 kb on - strand, within Pf6N2E2_559 at 630.294 kb on - strand, within Pf6N2E2_559 at 630.294 kb on - strand, within Pf6N2E2_559 at 630.294 kb on - strand, within Pf6N2E2_559 at 630.343 kb on - strand, within Pf6N2E2_559 at 630.387 kb on - strand, within Pf6N2E2_559 at 630.503 kb on + strand, within Pf6N2E2_559 at 630.503 kb on + strand, within Pf6N2E2_559 at 630.503 kb on + strand, within Pf6N2E2_559 at 630.839 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.16 mM remove 627,814 + Pf6N2E2_555 0.89 -0.4 627,814 + +0.4 627,814 + Pf6N2E2_555 0.89 -2.2 627,814 + Pf6N2E2_555 0.89 -1.2 627,815 - Pf6N2E2_555 0.89 +2.2 627,815 - Pf6N2E2_555 0.89 -0.4 627,864 - +0.8 628,023 + Pf6N2E2_556 0.55 -1.3 628,036 - Pf6N2E2_556 0.66 -1.2 628,445 + Pf6N2E2_557 0.77 -1.4 628,445 + Pf6N2E2_557 0.77 -0.7 628,445 + Pf6N2E2_557 0.77 -1.4 628,445 + Pf6N2E2_557 0.77 -0.7 628,445 + Pf6N2E2_557 0.77 -1.2 628,445 + Pf6N2E2_557 0.77 -1.0 628,445 + Pf6N2E2_557 0.77 +0.2 628,445 + Pf6N2E2_557 0.77 +0.2 628,446 - Pf6N2E2_557 0.77 +0.2 628,446 - Pf6N2E2_557 0.77 +1.4 628,446 - Pf6N2E2_557 0.77 -2.3 628,446 - Pf6N2E2_557 0.77 -0.2 628,448 - Pf6N2E2_557 0.77 +0.5 628,448 - Pf6N2E2_557 0.77 +0.2 628,448 - Pf6N2E2_557 0.77 +1.2 628,612 + -0.6 628,613 - +1.7 628,925 + Pf6N2E2_558 0.23 -2.1 628,925 + Pf6N2E2_558 0.23 -0.6 628,925 + Pf6N2E2_558 0.23 -1.2 628,926 - Pf6N2E2_558 0.23 +0.7 629,156 + Pf6N2E2_558 0.41 +0.2 629,393 + Pf6N2E2_558 0.59 +0.2 629,394 - Pf6N2E2_558 0.59 -0.4 629,786 + Pf6N2E2_558 0.88 -2.1 629,786 + Pf6N2E2_558 0.88 -0.4 629,787 - Pf6N2E2_558 0.88 -0.4 629,962 + -0.1 629,962 + -1.7 629,962 + -0.8 629,962 + +0.0 629,962 + -0.4 629,962 + -0.7 629,962 + +0.3 629,962 + +1.3 629,963 - +0.4 630,090 + Pf6N2E2_559 0.17 -0.8 630,201 - Pf6N2E2_559 0.31 +1.2 630,201 - Pf6N2E2_559 0.31 +0.5 630,293 + Pf6N2E2_559 0.43 -1.1 630,293 + Pf6N2E2_559 0.43 +0.7 630,293 + Pf6N2E2_559 0.43 -0.2 630,293 + Pf6N2E2_559 0.43 -1.1 630,293 + Pf6N2E2_559 0.43 -1.1 630,294 - Pf6N2E2_559 0.43 +0.5 630,294 - Pf6N2E2_559 0.43 -2.3 630,294 - Pf6N2E2_559 0.43 -0.1 630,294 - Pf6N2E2_559 0.43 -0.0 630,294 - Pf6N2E2_559 0.43 -0.3 630,294 - Pf6N2E2_559 0.43 +0.3 630,294 - Pf6N2E2_559 0.43 -0.3 630,294 - Pf6N2E2_559 0.43 -0.0 630,343 - Pf6N2E2_559 0.50 +1.0 630,387 - Pf6N2E2_559 0.55 +0.3 630,503 + Pf6N2E2_559 0.71 -0.9 630,503 + Pf6N2E2_559 0.71 -1.6 630,503 + Pf6N2E2_559 0.71 +0.3 630,839 - -0.5
Or see this region's nucleotide sequence