Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3081

Experiment: Cobalt chloride 0.16 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_3079 and Pf6N2E2_3080 overlap by 4 nucleotidesPf6N2E2_3080 and Pf6N2E2_3081 are separated by 126 nucleotidesPf6N2E2_3081 and Pf6N2E2_3082 are separated by 44 nucleotidesPf6N2E2_3082 and Pf6N2E2_3083 overlap by 12 nucleotides Pf6N2E2_3079 - Cysteine desulfurase CsdA-CsdE (EC 2.8.1.7), main protein CsdA, at 3,567,412 to 3,568,617 _3079 Pf6N2E2_3080 - Cysteine desulfurase CsdA-CsdE, sulfur acceptor protein CsdE, at 3,568,614 to 3,569,021 _3080 Pf6N2E2_3081 - HesA/MoeB/ThiF family protein related to EC-YgdL, at 3,569,148 to 3,569,966 _3081 Pf6N2E2_3082 - hypothetical protein, at 3,570,011 to 3,570,190 _3082 Pf6N2E2_3083 - N-succinyl-L,L-diaminopimelate desuccinylase (EC 3.5.1.18), at 3,570,179 to 3,571,330 _3083 Position (kb) 3569 3570Strain fitness (log2 ratio) -2 -1 0 1 2at 3568.277 kb on - strand, within Pf6N2E2_3079at 3568.277 kb on - strand, within Pf6N2E2_3079at 3568.333 kb on + strand, within Pf6N2E2_3079at 3568.333 kb on + strand, within Pf6N2E2_3079at 3568.333 kb on + strand, within Pf6N2E2_3079at 3568.334 kb on - strand, within Pf6N2E2_3079at 3568.549 kb on + strandat 3568.549 kb on + strandat 3568.549 kb on + strandat 3568.549 kb on + strandat 3568.968 kb on - strand, within Pf6N2E2_3080at 3569.201 kb on + strandat 3569.380 kb on + strand, within Pf6N2E2_3081at 3569.380 kb on + strand, within Pf6N2E2_3081at 3569.381 kb on - strand, within Pf6N2E2_3081at 3569.381 kb on - strand, within Pf6N2E2_3081at 3569.433 kb on + strand, within Pf6N2E2_3081at 3569.433 kb on + strand, within Pf6N2E2_3081at 3569.433 kb on + strand, within Pf6N2E2_3081at 3569.434 kb on - strand, within Pf6N2E2_3081at 3569.434 kb on - strand, within Pf6N2E2_3081at 3569.626 kb on + strand, within Pf6N2E2_3081at 3569.626 kb on + strand, within Pf6N2E2_3081at 3569.626 kb on + strand, within Pf6N2E2_3081at 3569.627 kb on - strand, within Pf6N2E2_3081at 3569.627 kb on - strand, within Pf6N2E2_3081at 3569.918 kb on - strandat 3569.955 kb on - strandat 3569.989 kb on + strandat 3569.989 kb on + strandat 3569.990 kb on - strandat 3569.990 kb on - strandat 3569.990 kb on - strandat 3569.991 kb on + strandat 3569.992 kb on - strandat 3569.992 kb on - strandat 3569.992 kb on - strandat 3569.992 kb on - strandat 3570.100 kb on + strand, within Pf6N2E2_3082at 3570.101 kb on - strand, within Pf6N2E2_3082at 3570.102 kb on + strand, within Pf6N2E2_3082at 3570.102 kb on + strand, within Pf6N2E2_3082at 3570.103 kb on - strand, within Pf6N2E2_3082at 3570.107 kb on + strand, within Pf6N2E2_3082at 3570.107 kb on + strand, within Pf6N2E2_3082at 3570.107 kb on + strand, within Pf6N2E2_3082at 3570.107 kb on + strand, within Pf6N2E2_3082at 3570.141 kb on + strand, within Pf6N2E2_3082at 3570.161 kb on + strand, within Pf6N2E2_3082at 3570.161 kb on + strand, within Pf6N2E2_3082

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.16 mM
remove
3,568,277 - Pf6N2E2_3079 0.72 -1.0
3,568,277 - Pf6N2E2_3079 0.72 -1.7
3,568,333 + Pf6N2E2_3079 0.76 -0.1
3,568,333 + Pf6N2E2_3079 0.76 +1.0
3,568,333 + Pf6N2E2_3079 0.76 -1.5
3,568,334 - Pf6N2E2_3079 0.76 -1.6
3,568,549 + -0.9
3,568,549 + -0.8
3,568,549 + -0.9
3,568,549 + +0.0
3,568,968 - Pf6N2E2_3080 0.87 -1.0
3,569,201 + -0.2
3,569,380 + Pf6N2E2_3081 0.28 -0.7
3,569,380 + Pf6N2E2_3081 0.28 -1.1
3,569,381 - Pf6N2E2_3081 0.28 -0.2
3,569,381 - Pf6N2E2_3081 0.28 -0.7
3,569,433 + Pf6N2E2_3081 0.35 +0.0
3,569,433 + Pf6N2E2_3081 0.35 -0.7
3,569,433 + Pf6N2E2_3081 0.35 +2.3
3,569,434 - Pf6N2E2_3081 0.35 -0.6
3,569,434 - Pf6N2E2_3081 0.35 +0.1
3,569,626 + Pf6N2E2_3081 0.58 -1.0
3,569,626 + Pf6N2E2_3081 0.58 -1.8
3,569,626 + Pf6N2E2_3081 0.58 -0.1
3,569,627 - Pf6N2E2_3081 0.58 -0.5
3,569,627 - Pf6N2E2_3081 0.58 -0.1
3,569,918 - -0.9
3,569,955 - -0.3
3,569,989 + +0.1
3,569,989 + -1.3
3,569,990 - +0.7
3,569,990 - -0.1
3,569,990 - -0.1
3,569,991 + +0.5
3,569,992 - -0.3
3,569,992 - -0.6
3,569,992 - -0.3
3,569,992 - +0.2
3,570,100 + Pf6N2E2_3082 0.49 +0.8
3,570,101 - Pf6N2E2_3082 0.50 -0.5
3,570,102 + Pf6N2E2_3082 0.51 -0.1
3,570,102 + Pf6N2E2_3082 0.51 -0.6
3,570,103 - Pf6N2E2_3082 0.51 -1.2
3,570,107 + Pf6N2E2_3082 0.53 -0.9
3,570,107 + Pf6N2E2_3082 0.53 -0.0
3,570,107 + Pf6N2E2_3082 0.53 +0.5
3,570,107 + Pf6N2E2_3082 0.53 -0.3
3,570,141 + Pf6N2E2_3082 0.72 -0.4
3,570,161 + Pf6N2E2_3082 0.83 -0.1
3,570,161 + Pf6N2E2_3082 0.83 -1.4

Or see this region's nucleotide sequence