Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2544

Experiment: Cobalt chloride 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2543 and Pf6N2E2_2544 are separated by 79 nucleotidesPf6N2E2_2544 and Pf6N2E2_2545 are separated by 181 nucleotidesPf6N2E2_2545 and Pf6N2E2_2546 overlap by 12 nucleotidesPf6N2E2_2546 and Pf6N2E2_2547 are separated by 151 nucleotides Pf6N2E2_2543 - Cyanophycin synthase (EC 6.3.2.29)(EC 6.3.2.30), at 3,004,342 to 3,006,087 _2543 Pf6N2E2_2544 - Deblocking aminopeptidase (EC 3.4.11.-) @ Cyanophycinase 2 (EC 3.4.15.6), at 3,006,167 to 3,007,357 _2544 Pf6N2E2_2545 - FIG00953242: hypothetical protein, at 3,007,539 to 3,007,766 _2545 Pf6N2E2_2546 - Carbon storage regulator, at 3,007,755 to 3,007,955 _2546 Pf6N2E2_2547 - Protein of unknown function UPF0060, at 3,008,107 to 3,008,484 _2547 Position (kb) 3006 3007 3008Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3005.213 kb on + strand, within Pf6N2E2_2543at 3005.214 kb on - strand, within Pf6N2E2_2543at 3005.214 kb on - strand, within Pf6N2E2_2543at 3005.214 kb on - strand, within Pf6N2E2_2543at 3005.214 kb on - strand, within Pf6N2E2_2543at 3005.219 kb on + strand, within Pf6N2E2_2543at 3005.220 kb on - strand, within Pf6N2E2_2543at 3005.727 kb on + strand, within Pf6N2E2_2543at 3005.727 kb on + strand, within Pf6N2E2_2543at 3005.782 kb on + strand, within Pf6N2E2_2543at 3005.977 kb on + strandat 3005.978 kb on - strandat 3006.086 kb on - strandat 3006.145 kb on + strandat 3006.145 kb on + strandat 3006.145 kb on + strandat 3006.145 kb on + strandat 3006.145 kb on + strandat 3006.145 kb on + strandat 3006.146 kb on - strandat 3006.146 kb on - strandat 3006.146 kb on - strandat 3006.146 kb on - strandat 3006.146 kb on - strandat 3006.146 kb on - strandat 3006.146 kb on - strandat 3006.201 kb on - strandat 3006.201 kb on - strandat 3006.272 kb on + strandat 3006.272 kb on + strandat 3006.273 kb on - strandat 3006.623 kb on + strand, within Pf6N2E2_2544at 3006.674 kb on + strand, within Pf6N2E2_2544at 3006.674 kb on + strand, within Pf6N2E2_2544at 3006.675 kb on - strand, within Pf6N2E2_2544at 3006.675 kb on - strand, within Pf6N2E2_2544at 3006.675 kb on - strand, within Pf6N2E2_2544at 3006.830 kb on - strand, within Pf6N2E2_2544at 3006.981 kb on - strand, within Pf6N2E2_2544at 3007.058 kb on + strand, within Pf6N2E2_2544at 3007.059 kb on - strand, within Pf6N2E2_2544at 3007.061 kb on + strand, within Pf6N2E2_2544at 3007.062 kb on - strand, within Pf6N2E2_2544at 3007.062 kb on - strand, within Pf6N2E2_2544at 3007.202 kb on + strand, within Pf6N2E2_2544at 3007.202 kb on + strand, within Pf6N2E2_2544at 3007.202 kb on + strand, within Pf6N2E2_2544at 3007.203 kb on - strand, within Pf6N2E2_2544at 3007.203 kb on - strand, within Pf6N2E2_2544at 3007.203 kb on - strand, within Pf6N2E2_2544at 3007.203 kb on - strand, within Pf6N2E2_2544at 3007.517 kb on + strandat 3007.518 kb on - strandat 3007.518 kb on - strandat 3007.518 kb on - strandat 3007.518 kb on - strandat 3007.756 kb on + strandat 3007.757 kb on - strandat 3007.813 kb on + strand, within Pf6N2E2_2546at 3007.813 kb on + strand, within Pf6N2E2_2546at 3007.813 kb on + strand, within Pf6N2E2_2546at 3007.904 kb on + strand, within Pf6N2E2_2546at 3007.904 kb on + strand, within Pf6N2E2_2546at 3007.932 kb on + strand, within Pf6N2E2_2546at 3007.932 kb on + strand, within Pf6N2E2_2546at 3007.947 kb on + strandat 3007.947 kb on + strandat 3007.947 kb on + strandat 3007.947 kb on + strandat 3007.947 kb on + strandat 3007.948 kb on - strandat 3007.948 kb on - strandat 3007.948 kb on - strandat 3008.044 kb on - strandat 3008.044 kb on - strandat 3008.104 kb on - strandat 3008.104 kb on - strandat 3008.238 kb on + strand, within Pf6N2E2_2547at 3008.238 kb on + strand, within Pf6N2E2_2547at 3008.238 kb on + strand, within Pf6N2E2_2547at 3008.238 kb on + strand, within Pf6N2E2_2547at 3008.238 kb on + strand, within Pf6N2E2_2547at 3008.238 kb on + strand, within Pf6N2E2_2547at 3008.239 kb on - strand, within Pf6N2E2_2547at 3008.239 kb on - strand, within Pf6N2E2_2547at 3008.240 kb on + strand, within Pf6N2E2_2547at 3008.240 kb on + strand, within Pf6N2E2_2547at 3008.240 kb on + strand, within Pf6N2E2_2547at 3008.240 kb on + strand, within Pf6N2E2_2547at 3008.240 kb on + strand, within Pf6N2E2_2547at 3008.240 kb on + strand, within Pf6N2E2_2547at 3008.240 kb on + strand, within Pf6N2E2_2547at 3008.240 kb on + strand, within Pf6N2E2_2547at 3008.240 kb on + strand, within Pf6N2E2_2547at 3008.240 kb on + strand, within Pf6N2E2_2547at 3008.241 kb on - strand, within Pf6N2E2_2547at 3008.241 kb on - strand, within Pf6N2E2_2547at 3008.241 kb on - strand, within Pf6N2E2_2547at 3008.241 kb on - strand, within Pf6N2E2_2547at 3008.253 kb on - strand, within Pf6N2E2_2547at 3008.261 kb on + strand, within Pf6N2E2_2547at 3008.276 kb on + strand, within Pf6N2E2_2547at 3008.276 kb on + strand, within Pf6N2E2_2547at 3008.277 kb on - strand, within Pf6N2E2_2547

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.16 mM
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3,005,213 + Pf6N2E2_2543 0.50 +0.0
3,005,214 - Pf6N2E2_2543 0.50 +0.3
3,005,214 - Pf6N2E2_2543 0.50 +0.2
3,005,214 - Pf6N2E2_2543 0.50 -0.5
3,005,214 - Pf6N2E2_2543 0.50 +0.0
3,005,219 + Pf6N2E2_2543 0.50 +1.0
3,005,220 - Pf6N2E2_2543 0.50 +0.4
3,005,727 + Pf6N2E2_2543 0.79 +0.8
3,005,727 + Pf6N2E2_2543 0.79 +0.0
3,005,782 + Pf6N2E2_2543 0.82 -0.2
3,005,977 + -1.0
3,005,978 - +0.1
3,006,086 - +0.1
3,006,145 + -0.2
3,006,145 + -1.6
3,006,145 + -0.3
3,006,145 + +0.5
3,006,145 + -0.5
3,006,145 + +0.7
3,006,146 - +0.0
3,006,146 - -0.5
3,006,146 - +0.4
3,006,146 - +0.5
3,006,146 - +0.4
3,006,146 - -0.1
3,006,146 - +0.5
3,006,201 - +0.3
3,006,201 - +0.3
3,006,272 + -3.1
3,006,272 + -0.8
3,006,273 - +0.2
3,006,623 + Pf6N2E2_2544 0.38 -1.8
3,006,674 + Pf6N2E2_2544 0.43 -1.6
3,006,674 + Pf6N2E2_2544 0.43 +0.6
3,006,675 - Pf6N2E2_2544 0.43 -2.2
3,006,675 - Pf6N2E2_2544 0.43 +0.2
3,006,675 - Pf6N2E2_2544 0.43 -0.7
3,006,830 - Pf6N2E2_2544 0.56 -1.1
3,006,981 - Pf6N2E2_2544 0.68 -1.2
3,007,058 + Pf6N2E2_2544 0.75 +0.7
3,007,059 - Pf6N2E2_2544 0.75 -1.5
3,007,061 + Pf6N2E2_2544 0.75 +0.5
3,007,062 - Pf6N2E2_2544 0.75 +0.4
3,007,062 - Pf6N2E2_2544 0.75 +0.3
3,007,202 + Pf6N2E2_2544 0.87 -0.6
3,007,202 + Pf6N2E2_2544 0.87 -0.8
3,007,202 + Pf6N2E2_2544 0.87 -1.3
3,007,203 - Pf6N2E2_2544 0.87 +0.2
3,007,203 - Pf6N2E2_2544 0.87 -1.9
3,007,203 - Pf6N2E2_2544 0.87 -1.1
3,007,203 - Pf6N2E2_2544 0.87 -0.8
3,007,517 + -0.1
3,007,518 - +0.8
3,007,518 - +0.4
3,007,518 - +0.1
3,007,518 - +0.2
3,007,756 + -1.2
3,007,757 - +0.6
3,007,813 + Pf6N2E2_2546 0.29 -0.5
3,007,813 + Pf6N2E2_2546 0.29 +1.4
3,007,813 + Pf6N2E2_2546 0.29 -0.7
3,007,904 + Pf6N2E2_2546 0.74 +0.3
3,007,904 + Pf6N2E2_2546 0.74 +2.0
3,007,932 + Pf6N2E2_2546 0.88 +0.2
3,007,932 + Pf6N2E2_2546 0.88 +0.9
3,007,947 + -0.7
3,007,947 + -0.4
3,007,947 + +0.2
3,007,947 + -1.2
3,007,947 + -0.0
3,007,948 - +0.8
3,007,948 - +0.6
3,007,948 - -0.2
3,008,044 - -0.2
3,008,044 - -0.5
3,008,104 - +0.3
3,008,104 - +0.4
3,008,238 + Pf6N2E2_2547 0.35 +0.6
3,008,238 + Pf6N2E2_2547 0.35 -0.7
3,008,238 + Pf6N2E2_2547 0.35 -0.4
3,008,238 + Pf6N2E2_2547 0.35 -0.0
3,008,238 + Pf6N2E2_2547 0.35 +0.2
3,008,238 + Pf6N2E2_2547 0.35 -0.4
3,008,239 - Pf6N2E2_2547 0.35 -0.5
3,008,239 - Pf6N2E2_2547 0.35 +1.7
3,008,240 + Pf6N2E2_2547 0.35 -0.1
3,008,240 + Pf6N2E2_2547 0.35 +0.3
3,008,240 + Pf6N2E2_2547 0.35 -0.1
3,008,240 + Pf6N2E2_2547 0.35 +0.1
3,008,240 + Pf6N2E2_2547 0.35 +0.3
3,008,240 + Pf6N2E2_2547 0.35 +1.2
3,008,240 + Pf6N2E2_2547 0.35 -1.3
3,008,240 + Pf6N2E2_2547 0.35 -0.5
3,008,240 + Pf6N2E2_2547 0.35 -0.9
3,008,240 + Pf6N2E2_2547 0.35 -0.2
3,008,241 - Pf6N2E2_2547 0.35 -0.4
3,008,241 - Pf6N2E2_2547 0.35 -0.3
3,008,241 - Pf6N2E2_2547 0.35 +0.1
3,008,241 - Pf6N2E2_2547 0.35 +0.3
3,008,253 - Pf6N2E2_2547 0.39 +0.5
3,008,261 + Pf6N2E2_2547 0.41 +0.9
3,008,276 + Pf6N2E2_2547 0.45 +0.8
3,008,276 + Pf6N2E2_2547 0.45 +2.5
3,008,277 - Pf6N2E2_2547 0.45 +0.7

Or see this region's nucleotide sequence