Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2171

Experiment: Cobalt chloride 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2170 and Pf6N2E2_2171 are separated by 30 nucleotidesPf6N2E2_2171 and Pf6N2E2_2172 are separated by 101 nucleotides Pf6N2E2_2170 - Cysteine desulfurase (EC 2.8.1.7), at 2,575,441 to 2,576,694 _2170 Pf6N2E2_2171 - Rhodanese-related sulfurtransferase, at 2,576,725 to 2,577,159 _2171 Pf6N2E2_2172 - Transcriptional regulator, AraC family, at 2,577,261 to 2,578,220 _2172 Position (kb) 2576 2577 2578Strain fitness (log2 ratio) -3 -2 -1 0 1at 2575.803 kb on + strand, within Pf6N2E2_2170at 2575.804 kb on - strand, within Pf6N2E2_2170at 2575.873 kb on - strand, within Pf6N2E2_2170at 2575.873 kb on - strand, within Pf6N2E2_2170at 2575.877 kb on - strand, within Pf6N2E2_2170at 2575.877 kb on - strand, within Pf6N2E2_2170at 2575.911 kb on + strand, within Pf6N2E2_2170at 2575.942 kb on + strand, within Pf6N2E2_2170at 2575.943 kb on - strand, within Pf6N2E2_2170at 2575.943 kb on - strand, within Pf6N2E2_2170at 2575.943 kb on - strand, within Pf6N2E2_2170at 2576.021 kb on - strand, within Pf6N2E2_2170at 2576.021 kb on - strand, within Pf6N2E2_2170at 2576.203 kb on + strand, within Pf6N2E2_2170at 2576.204 kb on - strand, within Pf6N2E2_2170at 2576.205 kb on + strand, within Pf6N2E2_2170at 2576.206 kb on - strand, within Pf6N2E2_2170at 2576.206 kb on - strand, within Pf6N2E2_2170at 2576.206 kb on - strand, within Pf6N2E2_2170at 2576.206 kb on - strand, within Pf6N2E2_2170at 2576.360 kb on - strand, within Pf6N2E2_2170at 2576.418 kb on + strand, within Pf6N2E2_2170at 2576.419 kb on - strand, within Pf6N2E2_2170at 2576.476 kb on - strand, within Pf6N2E2_2170at 2576.476 kb on - strand, within Pf6N2E2_2170at 2576.627 kb on - strandat 2576.627 kb on - strandat 2576.627 kb on - strandat 2576.627 kb on - strandat 2576.898 kb on - strand, within Pf6N2E2_2171at 2576.898 kb on - strand, within Pf6N2E2_2171at 2576.925 kb on - strand, within Pf6N2E2_2171at 2576.925 kb on - strand, within Pf6N2E2_2171at 2576.980 kb on + strand, within Pf6N2E2_2171at 2576.996 kb on + strand, within Pf6N2E2_2171at 2576.997 kb on - strand, within Pf6N2E2_2171at 2576.997 kb on - strand, within Pf6N2E2_2171at 2577.014 kb on - strand, within Pf6N2E2_2171at 2577.014 kb on - strand, within Pf6N2E2_2171at 2577.167 kb on + strandat 2577.167 kb on + strandat 2577.168 kb on - strandat 2577.177 kb on + strandat 2577.177 kb on + strandat 2577.177 kb on + strandat 2577.177 kb on + strandat 2577.178 kb on - strandat 2577.178 kb on - strandat 2577.181 kb on + strandat 2577.181 kb on + strandat 2577.181 kb on + strandat 2577.182 kb on - strandat 2577.182 kb on - strandat 2577.199 kb on + strandat 2577.199 kb on + strandat 2577.200 kb on - strandat 2577.298 kb on - strandat 2577.379 kb on - strand, within Pf6N2E2_2172at 2577.440 kb on - strand, within Pf6N2E2_2172at 2577.440 kb on - strand, within Pf6N2E2_2172at 2577.601 kb on + strand, within Pf6N2E2_2172at 2577.601 kb on + strand, within Pf6N2E2_2172at 2577.695 kb on - strand, within Pf6N2E2_2172at 2577.711 kb on + strand, within Pf6N2E2_2172at 2577.711 kb on + strand, within Pf6N2E2_2172at 2577.712 kb on - strand, within Pf6N2E2_2172at 2577.712 kb on - strand, within Pf6N2E2_2172at 2577.712 kb on - strand, within Pf6N2E2_2172at 2577.712 kb on - strand, within Pf6N2E2_2172at 2577.792 kb on + strand, within Pf6N2E2_2172at 2577.792 kb on + strand, within Pf6N2E2_2172at 2577.793 kb on - strand, within Pf6N2E2_2172at 2577.848 kb on + strand, within Pf6N2E2_2172at 2577.848 kb on + strand, within Pf6N2E2_2172at 2577.848 kb on + strand, within Pf6N2E2_2172at 2577.849 kb on - strand, within Pf6N2E2_2172at 2578.151 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.16 mM
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2,575,803 + Pf6N2E2_2170 0.29 +0.9
2,575,804 - Pf6N2E2_2170 0.29 -0.5
2,575,873 - Pf6N2E2_2170 0.34 +0.5
2,575,873 - Pf6N2E2_2170 0.34 +1.0
2,575,877 - Pf6N2E2_2170 0.35 +0.4
2,575,877 - Pf6N2E2_2170 0.35 -0.0
2,575,911 + Pf6N2E2_2170 0.37 -0.2
2,575,942 + Pf6N2E2_2170 0.40 +0.8
2,575,943 - Pf6N2E2_2170 0.40 +0.5
2,575,943 - Pf6N2E2_2170 0.40 +0.4
2,575,943 - Pf6N2E2_2170 0.40 -1.0
2,576,021 - Pf6N2E2_2170 0.46 -3.1
2,576,021 - Pf6N2E2_2170 0.46 +0.5
2,576,203 + Pf6N2E2_2170 0.61 -0.1
2,576,204 - Pf6N2E2_2170 0.61 -0.2
2,576,205 + Pf6N2E2_2170 0.61 -0.0
2,576,206 - Pf6N2E2_2170 0.61 -0.7
2,576,206 - Pf6N2E2_2170 0.61 +1.1
2,576,206 - Pf6N2E2_2170 0.61 -0.4
2,576,206 - Pf6N2E2_2170 0.61 -0.4
2,576,360 - Pf6N2E2_2170 0.73 +0.8
2,576,418 + Pf6N2E2_2170 0.78 +0.4
2,576,419 - Pf6N2E2_2170 0.78 +0.2
2,576,476 - Pf6N2E2_2170 0.83 +1.6
2,576,476 - Pf6N2E2_2170 0.83 +0.1
2,576,627 - +0.5
2,576,627 - -0.8
2,576,627 - +0.7
2,576,627 - +0.1
2,576,898 - Pf6N2E2_2171 0.40 -1.7
2,576,898 - Pf6N2E2_2171 0.40 -0.5
2,576,925 - Pf6N2E2_2171 0.46 +0.0
2,576,925 - Pf6N2E2_2171 0.46 -0.6
2,576,980 + Pf6N2E2_2171 0.59 -0.5
2,576,996 + Pf6N2E2_2171 0.62 +0.0
2,576,997 - Pf6N2E2_2171 0.63 -0.3
2,576,997 - Pf6N2E2_2171 0.63 -0.9
2,577,014 - Pf6N2E2_2171 0.66 -0.4
2,577,014 - Pf6N2E2_2171 0.66 -0.5
2,577,167 + +0.5
2,577,167 + +0.1
2,577,168 - -0.5
2,577,177 + +0.7
2,577,177 + +1.4
2,577,177 + -0.4
2,577,177 + +0.2
2,577,178 - +1.2
2,577,178 - +1.3
2,577,181 + -0.3
2,577,181 + -0.1
2,577,181 + -0.0
2,577,182 - -0.2
2,577,182 - +0.6
2,577,199 + +0.7
2,577,199 + +0.7
2,577,200 - +0.8
2,577,298 - +0.2
2,577,379 - Pf6N2E2_2172 0.12 -0.4
2,577,440 - Pf6N2E2_2172 0.19 -0.1
2,577,440 - Pf6N2E2_2172 0.19 +0.7
2,577,601 + Pf6N2E2_2172 0.35 -0.2
2,577,601 + Pf6N2E2_2172 0.35 +0.1
2,577,695 - Pf6N2E2_2172 0.45 +0.3
2,577,711 + Pf6N2E2_2172 0.47 +0.2
2,577,711 + Pf6N2E2_2172 0.47 -1.0
2,577,712 - Pf6N2E2_2172 0.47 -0.3
2,577,712 - Pf6N2E2_2172 0.47 +0.1
2,577,712 - Pf6N2E2_2172 0.47 +0.5
2,577,712 - Pf6N2E2_2172 0.47 -0.8
2,577,792 + Pf6N2E2_2172 0.55 +0.7
2,577,792 + Pf6N2E2_2172 0.55 +0.2
2,577,793 - Pf6N2E2_2172 0.55 +0.1
2,577,848 + Pf6N2E2_2172 0.61 +0.1
2,577,848 + Pf6N2E2_2172 0.61 +0.3
2,577,848 + Pf6N2E2_2172 0.61 +0.2
2,577,849 - Pf6N2E2_2172 0.61 +0.0
2,578,151 + +0.8

Or see this region's nucleotide sequence