Experiment: Cobalt chloride 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2170 and Pf6N2E2_2171 are separated by 30 nucleotides Pf6N2E2_2171 and Pf6N2E2_2172 are separated by 101 nucleotides
Pf6N2E2_2170 - Cysteine desulfurase (EC 2.8.1.7), at 2,575,441 to 2,576,694
_2170
Pf6N2E2_2171 - Rhodanese-related sulfurtransferase, at 2,576,725 to 2,577,159
_2171
Pf6N2E2_2172 - Transcriptional regulator, AraC family, at 2,577,261 to 2,578,220
_2172
Position (kb)
2576
2577
2578 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2575.803 kb on + strand, within Pf6N2E2_2170 at 2575.804 kb on - strand, within Pf6N2E2_2170 at 2575.873 kb on - strand, within Pf6N2E2_2170 at 2575.873 kb on - strand, within Pf6N2E2_2170 at 2575.877 kb on - strand, within Pf6N2E2_2170 at 2575.877 kb on - strand, within Pf6N2E2_2170 at 2575.911 kb on + strand, within Pf6N2E2_2170 at 2575.942 kb on + strand, within Pf6N2E2_2170 at 2575.943 kb on - strand, within Pf6N2E2_2170 at 2575.943 kb on - strand, within Pf6N2E2_2170 at 2575.943 kb on - strand, within Pf6N2E2_2170 at 2576.021 kb on - strand, within Pf6N2E2_2170 at 2576.021 kb on - strand, within Pf6N2E2_2170 at 2576.203 kb on + strand, within Pf6N2E2_2170 at 2576.204 kb on - strand, within Pf6N2E2_2170 at 2576.205 kb on + strand, within Pf6N2E2_2170 at 2576.206 kb on - strand, within Pf6N2E2_2170 at 2576.206 kb on - strand, within Pf6N2E2_2170 at 2576.206 kb on - strand, within Pf6N2E2_2170 at 2576.206 kb on - strand, within Pf6N2E2_2170 at 2576.360 kb on - strand, within Pf6N2E2_2170 at 2576.418 kb on + strand, within Pf6N2E2_2170 at 2576.419 kb on - strand, within Pf6N2E2_2170 at 2576.476 kb on - strand, within Pf6N2E2_2170 at 2576.476 kb on - strand, within Pf6N2E2_2170 at 2576.627 kb on - strand at 2576.627 kb on - strand at 2576.627 kb on - strand at 2576.627 kb on - strand at 2576.898 kb on - strand, within Pf6N2E2_2171 at 2576.898 kb on - strand, within Pf6N2E2_2171 at 2576.925 kb on - strand, within Pf6N2E2_2171 at 2576.925 kb on - strand, within Pf6N2E2_2171 at 2576.980 kb on + strand, within Pf6N2E2_2171 at 2576.996 kb on + strand, within Pf6N2E2_2171 at 2576.997 kb on - strand, within Pf6N2E2_2171 at 2576.997 kb on - strand, within Pf6N2E2_2171 at 2577.014 kb on - strand, within Pf6N2E2_2171 at 2577.014 kb on - strand, within Pf6N2E2_2171 at 2577.167 kb on + strand at 2577.167 kb on + strand at 2577.168 kb on - strand at 2577.177 kb on + strand at 2577.177 kb on + strand at 2577.177 kb on + strand at 2577.177 kb on + strand at 2577.178 kb on - strand at 2577.178 kb on - strand at 2577.181 kb on + strand at 2577.181 kb on + strand at 2577.181 kb on + strand at 2577.182 kb on - strand at 2577.182 kb on - strand at 2577.199 kb on + strand at 2577.199 kb on + strand at 2577.200 kb on - strand at 2577.298 kb on - strand at 2577.379 kb on - strand, within Pf6N2E2_2172 at 2577.440 kb on - strand, within Pf6N2E2_2172 at 2577.440 kb on - strand, within Pf6N2E2_2172 at 2577.601 kb on + strand, within Pf6N2E2_2172 at 2577.601 kb on + strand, within Pf6N2E2_2172 at 2577.695 kb on - strand, within Pf6N2E2_2172 at 2577.711 kb on + strand, within Pf6N2E2_2172 at 2577.711 kb on + strand, within Pf6N2E2_2172 at 2577.712 kb on - strand, within Pf6N2E2_2172 at 2577.712 kb on - strand, within Pf6N2E2_2172 at 2577.712 kb on - strand, within Pf6N2E2_2172 at 2577.712 kb on - strand, within Pf6N2E2_2172 at 2577.792 kb on + strand, within Pf6N2E2_2172 at 2577.792 kb on + strand, within Pf6N2E2_2172 at 2577.793 kb on - strand, within Pf6N2E2_2172 at 2577.848 kb on + strand, within Pf6N2E2_2172 at 2577.848 kb on + strand, within Pf6N2E2_2172 at 2577.848 kb on + strand, within Pf6N2E2_2172 at 2577.849 kb on - strand, within Pf6N2E2_2172 at 2578.151 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.16 mM remove 2,575,803 + Pf6N2E2_2170 0.29 +0.9 2,575,804 - Pf6N2E2_2170 0.29 -0.5 2,575,873 - Pf6N2E2_2170 0.34 +0.5 2,575,873 - Pf6N2E2_2170 0.34 +1.0 2,575,877 - Pf6N2E2_2170 0.35 +0.4 2,575,877 - Pf6N2E2_2170 0.35 -0.0 2,575,911 + Pf6N2E2_2170 0.37 -0.2 2,575,942 + Pf6N2E2_2170 0.40 +0.8 2,575,943 - Pf6N2E2_2170 0.40 +0.5 2,575,943 - Pf6N2E2_2170 0.40 +0.4 2,575,943 - Pf6N2E2_2170 0.40 -1.0 2,576,021 - Pf6N2E2_2170 0.46 -3.1 2,576,021 - Pf6N2E2_2170 0.46 +0.5 2,576,203 + Pf6N2E2_2170 0.61 -0.1 2,576,204 - Pf6N2E2_2170 0.61 -0.2 2,576,205 + Pf6N2E2_2170 0.61 -0.0 2,576,206 - Pf6N2E2_2170 0.61 -0.7 2,576,206 - Pf6N2E2_2170 0.61 +1.1 2,576,206 - Pf6N2E2_2170 0.61 -0.4 2,576,206 - Pf6N2E2_2170 0.61 -0.4 2,576,360 - Pf6N2E2_2170 0.73 +0.8 2,576,418 + Pf6N2E2_2170 0.78 +0.4 2,576,419 - Pf6N2E2_2170 0.78 +0.2 2,576,476 - Pf6N2E2_2170 0.83 +1.6 2,576,476 - Pf6N2E2_2170 0.83 +0.1 2,576,627 - +0.5 2,576,627 - -0.8 2,576,627 - +0.7 2,576,627 - +0.1 2,576,898 - Pf6N2E2_2171 0.40 -1.7 2,576,898 - Pf6N2E2_2171 0.40 -0.5 2,576,925 - Pf6N2E2_2171 0.46 +0.0 2,576,925 - Pf6N2E2_2171 0.46 -0.6 2,576,980 + Pf6N2E2_2171 0.59 -0.5 2,576,996 + Pf6N2E2_2171 0.62 +0.0 2,576,997 - Pf6N2E2_2171 0.63 -0.3 2,576,997 - Pf6N2E2_2171 0.63 -0.9 2,577,014 - Pf6N2E2_2171 0.66 -0.4 2,577,014 - Pf6N2E2_2171 0.66 -0.5 2,577,167 + +0.5 2,577,167 + +0.1 2,577,168 - -0.5 2,577,177 + +0.7 2,577,177 + +1.4 2,577,177 + -0.4 2,577,177 + +0.2 2,577,178 - +1.2 2,577,178 - +1.3 2,577,181 + -0.3 2,577,181 + -0.1 2,577,181 + -0.0 2,577,182 - -0.2 2,577,182 - +0.6 2,577,199 + +0.7 2,577,199 + +0.7 2,577,200 - +0.8 2,577,298 - +0.2 2,577,379 - Pf6N2E2_2172 0.12 -0.4 2,577,440 - Pf6N2E2_2172 0.19 -0.1 2,577,440 - Pf6N2E2_2172 0.19 +0.7 2,577,601 + Pf6N2E2_2172 0.35 -0.2 2,577,601 + Pf6N2E2_2172 0.35 +0.1 2,577,695 - Pf6N2E2_2172 0.45 +0.3 2,577,711 + Pf6N2E2_2172 0.47 +0.2 2,577,711 + Pf6N2E2_2172 0.47 -1.0 2,577,712 - Pf6N2E2_2172 0.47 -0.3 2,577,712 - Pf6N2E2_2172 0.47 +0.1 2,577,712 - Pf6N2E2_2172 0.47 +0.5 2,577,712 - Pf6N2E2_2172 0.47 -0.8 2,577,792 + Pf6N2E2_2172 0.55 +0.7 2,577,792 + Pf6N2E2_2172 0.55 +0.2 2,577,793 - Pf6N2E2_2172 0.55 +0.1 2,577,848 + Pf6N2E2_2172 0.61 +0.1 2,577,848 + Pf6N2E2_2172 0.61 +0.3 2,577,848 + Pf6N2E2_2172 0.61 +0.2 2,577,849 - Pf6N2E2_2172 0.61 +0.0 2,578,151 + +0.8
Or see this region's nucleotide sequence