Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS15920

Experiment: R2A with Manganese (II) chloride tetrahydrate 2.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Manganese (II) chloride tetrahydrate 2.5 mM
3,504,378	+				-0.4
3,504,378	+				-2.2
3,504,378	+				+0.1
3,504,378	+				+1.2
3,504,378	+				+0.2
3,504,378	+				-0.9
3,504,378	+				-1.2
3,504,378	+				+1.6
3,504,379	-				-0.0
3,504,379	-				+0.1
3,504,379	-				+0.3
3,504,379	-				+0.6
3,504,379	-				-0.3
3,504,379	-				-1.1
3,504,379	-				+0.5
3,504,379	-				-1.3
3,504,379	-				-0.3
3,504,379	-				-0.0
3,504,379	-				-0.2
3,504,590	-		LRK54_RS15915	0.22	-1.2
3,504,613	+		LRK54_RS15915	0.25	+1.0
3,504,613	+		LRK54_RS15915	0.25	+1.0
3,504,613	+		LRK54_RS15915	0.25	+0.0
3,504,613	+		LRK54_RS15915	0.25	+0.1
3,504,613	+		LRK54_RS15915	0.25	+0.1
3,504,613	+		LRK54_RS15915	0.25	-1.3
3,504,613	+		LRK54_RS15915	0.25	-0.0
3,504,614	-		LRK54_RS15915	0.25	+0.0
3,504,614	-		LRK54_RS15915	0.25	-0.5
3,504,614	-		LRK54_RS15915	0.25	-0.5
3,504,614	-		LRK54_RS15915	0.25	+0.8
3,504,614	-		LRK54_RS15915	0.25	-0.2
3,504,616	+		LRK54_RS15915	0.25	-0.4
3,504,616	+		LRK54_RS15915	0.25	-0.4
3,504,617	-		LRK54_RS15915	0.25	+0.0
3,504,865	+		LRK54_RS15915	0.53	+0.2
3,504,866	-		LRK54_RS15915	0.53	+2.1
3,504,866	-		LRK54_RS15915	0.53	-0.7
3,504,866	-		LRK54_RS15915	0.53	+0.0
3,504,904	+		LRK54_RS15915	0.57	-0.4
3,504,905	-		LRK54_RS15915	0.58	-1.5
3,504,905	-		LRK54_RS15915	0.58	-0.1
3,505,066	+		LRK54_RS15915	0.76	+0.2
3,505,067	-		LRK54_RS15915	0.76	-1.1
3,505,067	-		LRK54_RS15915	0.76	-0.5
3,505,109	+		LRK54_RS15915	0.81	+0.2
3,505,109	+		LRK54_RS15915	0.81	+1.9
3,505,109	+		LRK54_RS15915	0.81	+0.2
3,505,109	+		LRK54_RS15915	0.81	+0.4
3,505,110	-		LRK54_RS15915	0.81	-0.4
3,505,110	-		LRK54_RS15915	0.81	-1.2
3,505,110	-		LRK54_RS15915	0.81	-0.4
3,505,110	-		LRK54_RS15915	0.81	-0.2
3,505,110	-		LRK54_RS15915	0.81	-0.5
3,505,110	-		LRK54_RS15915	0.81	+1.9
3,505,110	-		LRK54_RS15915	0.81	-0.5
3,505,110	-		LRK54_RS15915	0.81	+0.7
3,505,110	-		LRK54_RS15915	0.81	-0.9
3,505,110	-		LRK54_RS15915	0.81	+0.6
3,505,153	+		LRK54_RS15915	0.85	+0.2
3,505,153	+		LRK54_RS15915	0.85	-0.5
3,505,153	+		LRK54_RS15915	0.85	-0.3
3,505,153	+		LRK54_RS15915	0.85	-0.6
3,505,153	+		LRK54_RS15915	0.85	-0.9
3,505,153	+		LRK54_RS15915	0.85	-1.3
3,505,154	-		LRK54_RS15915	0.86	+0.4
3,505,154	-		LRK54_RS15915	0.86	+0.7
3,505,154	-		LRK54_RS15915	0.86	-0.4
3,505,154	-		LRK54_RS15915	0.86	+0.3
3,505,333	+				-0.0
3,505,333	+				-0.4
3,505,333	+				+0.2
3,505,333	+				+1.8
3,505,333	+				-1.8
3,505,333	+				-0.3
3,505,333	+				-0.4
3,505,334	-				-0.3
3,505,334	-				+1.0
3,505,732	+		LRK54_RS15920	0.18	+0.4
3,505,732	+		LRK54_RS15920	0.18	+1.5
3,505,732	+		LRK54_RS15920	0.18	+0.5
3,505,732	+		LRK54_RS15920	0.18	+0.2
3,505,732	+		LRK54_RS15920	0.18	-0.4
3,505,732	+		LRK54_RS15920	0.18	+0.7
3,505,732	+		LRK54_RS15920	0.18	+1.4
3,505,732	+		LRK54_RS15920	0.18	+0.8
3,505,732	+		LRK54_RS15920	0.18	+0.6
3,505,732	+		LRK54_RS15920	0.18	+1.0
3,505,732	+		LRK54_RS15920	0.18	+0.2
3,505,732	+		LRK54_RS15920	0.18	-0.0
3,505,732	+		LRK54_RS15920	0.18	-0.4
3,505,732	+		LRK54_RS15920	0.18	+0.8
3,505,732	+		LRK54_RS15920	0.18	+1.6
3,505,732	+		LRK54_RS15920	0.18	+0.5
3,505,732	+		LRK54_RS15920	0.18	+0.1
3,505,732	+		LRK54_RS15920	0.18	+0.8
3,505,733	-		LRK54_RS15920	0.18	+0.4
3,505,733	-		LRK54_RS15920	0.18	+0.2
3,505,733	-		LRK54_RS15920	0.18	+1.4
3,505,733	-		LRK54_RS15920	0.18	+0.8
3,505,733	-		LRK54_RS15920	0.18	-0.3
3,505,733	-		LRK54_RS15920	0.18	+0.7
3,505,733	-		LRK54_RS15920	0.18	+1.0
3,505,733	-		LRK54_RS15920	0.18	+1.2
3,505,733	-		LRK54_RS15920	0.18	-1.5
3,505,733	-		LRK54_RS15920	0.18	-0.4
3,505,733	-		LRK54_RS15920	0.18	-0.5
3,505,733	-		LRK54_RS15920	0.18	-0.0
3,505,733	-		LRK54_RS15920	0.18	+0.2
3,505,733	-		LRK54_RS15920	0.18	+0.1
3,505,733	-		LRK54_RS15920	0.18	+1.4
3,505,934	+		LRK54_RS15920	0.28	+1.7
3,505,934	+		LRK54_RS15920	0.28	+0.5
3,505,934	+		LRK54_RS15920	0.28	-0.9
3,505,934	+		LRK54_RS15920	0.28	-0.7
3,505,934	+		LRK54_RS15920	0.28	+1.0
3,505,934	+		LRK54_RS15920	0.28	+0.0
3,505,934	+		LRK54_RS15920	0.28	-0.4
3,505,935	-		LRK54_RS15920	0.28	-0.9
3,505,935	-		LRK54_RS15920	0.28	+0.6
3,505,935	-		LRK54_RS15920	0.28	+0.0
3,505,935	-		LRK54_RS15920	0.28	-0.5
3,505,935	-		LRK54_RS15920	0.28	-0.6
3,505,935	-		LRK54_RS15920	0.28	+0.2
3,505,935	-		LRK54_RS15920	0.28	-0.3
3,505,956	+		LRK54_RS15920	0.29	+0.9
3,505,957	+		LRK54_RS15920	0.29	-1.0
3,505,957	+		LRK54_RS15920	0.29	+2.4
3,505,957	+		LRK54_RS15920	0.29	+2.0
3,505,957	+		LRK54_RS15920	0.29	-1.2
3,505,957	+		LRK54_RS15920	0.29	+0.7
3,505,957	+		LRK54_RS15920	0.29	+0.6
3,505,957	+		LRK54_RS15920	0.29	-0.6
3,505,957	+		LRK54_RS15920	0.29	+1.1
3,505,957	+		LRK54_RS15920	0.29	+1.4
3,505,957	+		LRK54_RS15920	0.29	+1.2
3,505,957	+		LRK54_RS15920	0.29	+1.5
3,505,958	-		LRK54_RS15920	0.29	+0.9
3,505,958	-		LRK54_RS15920	0.29	-0.8
3,505,958	-		LRK54_RS15920	0.29	-0.7
3,505,958	-		LRK54_RS15920	0.29	+1.1
3,505,958	-		LRK54_RS15920	0.29	-0.4
3,505,958	-		LRK54_RS15920	0.29	-1.4
3,505,958	-		LRK54_RS15920	0.29	+0.3
3,505,958	-		LRK54_RS15920	0.29	+1.9
3,505,958	-		LRK54_RS15920	0.29	+1.0
3,505,958	-		LRK54_RS15920	0.29	+0.3
3,505,958	-		LRK54_RS15920	0.29	+0.4
3,505,958	-		LRK54_RS15920	0.29	-0.5
3,505,958	-		LRK54_RS15920	0.29	+1.2
3,505,958	-		LRK54_RS15920	0.29	+0.4
3,505,994	-		LRK54_RS15920	0.31	+0.0
3,506,107	+		LRK54_RS15920	0.37	-0.6
3,506,107	+		LRK54_RS15920	0.37	-0.8
3,506,107	+		LRK54_RS15920	0.37	+1.0
3,506,107	+		LRK54_RS15920	0.37	+0.2
3,506,108	-		LRK54_RS15920	0.37	+0.3
3,506,108	-		LRK54_RS15920	0.37	-0.6
3,506,108	-		LRK54_RS15920	0.37	-0.3
3,506,108	-		LRK54_RS15920	0.37	+2.4
3,506,108	-		LRK54_RS15920	0.37	+2.5
3,506,108	-		LRK54_RS15920	0.37	+2.5
3,506,500	+		LRK54_RS15920	0.56	-0.1
3,506,500	+		LRK54_RS15920	0.56	+0.3
3,506,500	+		LRK54_RS15920	0.56	+0.8
3,506,500	+		LRK54_RS15920	0.56	+0.1
3,506,500	+		LRK54_RS15920	0.56	+0.2
3,506,500	+		LRK54_RS15920	0.56	-0.4
3,506,500	+		LRK54_RS15920	0.56	+0.1
3,506,500	+		LRK54_RS15920	0.56	+0.0
3,506,501	-		LRK54_RS15920	0.56	-0.8
3,506,501	-		LRK54_RS15920	0.56	+0.4
3,506,501	-		LRK54_RS15920	0.56	+0.3
3,506,501	-		LRK54_RS15920	0.56	+0.0
3,506,501	-		LRK54_RS15920	0.56	+0.1
3,506,824	+		LRK54_RS15920	0.72	+0.6
3,506,825	-		LRK54_RS15920	0.73	+0.2
3,506,825	-		LRK54_RS15920	0.73	-0.4
3,506,925	+		LRK54_RS15920	0.77	+0.5
3,506,927	+		LRK54_RS15920	0.78	+1.7
3,507,035	+		LRK54_RS15920	0.83	-0.9
3,507,036	-		LRK54_RS15920	0.83	-0.1
3,507,036	-		LRK54_RS15920	0.83	-0.5
3,507,049	+		LRK54_RS15920	0.84	-0.4
3,507,049	+		LRK54_RS15920	0.84	+0.7
3,507,049	+		LRK54_RS15920	0.84	+0.1
3,507,049	+		LRK54_RS15920	0.84	+1.0
3,507,049	+		LRK54_RS15920	0.84	+2.0
3,507,049	+		LRK54_RS15920	0.84	+0.9
3,507,049	+		LRK54_RS15920	0.84	+0.2
3,507,049	+		LRK54_RS15920	0.84	-0.5
3,507,049	+		LRK54_RS15920	0.84	+0.3
3,507,049	+		LRK54_RS15920	0.84	+0.7
3,507,049	+		LRK54_RS15920	0.84	+0.9
3,507,049	+		LRK54_RS15920	0.84	+0.7
3,507,049	+		LRK54_RS15920	0.84	+1.4
3,507,049	+		LRK54_RS15920	0.84	-0.6
3,507,049	+		LRK54_RS15920	0.84	-0.9
3,507,049	+		LRK54_RS15920	0.84	+0.4
3,507,049	+		LRK54_RS15920	0.84	+0.7
3,507,049	+		LRK54_RS15920	0.84	+0.3
3,507,050	-		LRK54_RS15920	0.84	-0.6
3,507,050	-		LRK54_RS15920	0.84	+0.9
3,507,050	-		LRK54_RS15920	0.84	+0.2
3,507,050	-		LRK54_RS15920	0.84	+2.0
3,507,050	-		LRK54_RS15920	0.84	+0.9
3,507,050	-		LRK54_RS15920	0.84	-0.1
3,507,050	-		LRK54_RS15920	0.84	+1.2
3,507,050	-		LRK54_RS15920	0.84	+0.6
3,507,050	-		LRK54_RS15920	0.84	+0.2
3,507,050	-		LRK54_RS15920	0.84	+0.4
3,507,050	-		LRK54_RS15920	0.84	+0.3
3,507,050	-		LRK54_RS15920	0.84	+0.7
3,507,050	-		LRK54_RS15920	0.84	-0.0
3,507,050	-		LRK54_RS15920	0.84	+0.4
3,507,103	+		LRK54_RS15920	0.86	+0.4
3,507,103	+		LRK54_RS15920	0.86	+0.4
3,507,103	+		LRK54_RS15920	0.86	+0.4
3,507,104	-		LRK54_RS15920	0.86	+1.3
3,507,104	-		LRK54_RS15920	0.86	+0.1
3,507,104	-		LRK54_RS15920	0.86	-0.9
3,507,104	-		LRK54_RS15920	0.86	-0.7
3,507,155	+		LRK54_RS15920	0.89	+0.9
3,507,155	+		LRK54_RS15920	0.89	+0.5
3,507,155	+		LRK54_RS15920	0.89	+0.0
3,507,155	+		LRK54_RS15920	0.89	+1.0
3,507,155	+		LRK54_RS15920	0.89	-0.1
3,507,155	+		LRK54_RS15920	0.89	+0.8
3,507,155	+		LRK54_RS15920	0.89	+0.3
3,507,155	+		LRK54_RS15920	0.89	-0.4
3,507,155	+		LRK54_RS15920	0.89	-2.2
3,507,155	+		LRK54_RS15920	0.89	+0.4
3,507,155	+		LRK54_RS15920	0.89	+0.8
3,507,155	+		LRK54_RS15920	0.89	-0.2
3,507,155	+		LRK54_RS15920	0.89	-1.8
3,507,155	+		LRK54_RS15920	0.89	+0.1
3,507,155	+		LRK54_RS15920	0.89	+0.3
3,507,155	+		LRK54_RS15920	0.89	+0.4
3,507,155	+		LRK54_RS15920	0.89	+0.2
3,507,156	-		LRK54_RS15920	0.89	-0.6
3,507,156	-		LRK54_RS15920	0.89	+0.2
3,507,156	-		LRK54_RS15920	0.89	+2.5
3,507,156	-		LRK54_RS15920	0.89	+1.0
3,507,156	-		LRK54_RS15920	0.89	-0.2
3,507,156	-		LRK54_RS15920	0.89	+0.4
3,507,156	-		LRK54_RS15920	0.89	+0.5
3,507,156	-		LRK54_RS15920	0.89	-0.4
3,507,156	-		LRK54_RS15920	0.89	+0.3
3,507,156	-		LRK54_RS15920	0.89	+2.7
3,507,156	-		LRK54_RS15920	0.89	+1.2
3,507,156	-		LRK54_RS15920	0.89	-0.4
3,507,331	+				-0.4
3,507,331	+				-0.3
3,507,331	+				-0.6
3,507,332	-				+1.1
3,507,332	-				-1.4
3,507,332	-				+1.9
3,507,454	+				+0.1
3,507,454	+				-0.1
3,507,454	+				-0.4
3,507,454	+				-0.5
3,507,454	+				-0.7
3,507,454	+				-1.3
3,507,454	+				+0.1
3,507,454	+				-0.8
3,507,454	+				+0.0
3,507,454	+				-0.7
3,507,455	-				-0.8
3,507,455	-				-0.3
3,507,455	-				+0.3
3,507,455	-				+0.1
3,507,455	-				-0.4
3,507,455	-				+0.1
3,507,455	-				-0.9
3,507,455	-				-1.1
3,507,455	-				-0.3
3,507,455	-				+0.2
3,507,455	-				+0.2
3,507,455	-				-0.4
3,507,455	-				+0.5
3,507,545	+				-0.7
3,507,545	+				+0.0
3,507,545	+				-0.4
3,507,546	-				-0.2
3,507,546	-				+0.9
3,507,546	-				+0.7
3,507,546	-				-0.7
3,507,546	-				+1.3
3,507,611	+		LRK54_RS15925	0.25	+0.7
3,507,611	+		LRK54_RS15925	0.25	-0.3
3,507,611	+		LRK54_RS15925	0.25	+0.9
3,507,611	+		LRK54_RS15925	0.25	+0.4
3,507,866	+				-0.0
3,507,866	+				+0.3
3,507,866	+				-0.4
3,507,867	-				-0.7
3,507,867	-				+2.7
3,507,867	-				+0.1
3,507,867	-				-1.3
3,507,867	-				-0.3
3,507,900	+				-1.1
3,507,900	+				+0.2
3,507,900	+				-1.0
3,507,900	+				+0.0
3,507,900	+				-0.0
3,507,900	+				+0.1
3,507,900	+				-1.1
3,507,900	+				-0.1
3,507,900	+				-1.1
3,507,900	+				+0.4
3,507,900	+				-0.3
3,507,900	+				+1.4
3,507,900	+				-1.0
3,507,900	+				+0.3
3,507,900	+				+0.0
3,507,900	+				-0.1
3,507,900	+				-1.8
3,507,900	+				-0.3
3,507,900	+				-1.1
3,507,900	+				-1.0
3,507,900	+				+1.0
3,507,900	+				-0.7
3,507,900	+				+0.8
3,507,900	+				-2.1
3,507,900	+				+0.7
3,507,900	+				+0.5
3,507,900	+				+0.6
3,507,900	+				+0.4
3,507,900	+				-0.6
3,507,900	+				-0.1
3,507,900	+				-0.4
3,507,901	-				+1.0
3,507,901	-				+1.3
3,507,901	-				+0.1
3,507,901	-				+0.1
3,507,901	-				+2.0
3,507,901	-				-0.2
3,507,901	-				-0.4
3,507,901	-				-0.1
3,507,901	-				-0.2
3,507,901	-				-0.4
3,507,901	-				-0.1
3,507,901	-				-1.2
3,507,901	-				+0.1
3,507,901	-				+0.9
3,507,901	-				+0.6
3,507,901	-				-0.4
3,507,901	-				+0.5
3,507,901	-				-0.2
3,507,901	-				+0.4
3,507,901	-				-0.3
3,507,901	-				-0.0
3,507,901	-				+0.6
3,507,901	-				-0.6