Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS10565

Experiment: R2A with Manganese (II) chloride tetrahydrate 2.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Manganese (II) chloride tetrahydrate 2.5 mM
2,337,395	+				-0.4
2,337,395	+				-0.1
2,337,395	+				-0.3
2,337,395	+				-1.4
2,337,395	+				-1.5
2,337,395	+				+0.9
2,337,395	+				-0.5
2,337,395	+				+0.0
2,337,395	+				-0.5
2,337,396	-				-0.4
2,337,396	-				-0.2
2,337,396	-				-1.4
2,337,396	-				-0.7
2,337,396	-				-0.8
2,337,396	-				-0.3
2,337,396	-				+0.6
2,337,396	-				+0.4
2,337,403	+				+0.2
2,337,403	+				-0.6
2,337,403	+				-0.3
2,337,404	-				+0.4
2,337,448	+				-0.7
2,337,448	+				+0.5
2,337,449	-				-1.6
2,337,449	-				+0.1
2,337,449	-				-1.2
2,337,449	-				-0.7
2,337,449	-				-2.1
2,337,450	+				+0.5
2,337,450	+				-1.0
2,337,450	+				-0.4
2,337,450	+				-1.7
2,337,450	+				+0.0
2,337,450	+				+0.4
2,337,450	+				-0.0
2,337,450	+				-0.3
2,337,450	+				-0.1
2,337,450	+				-1.3
2,337,451	-				+0.1
2,337,451	-				-1.3
2,337,451	-				-0.1
2,337,451	-				-0.4
2,337,451	-				-0.0
2,337,451	-				-1.6
2,337,451	-				-1.9
2,337,451	-				-0.6
2,337,451	-				-1.0
2,337,451	-				-1.1
2,337,451	-				+0.4
2,337,451	-				-1.8
2,337,451	-				-0.0
2,337,451	-				-0.6
2,337,451	-				+0.9
2,337,451	-				+0.1
2,337,451	-				-1.2
2,337,451	-				-0.1
2,337,451	-				+0.4
2,337,634	+		LRK54_RS10565	0.55	-1.5
2,337,634	+		LRK54_RS10565	0.55	-0.3
2,337,634	+		LRK54_RS10565	0.55	-0.9
2,337,634	+		LRK54_RS10565	0.55	+0.3
2,337,634	+		LRK54_RS10565	0.55	-1.2
2,337,634	+		LRK54_RS10565	0.55	-0.6
2,337,634	+		LRK54_RS10565	0.55	-0.8
2,337,634	+		LRK54_RS10565	0.55	+0.2
2,337,634	+		LRK54_RS10565	0.55	-0.4
2,337,634	+		LRK54_RS10565	0.55	-1.0
2,337,634	+		LRK54_RS10565	0.55	-2.9
2,337,635	-		LRK54_RS10565	0.55	-0.9
2,337,635	-		LRK54_RS10565	0.55	-0.6
2,337,635	-		LRK54_RS10565	0.55	+0.3
2,337,635	-		LRK54_RS10565	0.55	-0.8
2,337,635	-		LRK54_RS10565	0.55	-0.4
2,337,635	-		LRK54_RS10565	0.55	-0.3
2,337,635	-		LRK54_RS10565	0.55	-0.4
2,337,635	-		LRK54_RS10565	0.55	-1.2
2,337,650	-		LRK54_RS10565	0.60	-1.0
2,337,650	-		LRK54_RS10565	0.60	-1.7
2,337,660	-		LRK54_RS10565	0.63	+0.7
2,337,711	+		LRK54_RS10565	0.78	-0.3
2,337,711	+		LRK54_RS10565	0.78	-0.6
2,337,711	+		LRK54_RS10565	0.78	+0.1
2,337,711	+		LRK54_RS10565	0.78	-1.2
2,337,711	+		LRK54_RS10565	0.78	+0.1
2,337,712	-		LRK54_RS10565	0.78	-0.8
2,337,712	-		LRK54_RS10565	0.78	-2.5
2,337,712	-		LRK54_RS10565	0.78	-0.0
2,337,712	-		LRK54_RS10565	0.78	-2.3
2,337,712	-		LRK54_RS10565	0.78	-1.7
2,337,804	+				+0.3
2,337,804	+				-0.2
2,337,804	+				+1.4
2,337,805	-				+0.4
2,337,805	-				+0.5
2,337,805	-				-0.3
2,337,805	-				-1.0
2,337,805	-				-1.1
2,337,871	+				+0.6
2,337,871	+				-0.9
2,337,871	+				+0.6
2,337,871	+				-0.2
2,337,871	+				-0.5
2,337,871	+				-0.6
2,337,871	+				-0.2
2,337,871	+				+0.5
2,337,871	+				-0.5
2,337,871	+				+0.9
2,337,871	+				+0.8
2,337,871	+				-0.6
2,337,872	-				-0.7
2,337,872	-				-0.4
2,337,872	-				-0.9
2,337,872	-				+0.2
2,337,872	-				-0.1
2,337,872	-				-0.5
2,337,872	-				-1.0
2,337,872	-				+0.7
2,337,872	-				-0.8
2,337,872	-				+0.8
2,337,872	-				-0.5
2,337,872	-				+0.5
2,337,872	-				-1.8
2,337,872	-				-0.4
2,337,872	-				-0.4
2,337,883	+				-1.6
2,337,883	+				-0.8
2,337,883	+				-1.4
2,337,884	-				-1.5
2,337,884	-				-0.6
2,337,884	-				-1.0
2,337,884	-				+0.2
2,337,902	+				-0.9
2,337,902	+				-0.2
2,337,902	+				+1.1
2,337,902	+				-0.4
2,337,903	-				-1.4
2,337,903	-				+1.8
2,337,903	-				-1.9
2,337,932	+				-0.7
2,337,932	+				-1.8
2,337,932	+				-0.3
2,337,932	+				-0.7
2,337,932	+				-0.2
2,337,932	+				+0.3
2,337,932	+				-0.7
2,337,932	+				-0.8
2,337,932	+				+0.3
2,337,932	+				-0.2
2,337,932	+				-0.5
2,337,933	-				-1.4
2,337,933	-				-0.7
2,337,933	-				+0.2
2,337,933	-				-1.1
2,337,933	-				-0.5
2,337,933	-				+1.1
2,337,933	-				-0.8
2,337,933	-				-0.4
2,337,933	-				-0.2
2,337,933	-				+0.5
2,337,933	-				-1.5
2,337,933	-				+1.2
2,337,933	-				-1.3
2,337,933	-				+1.3
2,337,933	-				-0.3
2,337,935	+				+0.4
2,337,935	+				-0.4
2,337,935	+				-0.8
2,337,935	+				-0.1
2,337,935	+				-0.6
2,337,935	+				+0.3
2,337,935	+				-0.3
2,337,935	+				-1.5
2,337,935	+				-0.1
2,337,935	+				-0.7
2,337,935	+				-0.8
2,337,935	+				+0.5
2,337,935	+				+0.8
2,337,935	+				-0.3
2,337,935	+				+0.4
2,337,935	+				-0.6
2,337,935	+				-0.3
2,337,936	-				-0.6
2,337,936	-				-0.0
2,337,936	-				-0.2
2,337,936	-				+1.7
2,337,936	-				-1.2
2,337,936	-				-2.2
2,337,936	-				-1.4
2,337,936	-				-0.4
2,337,939	+				+0.1
2,337,939	+				-0.7
2,337,939	+				+0.4
2,337,940	-				-2.2
2,337,940	-				-0.1
2,337,940	-				-0.2
2,337,974	+				-0.6
2,337,975	-				-1.4
2,337,975	-				-0.1
2,338,138	+		LRK54_RS10570	0.66	-1.9
2,338,138	+		LRK54_RS10570	0.66	-1.3
2,338,138	+		LRK54_RS10570	0.66	-1.8
2,338,138	+		LRK54_RS10570	0.66	-1.9
2,338,138	+		LRK54_RS10570	0.66	+0.4
2,338,139	-		LRK54_RS10570	0.66	-1.2
2,338,139	-		LRK54_RS10570	0.66	-0.8
2,338,139	-		LRK54_RS10570	0.66	-1.4
2,338,139	-		LRK54_RS10570	0.66	+0.3
2,338,139	-		LRK54_RS10570	0.66	-2.0
2,338,139	-		LRK54_RS10570	0.66	+0.1
2,338,291	+				-0.7
2,338,291	+				-0.3
2,338,291	+				-1.3
2,338,291	+				-0.6
2,338,292	-				+1.1
2,338,292	-				+0.6
2,338,292	-				+0.4
2,338,292	-				+0.5
2,338,292	-				-0.8
2,338,292	-				-0.1
2,338,292	-				-0.3
2,338,292	-				-0.8
2,338,292	-				-0.1
2,338,292	-				+0.5
2,338,295	+				-1.6
2,338,295	+				-0.1
2,338,295	+				-0.6
2,338,295	+				-1.2
2,338,295	+				+0.0
2,338,295	+				-0.5
2,338,295	+				-0.2
2,338,295	+				-0.8
2,338,295	+				-1.6
2,338,295	+				+0.4
2,338,295	+				-0.2
2,338,295	+				-0.5
2,338,295	+				+0.2
2,338,295	+				-1.0
2,338,295	+				+0.2
2,338,295	+				-0.3
2,338,295	+				-0.5
2,338,295	+				-0.9
2,338,296	-				-0.4
2,338,296	-				-0.8
2,338,296	-				-0.9
2,338,296	-				-1.2
2,338,296	-				-0.4
2,338,296	-				-0.5
2,338,296	-				-0.2
2,338,296	-				-1.9
2,338,296	-				-1.1
2,338,296	-				+0.2
2,338,298	+				-0.0
2,338,298	+				+0.4
2,338,298	+				+0.6
2,338,298	-				-1.3
2,338,299	-				-0.1
2,338,299	-				-1.6
2,338,299	-				+0.0
2,338,299	-				-0.1
2,338,299	-				-0.2
2,338,443	+				+0.2
2,338,443	+				-1.0
2,338,443	+				-0.7
2,338,443	+				+0.3
2,338,443	+				+0.0
2,338,443	+				-1.7
2,338,443	+				-1.1
2,338,443	+				-0.8
2,338,443	+				-0.7
2,338,443	+				-1.0
2,338,443	+				-1.6
2,338,444	-				-0.2
2,338,444	-				+0.6
2,338,444	-				+0.2
2,338,444	-				-1.2
2,338,444	-				+0.2
2,338,444	-				-0.1
2,338,444	-				+1.9
2,338,444	-				-0.8
2,338,444	-				-0.7
2,338,444	-				-0.5
2,338,444	-				-0.6
2,338,474	+				+0.5
2,338,474	+				-1.1
2,338,474	+				-0.1
2,338,475	-				-0.9
2,338,475	-				-0.4
2,338,475	-				-0.7
2,338,475	-				-0.0
2,338,540	+		LRK54_RS10575	0.11	-0.2
2,338,540	+		LRK54_RS10575	0.11	-0.4
2,338,540	+		LRK54_RS10575	0.11	+0.0
2,338,541	-		LRK54_RS10575	0.11	-0.2
2,338,553	+		LRK54_RS10575	0.12	+0.2
2,338,554	-		LRK54_RS10575	0.12	+0.4