Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS07715

Experiment: R2A with Manganese (II) chloride tetrahydrate 2.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Manganese (II) chloride tetrahydrate 2.5 mM
1,676,527	+		LRK54_RS07710	0.46	-0.3
1,676,613	+		LRK54_RS07710	0.53	-0.3
1,676,613	+		LRK54_RS07710	0.53	+0.6
1,676,613	+		LRK54_RS07710	0.53	-0.2
1,676,613	+		LRK54_RS07710	0.53	+0.1
1,676,613	+		LRK54_RS07710	0.53	+1.0
1,676,613	+		LRK54_RS07710	0.53	-0.8
1,676,613	+		LRK54_RS07710	0.53	-0.0
1,676,614	-		LRK54_RS07710	0.53	+0.1
1,676,614	-		LRK54_RS07710	0.53	+1.1
1,676,614	-		LRK54_RS07710	0.53	+0.7
1,676,614	-		LRK54_RS07710	0.53	-0.2
1,676,614	-		LRK54_RS07710	0.53	+0.0
1,676,614	-		LRK54_RS07710	0.53	+0.8
1,676,614	-		LRK54_RS07710	0.53	+0.7
1,676,614	-		LRK54_RS07710	0.53	-0.2
1,676,614	-		LRK54_RS07710	0.53	-0.1
1,676,614	-		LRK54_RS07710	0.53	+0.9
1,676,614	-		LRK54_RS07710	0.53	-1.2
1,676,698	+		LRK54_RS07710	0.59	-0.2
1,676,698	+		LRK54_RS07710	0.59	-0.7
1,676,698	+		LRK54_RS07710	0.59	-1.7
1,676,698	+		LRK54_RS07710	0.59	-0.4
1,676,698	+		LRK54_RS07710	0.59	-0.6
1,676,698	+		LRK54_RS07710	0.59	+0.5
1,676,698	+		LRK54_RS07710	0.59	+0.0
1,676,698	+		LRK54_RS07710	0.59	-0.9
1,676,698	+		LRK54_RS07710	0.59	+0.6
1,676,698	+		LRK54_RS07710	0.59	-1.0
1,676,698	+		LRK54_RS07710	0.59	-0.7
1,676,698	+		LRK54_RS07710	0.59	+0.3
1,676,698	+		LRK54_RS07710	0.59	-0.8
1,676,698	+		LRK54_RS07710	0.59	-0.3
1,676,698	+		LRK54_RS07710	0.59	-0.3
1,676,698	+		LRK54_RS07710	0.59	+0.3
1,676,698	+		LRK54_RS07710	0.59	-0.3
1,676,699	-		LRK54_RS07710	0.59	+0.5
1,676,699	-		LRK54_RS07710	0.59	+0.2
1,676,699	-		LRK54_RS07710	0.59	+0.7
1,676,699	-		LRK54_RS07710	0.59	-0.9
1,676,699	-		LRK54_RS07710	0.59	-0.2
1,676,699	-		LRK54_RS07710	0.59	-0.1
1,676,699	-		LRK54_RS07710	0.59	+0.4
1,676,699	-		LRK54_RS07710	0.59	-0.1
1,676,699	-		LRK54_RS07710	0.59	-0.8
1,676,699	-		LRK54_RS07710	0.59	-1.5
1,676,740	+		LRK54_RS07710	0.62	-0.2
1,676,740	+		LRK54_RS07710	0.62	-0.4
1,676,740	+		LRK54_RS07710	0.62	-0.7
1,676,740	+		LRK54_RS07710	0.62	-0.4
1,676,740	+		LRK54_RS07710	0.62	-0.2
1,676,740	+		LRK54_RS07710	0.62	-0.5
1,676,740	+		LRK54_RS07710	0.62	+0.2
1,676,740	+		LRK54_RS07710	0.62	-1.1
1,676,740	+		LRK54_RS07710	0.62	+0.3
1,676,740	+		LRK54_RS07710	0.62	-0.3
1,676,740	+		LRK54_RS07710	0.62	-0.5
1,676,741	-		LRK54_RS07710	0.63	-0.2
1,676,741	-		LRK54_RS07710	0.63	-0.1
1,676,741	-		LRK54_RS07710	0.63	-0.3
1,676,741	-		LRK54_RS07710	0.63	-0.6
1,676,741	-		LRK54_RS07710	0.63	-0.8
1,676,741	-		LRK54_RS07710	0.63	+0.5
1,676,741	-		LRK54_RS07710	0.63	+0.3
1,676,741	-		LRK54_RS07710	0.63	+0.5
1,676,741	-		LRK54_RS07710	0.63	-0.7
1,676,741	-		LRK54_RS07710	0.63	-0.7
1,676,741	-		LRK54_RS07710	0.63	+0.3
1,676,819	-		LRK54_RS07710	0.69	-0.2
1,676,819	-		LRK54_RS07710	0.69	-0.0
1,676,819	-		LRK54_RS07710	0.69	+0.0
1,676,866	+		LRK54_RS07710	0.72	-0.0
1,676,866	+		LRK54_RS07710	0.72	-0.8
1,676,867	-		LRK54_RS07710	0.72	-0.3
1,676,867	-		LRK54_RS07710	0.72	+0.6
1,676,914	+		LRK54_RS07710	0.76	+0.3
1,676,914	+		LRK54_RS07710	0.76	+0.1
1,676,930	-		LRK54_RS07710	0.77	-0.2
1,676,930	-		LRK54_RS07710	0.77	+0.5
1,677,151	+				-1.2
1,677,151	+				+0.1
1,677,151	+				-0.6
1,677,151	+				-0.3
1,677,151	+				-0.7
1,677,151	+				-0.1
1,677,152	-				-0.1
1,677,152	-				+0.2
1,677,152	-				+0.2
1,677,152	-				+0.2
1,677,157	+				-0.0
1,677,157	+				-0.6
1,677,157	+				-0.1
1,677,157	+				-1.3
1,677,157	+				+0.0
1,677,157	+				-0.8
1,677,157	+				-0.7
1,677,157	+				-0.4
1,677,157	+				+0.5
1,677,157	+				-0.5
1,677,157	+				-0.7
1,677,157	+				-0.3
1,677,157	+				+1.2
1,677,157	+				-0.8
1,677,157	+				-1.2
1,677,157	+				+0.4
1,677,157	+				-1.3
1,677,157	+				-0.2
1,677,157	+				-0.3
1,677,157	+				-1.5
1,677,157	+				+0.3
1,677,157	+				-0.0
1,677,157	+				-0.6
1,677,158	-				-0.2
1,677,158	-				-0.4
1,677,158	-				+0.2
1,677,158	-				-0.2
1,677,158	-				-0.6
1,677,158	-				+0.1
1,677,158	-				-0.0
1,677,158	-				-0.4
1,677,158	-				-0.2
1,677,158	-				+0.8
1,677,158	-				-1.6
1,677,158	-				-1.8
1,677,158	-				+0.9
1,677,158	-				+0.3
1,677,158	-				+0.2
1,677,166	+				-0.3
1,677,166	+				+0.0
1,677,166	+				-0.1
1,677,166	+				+1.3
1,677,167	-				-0.9
1,677,167	-				-0.1
1,677,167	-				+1.0
1,677,167	-				-0.3
1,677,169	+				-0.5
1,677,169	+				+0.2
1,677,169	+				-0.5
1,677,169	+				+0.1
1,677,169	+				+0.7
1,677,169	+				-0.6
1,677,170	-				-0.6
1,677,170	-				-0.1
1,677,170	-				+0.6
1,677,170	-				-0.7
1,677,170	-				+0.0
1,677,226	+				+0.6
1,677,226	+				-0.4
1,677,226	+				+0.0
1,677,226	+				-1.4
1,677,227	-				+0.0
1,677,227	-				+0.0
1,677,227	-				-0.9
1,677,227	-				-0.9
1,677,231	+				+0.5
1,677,231	+				-0.2
1,677,231	+				+1.9
1,677,231	+				+1.5
1,677,232	-				+0.3
1,677,232	-				-0.3
1,677,232	-				-0.3
1,677,232	-				-0.1
1,677,232	-				-0.3
1,677,232	-				+0.0
1,677,232	-				+1.2
1,677,307	+				+0.2
1,677,307	+				-1.1
1,677,308	-				-0.3
1,677,308	-				-0.5
1,677,308	-				-0.8
1,677,308	-				+0.2
1,677,308	-				-0.5
1,677,525	+		LRK54_RS07715	0.19	-1.6
1,677,525	+		LRK54_RS07715	0.19	+0.2
1,677,525	+		LRK54_RS07715	0.19	+0.1
1,677,526	-		LRK54_RS07715	0.19	-2.0
1,677,526	-		LRK54_RS07715	0.19	-0.5
1,677,546	+		LRK54_RS07715	0.21	-1.3
1,677,546	+		LRK54_RS07715	0.21	-1.9
1,677,546	+		LRK54_RS07715	0.21	-1.8
1,677,546	+		LRK54_RS07715	0.21	-1.1
1,677,546	+		LRK54_RS07715	0.21	-0.3
1,677,546	+		LRK54_RS07715	0.21	-1.6
1,677,546	+		LRK54_RS07715	0.21	-0.8
1,677,546	+		LRK54_RS07715	0.21	-1.0
1,677,546	+		LRK54_RS07715	0.21	-0.6
1,677,546	+		LRK54_RS07715	0.21	-1.0
1,677,546	+		LRK54_RS07715	0.21	+0.4
1,677,546	+		LRK54_RS07715	0.21	-1.8
1,677,546	+		LRK54_RS07715	0.21	-1.2
1,677,546	+		LRK54_RS07715	0.21	-0.1
1,677,546	+		LRK54_RS07715	0.21	-2.3
1,677,546	+		LRK54_RS07715	0.21	-1.2
1,677,547	-		LRK54_RS07715	0.21	-1.5
1,677,547	-		LRK54_RS07715	0.21	-1.7
1,677,547	-		LRK54_RS07715	0.21	-1.2
1,677,547	-		LRK54_RS07715	0.21	+0.0
1,677,547	-		LRK54_RS07715	0.21	-1.1
1,677,547	-		LRK54_RS07715	0.21	+0.1
1,677,547	-		LRK54_RS07715	0.21	-1.4
1,677,547	-		LRK54_RS07715	0.21	-0.3
1,677,547	-		LRK54_RS07715	0.21	-0.3
1,677,547	-		LRK54_RS07715	0.21	-2.6
1,677,547	-		LRK54_RS07715	0.21	-0.2
1,677,547	-		LRK54_RS07715	0.21	-1.0
1,677,547	-		LRK54_RS07715	0.21	+0.2
1,677,547	-		LRK54_RS07715	0.21	-0.6
1,677,547	-		LRK54_RS07715	0.21	-0.7
1,677,547	-		LRK54_RS07715	0.21	+0.3
1,677,547	-		LRK54_RS07715	0.21	-0.2
1,677,547	-		LRK54_RS07715	0.21	-1.2
1,677,547	-		LRK54_RS07715	0.21	-0.5
1,677,547	-		LRK54_RS07715	0.21	-1.2
1,677,810	+		LRK54_RS07715	0.45	-0.6
1,677,810	+		LRK54_RS07715	0.45	+0.4
1,677,810	+		LRK54_RS07715	0.45	-1.7
1,677,811	-		LRK54_RS07715	0.45	-1.2
1,677,811	-		LRK54_RS07715	0.45	-0.6
1,677,811	-		LRK54_RS07715	0.45	-1.2
1,677,811	-		LRK54_RS07715	0.45	+0.0
1,677,811	-		LRK54_RS07715	0.45	+0.7
1,677,811	-		LRK54_RS07715	0.45	+1.4
1,677,811	-		LRK54_RS07715	0.45	+0.4
1,677,835	-		LRK54_RS07715	0.48	+0.2
1,677,835	-		LRK54_RS07715	0.48	-0.3
1,677,924	+		LRK54_RS07715	0.56	+0.1
1,677,924	+		LRK54_RS07715	0.56	-1.0
1,677,933	+		LRK54_RS07715	0.57	-0.8
1,677,933	+		LRK54_RS07715	0.57	-0.1
1,677,934	-		LRK54_RS07715	0.57	-0.2
1,677,934	-		LRK54_RS07715	0.57	-0.2
1,677,934	-		LRK54_RS07715	0.57	-1.8
1,677,954	+		LRK54_RS07715	0.59	-0.3
1,677,954	+		LRK54_RS07715	0.59	-0.6
1,677,954	+		LRK54_RS07715	0.59	-0.7
1,677,955	-		LRK54_RS07715	0.59	+0.4
1,677,955	-		LRK54_RS07715	0.59	+0.4
1,677,996	+		LRK54_RS07715	0.63	-0.2
1,677,996	+		LRK54_RS07715	0.63	-0.5
1,677,996	+		LRK54_RS07715	0.63	-1.4
1,677,996	+		LRK54_RS07715	0.63	-0.4
1,677,996	+		LRK54_RS07715	0.63	-0.5
1,677,997	-		LRK54_RS07715	0.63	+0.9
1,677,997	-		LRK54_RS07715	0.63	-0.1
1,677,997	-		LRK54_RS07715	0.63	+1.3
1,677,997	-		LRK54_RS07715	0.63	-0.9
1,678,135	-		LRK54_RS07715	0.76	-0.8
1,678,135	-		LRK54_RS07715	0.76	-2.8
1,678,135	-		LRK54_RS07715	0.76	-1.0
1,678,391	+				-0.0
1,678,391	+				-1.5
1,678,391	+				-1.1
1,678,391	+				-0.2
1,678,392	-				-1.3
1,678,392	-				+0.3
1,678,392	-				-0.1
1,678,392	-				-0.0
1,678,392	-				-0.3
1,678,392	-				+3.0
1,678,392	-				-1.1
1,678,392	-				+0.5
1,678,392	-				-0.1
1,678,466	+				+1.7
1,678,466	+				+0.1
1,678,466	+				-0.3
1,678,466	+				+0.5
1,678,466	+				+0.2
1,678,466	+				-0.5
1,678,467	-				-1.2
1,678,467	-				-0.4
1,678,467	-				+0.6
1,678,467	-				+1.3
1,678,467	-				-2.2
1,678,467	-				+0.8
1,678,488	-				-1.4
1,678,496	+				+0.3
1,678,496	+				-0.0
1,678,496	+				+0.4
1,678,496	+				-0.2
1,678,496	+				+0.3
1,678,496	+				-1.9
1,678,496	+				+0.2
1,678,496	+				+0.1
1,678,496	+				-0.8
1,678,496	+				-0.3
1,678,496	+				-0.6
1,678,496	+				+0.7
1,678,496	+				-1.0
1,678,496	+				-0.6
1,678,496	+				+0.7
1,678,496	+				-0.8
1,678,496	+				-0.8
1,678,496	+				-0.1
1,678,496	+				+1.8
1,678,496	+				+0.2
1,678,496	+				+0.7
1,678,496	+				-0.4
1,678,496	+				+0.3
1,678,496	+				-2.2
1,678,496	+				-0.9
1,678,496	+				-0.0
1,678,496	+				-0.4
1,678,496	+				+0.3
1,678,497	-				-0.4
1,678,497	-				+0.3
1,678,497	-				-0.3
1,678,497	-				-0.3
1,678,497	-				-0.6
1,678,497	-				-0.4
1,678,497	-				-0.8
1,678,497	-				-0.3
1,678,497	-				-1.7
1,678,497	-				+0.3
1,678,497	-				+0.3
1,678,497	-				+0.0
1,678,547	+				-0.7
1,678,547	+				-0.3
1,678,547	+				-0.0
1,678,547	+				-0.1
1,678,548	-				+0.5
1,678,548	-				-2.7
1,678,562	+		LRK54_RS07720	0.11	+0.1
1,678,562	+		LRK54_RS07720	0.11	-0.0
1,678,562	+		LRK54_RS07720	0.11	+0.0
1,678,562	+		LRK54_RS07720	0.11	-0.7
1,678,562	+		LRK54_RS07720	0.11	+0.8
1,678,562	+		LRK54_RS07720	0.11	+0.4
1,678,562	+		LRK54_RS07720	0.11	+1.5
1,678,563	-		LRK54_RS07720	0.11	-0.4
1,678,580	+		LRK54_RS07720	0.12	-0.0
1,678,580	+		LRK54_RS07720	0.12	+0.2
1,678,580	+		LRK54_RS07720	0.12	-2.0
1,678,580	+		LRK54_RS07720	0.12	+0.0
1,678,580	+		LRK54_RS07720	0.12	-0.4
1,678,580	+		LRK54_RS07720	0.12	+0.1
1,678,580	+		LRK54_RS07720	0.12	-0.1
1,678,580	+		LRK54_RS07720	0.12	-0.9
1,678,580	+		LRK54_RS07720	0.12	-0.8
1,678,580	+		LRK54_RS07720	0.12	+0.1
1,678,581	-		LRK54_RS07720	0.12	-0.9
1,678,581	-		LRK54_RS07720	0.12	+1.3
1,678,581	-		LRK54_RS07720	0.12	-0.4
1,678,581	-		LRK54_RS07720	0.12	-1.0
1,678,581	-		LRK54_RS07720	0.12	-2.0
1,678,581	-		LRK54_RS07720	0.12	-1.2
1,678,581	-		LRK54_RS07720	0.12	-0.7
1,678,581	-		LRK54_RS07720	0.12	-0.6
1,678,581	-		LRK54_RS07720	0.12	-0.0
1,678,581	-		LRK54_RS07720	0.12	-0.1
1,678,581	-		LRK54_RS07720	0.12	-0.7
1,678,581	-		LRK54_RS07720	0.12	+0.4
1,678,581	-		LRK54_RS07720	0.12	-1.0
1,678,583	+		LRK54_RS07720	0.12	-0.2
1,678,584	-		LRK54_RS07720	0.12	-1.4
1,678,584	-		LRK54_RS07720	0.12	-0.5
1,678,584	-		LRK54_RS07720	0.12	-0.5
1,678,584	-		LRK54_RS07720	0.12	-0.2
1,678,598	+		LRK54_RS07720	0.13	-1.3
1,678,599	-		LRK54_RS07720	0.13	-0.9
1,678,599	-		LRK54_RS07720	0.13	+0.3
1,678,599	-		LRK54_RS07720	0.13	-0.1
1,678,599	-		LRK54_RS07720	0.13	-0.9
1,678,599	-		LRK54_RS07720	0.13	+0.1
1,678,599	-		LRK54_RS07720	0.13	-0.6
1,678,599	-		LRK54_RS07720	0.13	+0.2
1,678,737	-		LRK54_RS07720	0.22	+0.8
1,678,737	-		LRK54_RS07720	0.22	-0.2
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