Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS04090

Experiment: R2A with Manganese (II) chloride tetrahydrate 2.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Manganese (II) chloride tetrahydrate 2.5 mM
862,977	+		LRK54_RS04085	0.13	+2.9
862,977	+		LRK54_RS04085	0.13	+3.0
862,978	-		LRK54_RS04085	0.13	+2.8
863,509	+		LRK54_RS04085	0.65	+2.7
863,509	+		LRK54_RS04085	0.65	+3.5
863,509	+		LRK54_RS04085	0.65	+3.5
863,509	+		LRK54_RS04085	0.65	+2.7
863,509	+		LRK54_RS04085	0.65	+2.9
863,509	+		LRK54_RS04085	0.65	+2.5
863,509	+		LRK54_RS04085	0.65	+2.8
863,509	+		LRK54_RS04085	0.65	+2.6
863,509	+		LRK54_RS04085	0.65	+3.2
863,509	+		LRK54_RS04085	0.65	+3.3
863,509	+		LRK54_RS04085	0.65	+3.0
863,510	-		LRK54_RS04085	0.65	+2.5
863,510	-		LRK54_RS04085	0.65	+3.3
863,510	-		LRK54_RS04085	0.65	+3.2
863,510	-		LRK54_RS04085	0.65	+2.9
863,510	-		LRK54_RS04085	0.65	+2.9
863,510	-		LRK54_RS04085	0.65	+2.9
863,510	-		LRK54_RS04085	0.65	+3.5
863,510	-		LRK54_RS04085	0.65	+3.2
863,510	-		LRK54_RS04085	0.65	+2.9
863,510	-		LRK54_RS04085	0.65	+2.5
863,510	-		LRK54_RS04085	0.65	+2.8
863,510	-		LRK54_RS04085	0.65	+3.0
863,510	-		LRK54_RS04085	0.65	+3.1
863,510	-		LRK54_RS04085	0.65	+2.9
863,749	+		LRK54_RS04085	0.89	+2.5
863,749	+		LRK54_RS04085	0.89	+2.8
863,749	+		LRK54_RS04085	0.89	+2.3
863,749	+		LRK54_RS04085	0.89	+2.6
863,749	+		LRK54_RS04085	0.89	+2.8
863,749	+		LRK54_RS04085	0.89	+2.5
863,749	+		LRK54_RS04085	0.89	+2.7
863,749	+		LRK54_RS04085	0.89	+2.8
863,749	+		LRK54_RS04085	0.89	+2.2
863,749	+		LRK54_RS04085	0.89	+0.5
863,749	+		LRK54_RS04085	0.89	+3.0
863,749	+		LRK54_RS04085	0.89	+2.2
863,749	+		LRK54_RS04085	0.89	+2.8
863,749	+		LRK54_RS04085	0.89	+2.6
863,749	+		LRK54_RS04085	0.89	+2.5
863,749	+		LRK54_RS04085	0.89	+2.6
863,749	+		LRK54_RS04085	0.89	+2.4
863,749	+		LRK54_RS04085	0.89	+2.1
863,749	+		LRK54_RS04085	0.89	+2.6
863,749	+		LRK54_RS04085	0.89	+1.9
863,749	+		LRK54_RS04085	0.89	+2.3
863,749	+		LRK54_RS04085	0.89	+2.4
863,750	-		LRK54_RS04085	0.89	+2.6
863,750	-		LRK54_RS04085	0.89	+4.0
863,750	-		LRK54_RS04085	0.89	+2.6
863,750	-		LRK54_RS04085	0.89	+2.9
863,750	-		LRK54_RS04085	0.89	+2.9
863,750	-		LRK54_RS04085	0.89	+2.6
863,750	-		LRK54_RS04085	0.89	+2.2
863,750	-		LRK54_RS04085	0.89	+3.1
863,750	-		LRK54_RS04085	0.89	+2.8
863,750	-		LRK54_RS04085	0.89	+2.5
863,750	-		LRK54_RS04085	0.89	+1.5
863,750	-		LRK54_RS04085	0.89	+3.3
863,750	-		LRK54_RS04085	0.89	+2.8
863,750	-		LRK54_RS04085	0.89	+2.7
863,750	-		LRK54_RS04085	0.89	+2.9
863,750	-		LRK54_RS04085	0.89	+3.0
863,858	+				+2.7
863,858	+				+2.2
863,865	+				+0.6
863,865	+				+1.0
863,865	+				+0.8
863,865	+				+1.7
863,865	+				-0.3
863,865	+				+0.9
863,865	+				+1.1
863,866	-				-0.9
863,866	-				+1.3
863,866	-				-0.9
863,866	-				+0.6
863,866	-				-0.4
863,885	+				+0.7
863,885	+				+1.4
863,885	+				+1.3
863,885	+				+1.4
863,885	+				+1.3
863,885	+				+2.7
863,885	+				+0.3
863,885	+				+0.9
863,885	+				+0.5
863,885	+				+1.6
863,885	+				+1.0
863,885	+				-0.1
863,885	+				+1.2
863,886	-				+0.3
863,886	-				-0.0
863,886	-				+0.1
863,886	-				-0.6
863,886	-				+0.1
863,886	-				-0.4
863,886	-				-0.0
863,886	-				-0.0
863,886	-				-0.5
863,886	-				+0.3
863,886	-				+0.5
863,886	-				-0.4
863,886	-				+0.5
863,886	-				+0.3
863,900	+				+3.3
863,901	-				+0.4
863,954	+				-1.2
863,977	+		LRK54_RS04090	0.10	-0.2
863,977	+		LRK54_RS04090	0.10	+0.3
863,978	-		LRK54_RS04090	0.10	-0.2
863,978	-		LRK54_RS04090	0.10	-0.6
863,978	-		LRK54_RS04090	0.10	-1.9
863,978	-		LRK54_RS04090	0.10	-1.4
863,978	-		LRK54_RS04090	0.10	-2.7
863,978	-		LRK54_RS04090	0.10	+1.1
863,978	-		LRK54_RS04090	0.10	-0.4
863,978	-		LRK54_RS04090	0.10	+0.8
864,023	+		LRK54_RS04090	0.17	+2.3
864,023	+		LRK54_RS04090	0.17	-2.0
864,023	+		LRK54_RS04090	0.17	-0.1
864,023	+		LRK54_RS04090	0.17	-0.2
864,023	+		LRK54_RS04090	0.17	+0.9
864,023	+		LRK54_RS04090	0.17	-1.0
864,023	+		LRK54_RS04090	0.17	-1.2
864,023	+		LRK54_RS04090	0.17	+0.0
864,023	+		LRK54_RS04090	0.17	-2.1
864,023	+		LRK54_RS04090	0.17	-1.5
864,023	+		LRK54_RS04090	0.17	-0.9
864,023	+		LRK54_RS04090	0.17	-1.1
864,023	+		LRK54_RS04090	0.17	-1.1
864,023	+		LRK54_RS04090	0.17	-0.6
864,023	+		LRK54_RS04090	0.17	+0.2
864,023	+		LRK54_RS04090	0.17	-0.8
864,024	-		LRK54_RS04090	0.17	+0.3
864,024	-		LRK54_RS04090	0.17	+0.7
864,024	-		LRK54_RS04090	0.17	-0.5
864,024	-		LRK54_RS04090	0.17	-1.2
864,024	-		LRK54_RS04090	0.17	-0.4
864,024	-		LRK54_RS04090	0.17	-0.1
864,024	-		LRK54_RS04090	0.17	+0.6
864,024	-		LRK54_RS04090	0.17	+0.4
864,024	-		LRK54_RS04090	0.17	-2.3
864,024	-		LRK54_RS04090	0.17	-0.7
864,024	-		LRK54_RS04090	0.17	-1.3
864,024	-		LRK54_RS04090	0.17	-1.6
864,024	-		LRK54_RS04090	0.17	-0.9
864,024	-		LRK54_RS04090	0.17	-0.5
864,024	-		LRK54_RS04090	0.17	-1.3
864,024	-		LRK54_RS04090	0.17	-0.2
864,024	-		LRK54_RS04090	0.17	+0.2
864,024	-		LRK54_RS04090	0.17	-2.8
864,024	-		LRK54_RS04090	0.17	-1.1
864,024	-		LRK54_RS04090	0.17	-0.7
864,024	-		LRK54_RS04090	0.17	+0.1
864,314	+		LRK54_RS04090	0.56	+0.4
864,314	+		LRK54_RS04090	0.56	-1.1
864,314	+		LRK54_RS04090	0.56	-0.1
864,314	+		LRK54_RS04090	0.56	+1.3
864,314	+		LRK54_RS04090	0.56	+0.1
864,314	+		LRK54_RS04090	0.56	-0.2
864,314	+		LRK54_RS04090	0.56	+0.6
864,314	+		LRK54_RS04090	0.56	-0.6
864,314	+		LRK54_RS04090	0.56	-1.2
864,315	-		LRK54_RS04090	0.56	+0.4
864,315	-		LRK54_RS04090	0.56	-1.1
864,315	-		LRK54_RS04090	0.56	-0.6
864,315	-		LRK54_RS04090	0.56	-0.8
864,315	-		LRK54_RS04090	0.56	+0.2
864,315	-		LRK54_RS04090	0.56	-1.8
864,315	-		LRK54_RS04090	0.56	-0.5
864,476	+		LRK54_RS04090	0.78	+0.3
864,476	+		LRK54_RS04090	0.78	-0.6
864,476	+		LRK54_RS04090	0.78	-0.7
864,476	+		LRK54_RS04090	0.78	-1.3
864,476	+		LRK54_RS04090	0.78	-1.1
864,476	+		LRK54_RS04090	0.78	-0.2
864,476	+		LRK54_RS04090	0.78	+0.2
864,476	+		LRK54_RS04090	0.78	-1.8
864,476	+		LRK54_RS04090	0.78	-1.6
864,476	+		LRK54_RS04090	0.78	-0.9
864,476	+		LRK54_RS04090	0.78	-0.3
864,476	+		LRK54_RS04090	0.78	-1.6
864,476	+		LRK54_RS04090	0.78	-1.2
864,476	+		LRK54_RS04090	0.78	-1.5
864,476	+		LRK54_RS04090	0.78	-0.9
864,476	+		LRK54_RS04090	0.78	-0.4
864,476	+		LRK54_RS04090	0.78	+0.0
864,476	+		LRK54_RS04090	0.78	-0.5
864,476	+		LRK54_RS04090	0.78	-0.7
864,476	+		LRK54_RS04090	0.78	-2.3
864,476	+		LRK54_RS04090	0.78	-1.0
864,476	+		LRK54_RS04090	0.78	-0.2
864,476	+		LRK54_RS04090	0.78	-0.6
864,476	+		LRK54_RS04090	0.78	-0.2
864,476	+		LRK54_RS04090	0.78	-0.4
864,476	+		LRK54_RS04090	0.78	-1.4
864,476	+		LRK54_RS04090	0.78	-0.4
864,476	+		LRK54_RS04090	0.78	-0.7
864,476	+		LRK54_RS04090	0.78	-0.6
864,476	+		LRK54_RS04090	0.78	-2.1
864,476	+		LRK54_RS04090	0.78	-0.1
864,476	+		LRK54_RS04090	0.78	-0.8
864,476	+		LRK54_RS04090	0.78	-0.8
864,476	+		LRK54_RS04090	0.78	-0.4
864,476	+		LRK54_RS04090	0.78	+0.2
864,476	+		LRK54_RS04090	0.78	-1.7
864,476	+		LRK54_RS04090	0.78	-0.7
864,476	+		LRK54_RS04090	0.78	-0.3
864,476	+		LRK54_RS04090	0.78	-0.7
864,477	-		LRK54_RS04090	0.79	-0.6
864,477	-		LRK54_RS04090	0.79	-0.4
864,477	-		LRK54_RS04090	0.79	+1.0
864,477	-		LRK54_RS04090	0.79	-0.8
864,477	-		LRK54_RS04090	0.79	-0.1
864,477	-		LRK54_RS04090	0.79	-1.5
864,477	-		LRK54_RS04090	0.79	-1.8
864,477	-		LRK54_RS04090	0.79	-1.8
864,477	-		LRK54_RS04090	0.79	-1.6
864,477	-		LRK54_RS04090	0.79	-0.5
864,477	-		LRK54_RS04090	0.79	+0.0
864,477	-		LRK54_RS04090	0.79	+0.0
864,477	-		LRK54_RS04090	0.79	-0.4
864,477	-		LRK54_RS04090	0.79	-1.2
864,477	-		LRK54_RS04090	0.79	-0.7
864,477	-		LRK54_RS04090	0.79	-0.5
864,477	-		LRK54_RS04090	0.79	-1.6
864,477	-		LRK54_RS04090	0.79	-0.7
864,477	-		LRK54_RS04090	0.79	-1.1
864,477	-		LRK54_RS04090	0.79	-0.7
864,477	-		LRK54_RS04090	0.79	+0.1
864,477	-		LRK54_RS04090	0.79	-0.1
864,477	-		LRK54_RS04090	0.79	+0.8
864,477	-		LRK54_RS04090	0.79	+2.0
864,477	-		LRK54_RS04090	0.79	-0.2
864,477	-		LRK54_RS04090	0.79	-0.3
864,477	-		LRK54_RS04090	0.79	-0.8
864,477	-		LRK54_RS04090	0.79	+0.7
864,477	-		LRK54_RS04090	0.79	-1.1
864,477	-		LRK54_RS04090	0.79	-0.5
864,477	-		LRK54_RS04090	0.79	-0.8
864,477	-		LRK54_RS04090	0.79	-2.5
864,524	+		LRK54_RS04090	0.85	-0.2
864,524	+		LRK54_RS04090	0.85	+0.3
864,524	+		LRK54_RS04090	0.85	-1.1
864,525	-		LRK54_RS04090	0.85	-1.2
864,525	-		LRK54_RS04090	0.85	-0.6
864,625	+				-2.2
864,625	+				-0.8
864,625	+				-2.5
864,625	+				-1.7
864,625	+				-0.8
864,625	+				-2.7
864,625	+				-1.7
864,625	+				-1.4
864,625	+				-0.9
864,625	+				-0.5
864,625	+				-0.1
864,625	+				-0.9
864,625	+				+0.5
864,625	+				+0.0
864,625	+				-0.0
864,625	+				-1.9
864,625	+				-2.6
864,625	+				-2.3
864,625	+				-0.7
864,625	+				-0.3
864,625	+				-0.9
864,625	+				+0.5
864,626	-				-0.7
864,626	-				-0.6
864,626	-				-0.2
864,626	-				+0.1
864,626	-				-0.2
864,626	-				-1.5
864,626	-				-1.0
864,626	-				+0.2
864,626	-				-0.6
864,626	-				-0.7
864,626	-				-1.0
864,626	-				-1.5
864,626	-				+0.1
864,626	-				-1.8
864,626	-				-1.4
864,626	-				-0.9
864,626	-				+0.1
864,626	-				+0.1
864,626	-				+0.2
864,626	-				+0.6
864,626	-				-1.2
864,626	-				-1.2
864,626	-				-0.4
864,626	-				-0.4
864,626	-				-1.3
864,627	-				+0.1
864,640	+				-1.1
864,640	+				-0.6
864,640	+				-0.2
864,640	+				-0.2
864,640	+				-1.8
864,641	-				+0.5
864,641	-				+0.3
864,641	-				+0.3
864,641	-				-0.6
864,641	-				-1.1
864,641	-				-0.8
864,641	-				-0.5
864,641	-				+1.0
864,641	-				-1.4
864,641	-				-0.6
864,641	-				+0.1
864,641	-				+0.8
864,641	-				-1.5
864,658	+				+0.0
864,658	+				-2.7
864,658	+				-0.7
864,658	+				-1.2
864,658	+				-1.0
864,658	+				+1.2
864,659	-				-1.1
864,659	-				-1.5
864,659	-				-1.3
864,659	-				-0.7
864,659	-				+1.0
864,670	+				-1.6
864,671	-				-0.1
864,898	+		LRK54_RS04095	0.27	+1.1
864,898	+		LRK54_RS04095	0.27	-1.1
864,898	+		LRK54_RS04095	0.27	-0.4
864,898	+		LRK54_RS04095	0.27	-0.1
864,898	+		LRK54_RS04095	0.27	-0.7
864,898	+		LRK54_RS04095	0.27	+0.5
864,899	-		LRK54_RS04095	0.27	-0.5
864,899	-		LRK54_RS04095	0.27	-0.1
864,899	-		LRK54_RS04095	0.27	+0.0
864,899	-		LRK54_RS04095	0.27	-0.0
864,899	-		LRK54_RS04095	0.27	-0.2
864,899	-		LRK54_RS04095	0.27	-0.6
864,934	+		LRK54_RS04095	0.33	-0.0
864,934	+		LRK54_RS04095	0.33	-1.4
864,934	+		LRK54_RS04095	0.33	-1.1
864,934	+		LRK54_RS04095	0.33	+0.2
864,934	+		LRK54_RS04095	0.33	-0.9
864,934	+		LRK54_RS04095	0.33	-0.4
864,934	+		LRK54_RS04095	0.33	-0.6
864,934	+		LRK54_RS04095	0.33	-1.2
864,934	+		LRK54_RS04095	0.33	+0.2
864,935	-		LRK54_RS04095	0.33	+1.7
864,935	-		LRK54_RS04095	0.33	-1.3
864,935	-		LRK54_RS04095	0.33	+0.3
864,935	-		LRK54_RS04095	0.33	-0.5
864,935	-		LRK54_RS04095	0.33	-1.5
864,935	-		LRK54_RS04095	0.33	+0.3
864,935	-		LRK54_RS04095	0.33	-0.3
864,935	-		LRK54_RS04095	0.33	-0.3
864,935	-		LRK54_RS04095	0.33	+0.1
865,090	+		LRK54_RS04095	0.58	+0.3
865,090	+		LRK54_RS04095	0.58	-0.6
865,090	+		LRK54_RS04095	0.58	+0.5
865,090	+		LRK54_RS04095	0.58	-0.1
865,090	+		LRK54_RS04095	0.58	+0.1
865,090	+		LRK54_RS04095	0.58	-0.8
865,091	-		LRK54_RS04095	0.59	-0.0
865,091	-		LRK54_RS04095	0.59	-1.2
865,091	-		LRK54_RS04095	0.59	+0.3
865,177	-		LRK54_RS04095	0.73	-0.4
865,383	+				+0.9
865,383	+				-2.2
865,383	+				-0.6
865,383	+				-0.1
865,383	+				-0.2
865,383	+				-1.2
865,383	+				+1.3
865,383	+				-1.3
865,383	+				-0.5
865,383	+				+0.9
865,384	-				+0.5
865,384	-				-0.7
865,384	-				-0.9
865,384	-				-0.1
865,384	-				-0.2
865,384	-				-0.4
865,384	-				+1.1
865,384	-				-0.5
865,384	-				-0.7
865,384	-				-0.4
865,384	-				+0.2
865,384	-				-0.1