Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS02530

Experiment: R2A with Manganese (II) chloride tetrahydrate 2.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLRK54_RS02525 and LRK54_RS02530 are separated by 113 nucleotidesLRK54_RS02530 and LRK54_RS02535 are separated by 289 nucleotidesLRK54_RS02535 and LRK54_RS02540 are separated by 151 nucleotides LRK54_RS02525: LRK54_RS02525 - DNA repair protein RadA, at 546,037 to 547,422 _RS02525 LRK54_RS02530: LRK54_RS02530 - replicative DNA helicase, at 547,536 to 548,930 _RS02530 LRK54_RS02535: LRK54_RS02535 - 50S ribosomal protein L9, at 549,220 to 549,669 _RS02535 LRK54_RS02540: LRK54_RS02540 - 30S ribosomal protein S18, at 549,821 to 550,051 _RS02540 Position (kb) 547 548 549Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 546.692 kb on + strand, within LRK54_RS02525at 546.692 kb on + strand, within LRK54_RS02525at 546.692 kb on + strand, within LRK54_RS02525at 546.692 kb on + strand, within LRK54_RS02525at 546.692 kb on + strand, within LRK54_RS02525at 546.692 kb on + strand, within LRK54_RS02525at 546.692 kb on + strand, within LRK54_RS02525at 546.693 kb on - strand, within LRK54_RS02525at 546.693 kb on - strand, within LRK54_RS02525at 546.693 kb on - strand, within LRK54_RS02525at 546.693 kb on - strand, within LRK54_RS02525at 546.693 kb on - strand, within LRK54_RS02525at 546.693 kb on - strand, within LRK54_RS02525at 546.693 kb on - strand, within LRK54_RS02525at 546.693 kb on - strand, within LRK54_RS02525at 546.693 kb on - strand, within LRK54_RS02525at 546.797 kb on + strand, within LRK54_RS02525at 546.797 kb on + strand, within LRK54_RS02525at 546.797 kb on + strand, within LRK54_RS02525at 546.797 kb on + strand, within LRK54_RS02525at 546.797 kb on + strand, within LRK54_RS02525at 546.798 kb on - strand, within LRK54_RS02525at 546.798 kb on - strand, within LRK54_RS02525at 546.863 kb on + strand, within LRK54_RS02525at 547.037 kb on + strand, within LRK54_RS02525at 547.037 kb on + strand, within LRK54_RS02525at 547.037 kb on + strand, within LRK54_RS02525at 547.037 kb on + strand, within LRK54_RS02525at 547.037 kb on + strand, within LRK54_RS02525at 547.037 kb on + strand, within LRK54_RS02525at 547.037 kb on + strand, within LRK54_RS02525at 547.037 kb on + strand, within LRK54_RS02525at 547.037 kb on + strand, within LRK54_RS02525at 547.037 kb on + strand, within LRK54_RS02525at 547.037 kb on + strand, within LRK54_RS02525at 547.037 kb on + strand, within LRK54_RS02525at 547.037 kb on + strand, within LRK54_RS02525at 547.037 kb on + strand, within LRK54_RS02525at 547.037 kb on + strand, within LRK54_RS02525at 547.037 kb on + strand, within LRK54_RS02525at 547.037 kb on + strand, within LRK54_RS02525at 547.037 kb on + strand, within LRK54_RS02525at 547.037 kb on + strand, within LRK54_RS02525at 547.037 kb on + strand, within LRK54_RS02525at 547.037 kb on + strand, within LRK54_RS02525at 547.037 kb on + strand, within LRK54_RS02525at 547.038 kb on - strand, within LRK54_RS02525at 547.038 kb on - strand, within LRK54_RS02525at 547.038 kb on - strand, within LRK54_RS02525at 547.038 kb on - strand, within LRK54_RS02525at 547.038 kb on - strand, within LRK54_RS02525at 547.038 kb on - strand, within LRK54_RS02525at 547.038 kb on - strand, within LRK54_RS02525at 547.038 kb on - strand, within LRK54_RS02525at 547.038 kb on - strand, within LRK54_RS02525at 547.038 kb on - strand, within LRK54_RS02525at 547.038 kb on - strand, within LRK54_RS02525at 547.038 kb on - strand, within LRK54_RS02525at 547.038 kb on - strand, within LRK54_RS02525at 547.038 kb on - strand, within LRK54_RS02525at 547.038 kb on - strand, within LRK54_RS02525at 547.038 kb on - strand, within LRK54_RS02525at 547.038 kb on - strand, within LRK54_RS02525at 547.038 kb on - strand, within LRK54_RS02525at 547.038 kb on - strand, within LRK54_RS02525at 547.038 kb on - strand, within LRK54_RS02525at 547.259 kb on + strand, within LRK54_RS02525at 547.259 kb on + strand, within LRK54_RS02525at 547.259 kb on + strand, within LRK54_RS02525at 547.259 kb on + strand, within LRK54_RS02525at 547.259 kb on + strand, within LRK54_RS02525at 547.260 kb on - strand, within LRK54_RS02525at 547.260 kb on - strand, within LRK54_RS02525at 547.260 kb on - strand, within LRK54_RS02525at 547.260 kb on - strand, within LRK54_RS02525at 547.260 kb on - strand, within LRK54_RS02525at 547.260 kb on - strand, within LRK54_RS02525at 547.260 kb on - strand, within LRK54_RS02525at 547.400 kb on + strandat 547.400 kb on + strandat 547.400 kb on + strandat 547.400 kb on + strandat 547.400 kb on + strandat 547.400 kb on + strandat 547.400 kb on + strandat 547.400 kb on + strandat 547.400 kb on + strandat 547.400 kb on + strandat 547.400 kb on + strandat 547.400 kb on + strandat 547.400 kb on + strandat 547.400 kb on + strandat 547.401 kb on - strandat 547.401 kb on - strandat 547.401 kb on - strandat 547.401 kb on - strandat 547.401 kb on - strandat 547.401 kb on - strandat 547.401 kb on - strandat 547.401 kb on - strandat 547.401 kb on - strandat 547.489 kb on + strandat 547.489 kb on + strandat 547.489 kb on + strandat 547.489 kb on + strandat 547.489 kb on + strandat 547.489 kb on + strandat 547.489 kb on + strandat 547.489 kb on + strandat 547.489 kb on + strandat 547.490 kb on - strandat 547.490 kb on - strandat 547.490 kb on - strandat 547.490 kb on - strandat 547.490 kb on - strandat 547.490 kb on - strandat 547.490 kb on - strandat 547.490 kb on - strandat 547.490 kb on - strandat 547.490 kb on - strandat 547.490 kb on - strandat 547.490 kb on - strandat 547.490 kb on - strandat 547.490 kb on - strandat 547.490 kb on - strandat 547.490 kb on - strandat 547.570 kb on + strandat 547.570 kb on + strandat 547.570 kb on + strandat 547.570 kb on + strandat 547.570 kb on + strandat 547.570 kb on + strandat 547.570 kb on + strandat 547.570 kb on + strandat 547.571 kb on - strandat 547.571 kb on - strandat 547.571 kb on - strandat 547.571 kb on - strandat 547.571 kb on - strandat 547.571 kb on - strandat 547.571 kb on - strandat 547.571 kb on - strandat 548.937 kb on - strandat 548.937 kb on - strandat 548.937 kb on - strandat 548.950 kb on - strandat 549.034 kb on + strandat 549.034 kb on + strandat 549.034 kb on + strandat 549.035 kb on - strandat 549.035 kb on - strandat 549.035 kb on - strandat 549.035 kb on - strandat 549.035 kb on - strandat 549.035 kb on - strandat 549.035 kb on - strandat 549.035 kb on - strandat 549.035 kb on - strandat 549.035 kb on - strandat 549.051 kb on + strandat 549.051 kb on + strandat 549.052 kb on - strandat 549.072 kb on + strandat 549.072 kb on + strandat 549.072 kb on + strandat 549.072 kb on + strandat 549.072 kb on + strandat 549.072 kb on + strandat 549.073 kb on - strandat 549.073 kb on - strandat 549.073 kb on - strandat 549.073 kb on - strandat 549.073 kb on - strandat 549.148 kb on + strandat 549.148 kb on + strandat 549.148 kb on + strandat 549.149 kb on - strandat 549.149 kb on - strandat 549.149 kb on - strandat 549.214 kb on + strandat 549.214 kb on + strandat 549.214 kb on + strandat 549.215 kb on - strandat 549.215 kb on - strandat 549.215 kb on - strandat 549.215 kb on - strandat 549.215 kb on - strandat 549.221 kb on + strandat 549.221 kb on + strandat 549.221 kb on + strandat 549.221 kb on + strandat 549.221 kb on + strandat 549.221 kb on + strandat 549.221 kb on + strandat 549.221 kb on + strandat 549.221 kb on + strandat 549.221 kb on + strandat 549.221 kb on + strandat 549.221 kb on + strandat 549.221 kb on + strandat 549.221 kb on + strandat 549.221 kb on + strandat 549.221 kb on + strandat 549.221 kb on + strandat 549.221 kb on + strandat 549.221 kb on + strandat 549.221 kb on + strandat 549.221 kb on + strandat 549.221 kb on + strandat 549.222 kb on - strandat 549.222 kb on - strandat 549.222 kb on - strandat 549.222 kb on - strandat 549.222 kb on - strandat 549.222 kb on - strandat 549.222 kb on - strandat 549.222 kb on - strandat 549.222 kb on - strandat 549.222 kb on - strandat 549.222 kb on - strandat 549.222 kb on - strandat 549.222 kb on - strandat 549.222 kb on - strandat 549.222 kb on - strandat 549.222 kb on - strandat 549.222 kb on - strandat 549.222 kb on - strandat 549.222 kb on - strandat 549.222 kb on - strandat 549.222 kb on - strandat 549.222 kb on - strandat 549.222 kb on - strandat 549.222 kb on - strandat 549.222 kb on - strandat 549.222 kb on - strandat 549.222 kb on - strandat 549.222 kb on - strandat 549.222 kb on - strandat 549.222 kb on - strandat 549.222 kb on - strandat 549.222 kb on - strandat 549.290 kb on + strand, within LRK54_RS02535at 549.290 kb on + strand, within LRK54_RS02535at 549.290 kb on + strand, within LRK54_RS02535at 549.290 kb on + strand, within LRK54_RS02535at 549.290 kb on + strand, within LRK54_RS02535at 549.290 kb on + strand, within LRK54_RS02535at 549.291 kb on - strandat 549.291 kb on - strand, within LRK54_RS02535at 549.291 kb on - strand, within LRK54_RS02535at 549.291 kb on - strand, within LRK54_RS02535at 549.327 kb on + strand, within LRK54_RS02535at 549.328 kb on - strand, within LRK54_RS02535at 549.328 kb on - strand, within LRK54_RS02535at 549.328 kb on - strand, within LRK54_RS02535at 549.328 kb on - strand, within LRK54_RS02535at 549.509 kb on + strand, within LRK54_RS02535at 549.509 kb on + strand, within LRK54_RS02535at 549.509 kb on + strand, within LRK54_RS02535at 549.509 kb on + strand, within LRK54_RS02535at 549.510 kb on - strand, within LRK54_RS02535at 549.510 kb on - strand, within LRK54_RS02535at 549.510 kb on - strand, within LRK54_RS02535at 549.510 kb on - strand, within LRK54_RS02535at 549.510 kb on - strand, within LRK54_RS02535at 549.510 kb on - strand, within LRK54_RS02535at 549.584 kb on + strand, within LRK54_RS02535at 549.584 kb on + strand, within LRK54_RS02535at 549.584 kb on + strand, within LRK54_RS02535at 549.584 kb on + strand, within LRK54_RS02535at 549.584 kb on + strand, within LRK54_RS02535at 549.584 kb on + strand, within LRK54_RS02535at 549.584 kb on + strand, within LRK54_RS02535at 549.584 kb on + strand, within LRK54_RS02535at 549.584 kb on + strand, within LRK54_RS02535at 549.584 kb on + strand, within LRK54_RS02535at 549.584 kb on + strand, within LRK54_RS02535at 549.584 kb on + strand, within LRK54_RS02535at 549.585 kb on - strand, within LRK54_RS02535at 549.585 kb on - strand, within LRK54_RS02535at 549.585 kb on - strand, within LRK54_RS02535at 549.585 kb on - strand, within LRK54_RS02535at 549.585 kb on - strand, within LRK54_RS02535at 549.585 kb on - strand, within LRK54_RS02535at 549.585 kb on - strand, within LRK54_RS02535at 549.585 kb on - strand, within LRK54_RS02535at 549.631 kb on - strandat 549.790 kb on + strandat 549.790 kb on + strandat 549.804 kb on + strandat 549.804 kb on + strandat 549.804 kb on + strandat 549.844 kb on - strand, within LRK54_RS02540

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Manganese (II) chloride tetrahydrate 2.5 mM
remove
546,692 + LRK54_RS02525 0.47 -0.3
546,692 + LRK54_RS02525 0.47 +0.7
546,692 + LRK54_RS02525 0.47 -0.6
546,692 + LRK54_RS02525 0.47 +0.7
546,692 + LRK54_RS02525 0.47 -1.6
546,692 + LRK54_RS02525 0.47 +0.5
546,692 + LRK54_RS02525 0.47 +0.9
546,693 - LRK54_RS02525 0.47 +1.4
546,693 - LRK54_RS02525 0.47 -0.5
546,693 - LRK54_RS02525 0.47 +1.1
546,693 - LRK54_RS02525 0.47 +0.7
546,693 - LRK54_RS02525 0.47 -0.4
546,693 - LRK54_RS02525 0.47 +2.2
546,693 - LRK54_RS02525 0.47 +0.4
546,693 - LRK54_RS02525 0.47 -0.9
546,693 - LRK54_RS02525 0.47 -0.1
546,797 + LRK54_RS02525 0.55 -0.6
546,797 + LRK54_RS02525 0.55 +1.1
546,797 + LRK54_RS02525 0.55 +0.5
546,797 + LRK54_RS02525 0.55 -2.8
546,797 + LRK54_RS02525 0.55 +0.8
546,798 - LRK54_RS02525 0.55 -1.2
546,798 - LRK54_RS02525 0.55 +0.1
546,863 + LRK54_RS02525 0.60 -0.4
547,037 + LRK54_RS02525 0.72 -0.5
547,037 + LRK54_RS02525 0.72 -0.7
547,037 + LRK54_RS02525 0.72 -1.0
547,037 + LRK54_RS02525 0.72 -0.5
547,037 + LRK54_RS02525 0.72 +0.9
547,037 + LRK54_RS02525 0.72 -1.6
547,037 + LRK54_RS02525 0.72 -0.4
547,037 + LRK54_RS02525 0.72 -0.2
547,037 + LRK54_RS02525 0.72 +0.8
547,037 + LRK54_RS02525 0.72 -1.9
547,037 + LRK54_RS02525 0.72 -0.9
547,037 + LRK54_RS02525 0.72 +0.1
547,037 + LRK54_RS02525 0.72 -1.4
547,037 + LRK54_RS02525 0.72 -0.2
547,037 + LRK54_RS02525 0.72 +0.6
547,037 + LRK54_RS02525 0.72 -0.2
547,037 + LRK54_RS02525 0.72 -0.4
547,037 + LRK54_RS02525 0.72 +0.3
547,037 + LRK54_RS02525 0.72 -0.4
547,037 + LRK54_RS02525 0.72 -1.1
547,037 + LRK54_RS02525 0.72 -0.4
547,037 + LRK54_RS02525 0.72 -0.3
547,038 - LRK54_RS02525 0.72 +0.1
547,038 - LRK54_RS02525 0.72 -0.6
547,038 - LRK54_RS02525 0.72 +0.1
547,038 - LRK54_RS02525 0.72 -1.5
547,038 - LRK54_RS02525 0.72 -0.6
547,038 - LRK54_RS02525 0.72 -1.3
547,038 - LRK54_RS02525 0.72 +0.2
547,038 - LRK54_RS02525 0.72 -0.1
547,038 - LRK54_RS02525 0.72 -0.7
547,038 - LRK54_RS02525 0.72 -0.0
547,038 - LRK54_RS02525 0.72 +0.3
547,038 - LRK54_RS02525 0.72 +1.1
547,038 - LRK54_RS02525 0.72 -0.2
547,038 - LRK54_RS02525 0.72 +0.3
547,038 - LRK54_RS02525 0.72 -1.5
547,038 - LRK54_RS02525 0.72 +1.4
547,038 - LRK54_RS02525 0.72 +0.4
547,038 - LRK54_RS02525 0.72 -0.6
547,038 - LRK54_RS02525 0.72 +0.1
547,038 - LRK54_RS02525 0.72 +0.7
547,259 + LRK54_RS02525 0.88 -0.2
547,259 + LRK54_RS02525 0.88 -2.3
547,259 + LRK54_RS02525 0.88 -0.2
547,259 + LRK54_RS02525 0.88 +0.6
547,259 + LRK54_RS02525 0.88 -0.3
547,260 - LRK54_RS02525 0.88 +0.6
547,260 - LRK54_RS02525 0.88 +0.4
547,260 - LRK54_RS02525 0.88 -2.4
547,260 - LRK54_RS02525 0.88 -0.8
547,260 - LRK54_RS02525 0.88 -0.2
547,260 - LRK54_RS02525 0.88 -0.0
547,260 - LRK54_RS02525 0.88 -1.2
547,400 + -0.1
547,400 + -0.5
547,400 + -0.8
547,400 + +0.0
547,400 + -0.4
547,400 + -1.1
547,400 + +1.3
547,400 + -0.0
547,400 + -0.2
547,400 + +0.0
547,400 + -1.1
547,400 + -0.8
547,400 + -0.7
547,400 + -0.3
547,401 - -0.8
547,401 - +0.9
547,401 - -1.5
547,401 - +0.4
547,401 - -0.4
547,401 - -0.6
547,401 - -0.4
547,401 - -0.7
547,401 - +0.2
547,489 + +2.5
547,489 + +0.2
547,489 + +0.5
547,489 + +0.5
547,489 + -0.3
547,489 + +0.1
547,489 + -0.3
547,489 + +0.5
547,489 + +0.3
547,490 - +2.1
547,490 - +0.1
547,490 - -0.4
547,490 - -0.6
547,490 - -1.1
547,490 - +0.1
547,490 - +0.2
547,490 - +0.6
547,490 - +0.6
547,490 - -0.6
547,490 - -0.7
547,490 - -0.6
547,490 - +0.1
547,490 - -0.5
547,490 - -0.5
547,490 - -1.1
547,570 + -0.2
547,570 + -0.1
547,570 + -0.3
547,570 + -0.4
547,570 + +0.3
547,570 + -0.3
547,570 + -1.1
547,570 + -0.3
547,571 - -1.1
547,571 - -0.7
547,571 - -0.3
547,571 - +0.9
547,571 - -0.8
547,571 - +0.2
547,571 - +0.6
547,571 - -0.6
548,937 - +0.1
548,937 - -1.1
548,937 - +1.4
548,950 - -1.0
549,034 + +1.4
549,034 + -0.1
549,034 + -0.7
549,035 - -1.1
549,035 - -1.9
549,035 - -0.2
549,035 - -1.3
549,035 - +0.4
549,035 - +0.1
549,035 - -0.7
549,035 - +0.2
549,035 - -0.2
549,035 - +0.5
549,051 + +0.6
549,051 + +0.3
549,052 - -0.8
549,072 + +0.1
549,072 + -0.1
549,072 + +0.3
549,072 + -0.6
549,072 + -2.4
549,072 + -2.1
549,073 - -0.7
549,073 - -0.2
549,073 - +0.7
549,073 - -0.5
549,073 - -0.5
549,148 + +0.3
549,148 + -0.7
549,148 + -1.5
549,149 - -0.2
549,149 - -0.4
549,149 - +0.7
549,214 + -0.6
549,214 + +1.3
549,214 + +0.2
549,215 - +1.6
549,215 - +0.8
549,215 - +1.7
549,215 - -0.3
549,215 - +0.3
549,221 + +1.1
549,221 + +0.9
549,221 + +0.3
549,221 + -0.1
549,221 + +1.7
549,221 + +0.9
549,221 + +0.1
549,221 + +0.2
549,221 + +0.5
549,221 + +0.2
549,221 + +0.1
549,221 + +0.7
549,221 + +0.1
549,221 + -1.3
549,221 + +0.3
549,221 + +0.6
549,221 + +0.9
549,221 + +0.9
549,221 + +0.6
549,221 + +0.1
549,221 + +0.6
549,221 + +0.4
549,222 - +0.4
549,222 - +0.6
549,222 - +0.4
549,222 - +0.2
549,222 - +1.0
549,222 - -0.1
549,222 - -0.8
549,222 - +1.1
549,222 - -0.8
549,222 - +0.1
549,222 - +0.3
549,222 - +1.2
549,222 - +0.4
549,222 - +0.9
549,222 - -1.2
549,222 - -0.7
549,222 - +0.8
549,222 - -0.3
549,222 - +0.4
549,222 - -0.9
549,222 - +0.1
549,222 - -0.8
549,222 - -1.0
549,222 - -0.6
549,222 - +0.1
549,222 - +0.8
549,222 - -0.2
549,222 - +0.4
549,222 - +0.4
549,222 - +1.0
549,222 - +0.5
549,222 - -1.0
549,290 + LRK54_RS02535 0.16 +0.1
549,290 + LRK54_RS02535 0.16 +1.5
549,290 + LRK54_RS02535 0.16 -0.5
549,290 + LRK54_RS02535 0.16 +0.1
549,290 + LRK54_RS02535 0.16 -0.4
549,290 + LRK54_RS02535 0.16 -0.0
549,291 - +3.0
549,291 - LRK54_RS02535 0.16 -0.7
549,291 - LRK54_RS02535 0.16 +0.6
549,291 - LRK54_RS02535 0.16 -0.5
549,327 + LRK54_RS02535 0.24 -1.2
549,328 - LRK54_RS02535 0.24 -0.3
549,328 - LRK54_RS02535 0.24 +0.5
549,328 - LRK54_RS02535 0.24 -1.7
549,328 - LRK54_RS02535 0.24 +1.0
549,509 + LRK54_RS02535 0.64 -0.5
549,509 + LRK54_RS02535 0.64 +1.1
549,509 + LRK54_RS02535 0.64 -0.9
549,509 + LRK54_RS02535 0.64 -0.1
549,510 - LRK54_RS02535 0.64 -0.6
549,510 - LRK54_RS02535 0.64 -0.8
549,510 - LRK54_RS02535 0.64 -0.4
549,510 - LRK54_RS02535 0.64 +0.6
549,510 - LRK54_RS02535 0.64 +1.0
549,510 - LRK54_RS02535 0.64 -0.3
549,584 + LRK54_RS02535 0.81 +0.9
549,584 + LRK54_RS02535 0.81 -0.4
549,584 + LRK54_RS02535 0.81 +1.3
549,584 + LRK54_RS02535 0.81 -0.4
549,584 + LRK54_RS02535 0.81 -0.1
549,584 + LRK54_RS02535 0.81 -0.2
549,584 + LRK54_RS02535 0.81 -0.2
549,584 + LRK54_RS02535 0.81 +0.2
549,584 + LRK54_RS02535 0.81 +0.8
549,584 + LRK54_RS02535 0.81 -1.0
549,584 + LRK54_RS02535 0.81 +0.5
549,584 + LRK54_RS02535 0.81 +0.6
549,585 - LRK54_RS02535 0.81 +0.4
549,585 - LRK54_RS02535 0.81 -0.2
549,585 - LRK54_RS02535 0.81 +0.6
549,585 - LRK54_RS02535 0.81 +0.2
549,585 - LRK54_RS02535 0.81 +0.2
549,585 - LRK54_RS02535 0.81 -0.1
549,585 - LRK54_RS02535 0.81 +0.5
549,585 - LRK54_RS02535 0.81 +0.5
549,631 - -0.5
549,790 + +1.0
549,790 + -0.2
549,804 + -1.5
549,804 + -1.1
549,804 + -0.5
549,844 - LRK54_RS02540 0.10 -1.4

Or see this region's nucleotide sequence