Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS02090

Experiment: R2A with Manganese (II) chloride tetrahydrate 2.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Manganese (II) chloride tetrahydrate 2.5 mM
440,662	+				+1.6
440,663	-				+0.9
440,663	-				-0.7
441,542	+				-0.6
441,542	+				+0.3
441,542	+				+0.1
441,542	+				+2.1
441,542	+				+1.5
441,542	+				+0.4
441,543	-				-0.2
441,543	-				-0.2
441,543	-				+0.7
441,543	-				-0.5
441,543	-				+1.6
441,543	-				+0.8
441,675	+				-0.9
441,676	-				-1.6
441,720	+				-0.3
441,720	+				-0.7
441,720	+				-0.1
441,720	+				+0.4
441,720	+				+0.6
441,720	+				-3.1
441,721	-				+0.8
441,721	-				+0.7
441,721	-				-0.8
441,721	-				-2.3
441,721	-				-0.3
441,721	-				-1.3
441,721	-				-1.9
441,721	-				-0.9
441,721	-				-0.4
441,721	-				-1.0
441,721	-				+1.2
441,721	-				+0.7
441,939	+				-2.0
441,939	+				+0.4
441,939	+				-1.1
441,940	-				-2.0
441,940	-				-0.5
441,940	-				+1.5
441,940	-				-0.8
441,940	-				-1.3
441,940	-				-1.1
441,940	-				-1.7
441,940	-				-3.0
442,128	-		LRK54_RS02090	0.10	-0.5
442,128	-		LRK54_RS02090	0.10	-1.7
442,348	+		LRK54_RS02090	0.15	-0.4
442,348	+		LRK54_RS02090	0.15	-1.2
442,348	+		LRK54_RS02090	0.15	-0.5
442,349	-		LRK54_RS02090	0.15	-2.8
442,350	+		LRK54_RS02090	0.15	-2.7
442,350	+		LRK54_RS02090	0.15	-1.2
442,350	+		LRK54_RS02090	0.15	-1.4
442,350	+		LRK54_RS02090	0.15	-0.5
442,350	+		LRK54_RS02090	0.15	+0.2
442,350	+		LRK54_RS02090	0.15	-2.6
442,350	+		LRK54_RS02090	0.15	+0.3
442,350	+		LRK54_RS02090	0.15	-0.5
442,350	+		LRK54_RS02090	0.15	-2.7
442,351	-		LRK54_RS02090	0.15	+0.4
442,351	-		LRK54_RS02090	0.15	-1.1
442,351	-		LRK54_RS02090	0.15	-2.0
442,351	-		LRK54_RS02090	0.15	-0.8
442,351	-		LRK54_RS02090	0.15	-1.0
442,351	-		LRK54_RS02090	0.15	-1.7
442,351	-		LRK54_RS02090	0.15	+1.2
442,351	-		LRK54_RS02090	0.15	-0.3
442,497	+		LRK54_RS02090	0.18	-1.1
442,497	+		LRK54_RS02090	0.18	-0.7
442,498	-		LRK54_RS02090	0.18	-2.5
442,498	-		LRK54_RS02090	0.18	-2.5
442,498	-		LRK54_RS02090	0.18	-1.0
442,498	-		LRK54_RS02090	0.18	-3.3
442,524	+		LRK54_RS02090	0.18	-0.5
442,524	+		LRK54_RS02090	0.18	-0.8
442,524	+		LRK54_RS02090	0.18	-0.5
442,524	+		LRK54_RS02090	0.18	-1.8
442,524	+		LRK54_RS02090	0.18	-1.5
442,525	-		LRK54_RS02090	0.18	-0.5
442,525	-		LRK54_RS02090	0.18	-0.6
442,525	-		LRK54_RS02090	0.18	-0.6
442,525	-		LRK54_RS02090	0.18	-0.9
442,525	-		LRK54_RS02090	0.18	-2.0
442,525	-		LRK54_RS02090	0.18	-0.3
442,548	+		LRK54_RS02090	0.19	-0.5
442,548	+		LRK54_RS02090	0.19	+0.3
442,548	+		LRK54_RS02090	0.19	-0.2
442,548	+		LRK54_RS02090	0.19	-2.1
442,549	-		LRK54_RS02090	0.19	-0.5
442,549	-		LRK54_RS02090	0.19	-1.1
442,549	-		LRK54_RS02090	0.19	-0.5
442,549	-		LRK54_RS02090	0.19	-2.1
442,605	+		LRK54_RS02090	0.20	-1.9
442,606	-		LRK54_RS02090	0.20	-2.1
442,806	+		LRK54_RS02090	0.24	-0.6
442,806	+		LRK54_RS02090	0.24	-0.8
442,806	+		LRK54_RS02090	0.24	-0.3
442,807	-		LRK54_RS02090	0.24	-1.7
442,807	-		LRK54_RS02090	0.24	+0.1
442,976	-		LRK54_RS02090	0.28	+1.2
443,142	+		LRK54_RS02090	0.31	+1.6
443,142	+		LRK54_RS02090	0.31	-0.7
443,142	+		LRK54_RS02090	0.31	-1.1
443,142	+		LRK54_RS02090	0.31	-1.6
443,142	+		LRK54_RS02090	0.31	+0.2
443,142	+		LRK54_RS02090	0.31	-1.8
443,142	+		LRK54_RS02090	0.31	+0.1
443,142	+		LRK54_RS02090	0.31	-1.7
443,142	+		LRK54_RS02090	0.31	-1.7
443,142	+		LRK54_RS02090	0.31	-1.1
443,142	+		LRK54_RS02090	0.31	-1.9
443,142	+		LRK54_RS02090	0.31	-1.1
443,142	+		LRK54_RS02090	0.31	-1.4
443,142	+		LRK54_RS02090	0.31	-0.9
443,142	+		LRK54_RS02090	0.31	-0.9
443,142	+		LRK54_RS02090	0.31	-0.9
443,142	+		LRK54_RS02090	0.31	-0.3
443,142	+		LRK54_RS02090	0.31	-1.5
443,142	+		LRK54_RS02090	0.31	-1.7
443,142	+		LRK54_RS02090	0.31	-0.4
443,142	+		LRK54_RS02090	0.31	-0.4
443,143	-		LRK54_RS02090	0.31	-2.1
443,143	-		LRK54_RS02090	0.31	-0.0
443,143	-		LRK54_RS02090	0.31	-0.7
443,143	-		LRK54_RS02090	0.31	-1.4
443,143	-		LRK54_RS02090	0.31	-0.8
443,143	-		LRK54_RS02090	0.31	-1.1
443,143	-		LRK54_RS02090	0.31	-1.5
443,143	-				+0.9
443,143	-		LRK54_RS02090	0.31	-2.6
443,143	-		LRK54_RS02090	0.31	+1.0
443,143	-		LRK54_RS02090	0.31	+1.4
443,143	-		LRK54_RS02090	0.31	+0.0
443,143	-		LRK54_RS02090	0.31	-0.9
443,295	+		LRK54_RS02090	0.34	-1.3
443,295	+		LRK54_RS02090	0.34	-1.4
443,296	-		LRK54_RS02090	0.34	+0.2
443,331	+		LRK54_RS02090	0.35	-1.1
443,617	-		LRK54_RS02090	0.41	-1.4
443,658	+		LRK54_RS02090	0.41	-0.7
443,658	+		LRK54_RS02090	0.41	-1.4
443,658	+		LRK54_RS02090	0.41	-2.1
443,658	+		LRK54_RS02090	0.41	-0.9
443,658	+		LRK54_RS02090	0.41	-1.0
443,658	+		LRK54_RS02090	0.41	+0.1
443,658	+		LRK54_RS02090	0.41	-1.0
443,658	+		LRK54_RS02090	0.41	-0.7
443,659	-		LRK54_RS02090	0.41	-1.4
443,659	-		LRK54_RS02090	0.41	-0.7
443,659	-		LRK54_RS02090	0.41	-0.8
443,659	-		LRK54_RS02090	0.41	-2.4
443,659	-		LRK54_RS02090	0.41	-1.8
443,659	-		LRK54_RS02090	0.41	-2.4
443,659	-		LRK54_RS02090	0.41	-0.6
443,659	-		LRK54_RS02090	0.41	-1.1
443,659	-		LRK54_RS02090	0.41	+1.5
443,659	-		LRK54_RS02090	0.41	-1.7
443,659	-		LRK54_RS02090	0.41	-1.1
443,659	-		LRK54_RS02090	0.41	+0.2
443,659	-		LRK54_RS02090	0.41	-0.8
443,659	-		LRK54_RS02090	0.41	-2.8
443,733	+		LRK54_RS02090	0.43	+0.1
443,733	+		LRK54_RS02090	0.43	-1.5
443,734	-		LRK54_RS02090	0.43	-2.1
443,734	-		LRK54_RS02090	0.43	+0.1
444,132	+		LRK54_RS02090	0.51	-2.9
444,132	+		LRK54_RS02090	0.51	-1.3
444,132	+		LRK54_RS02090	0.51	-1.3
444,132	+		LRK54_RS02090	0.51	-0.9
444,132	+		LRK54_RS02090	0.51	-0.7
444,132	+		LRK54_RS02090	0.51	-0.8
444,132	+		LRK54_RS02090	0.51	-1.3
444,132	+		LRK54_RS02090	0.51	-1.5
444,133	-				-0.2
444,133	-		LRK54_RS02090	0.51	-0.0
444,133	-		LRK54_RS02090	0.51	-2.0
444,133	-		LRK54_RS02090	0.51	-1.4
444,133	-		LRK54_RS02090	0.51	-1.4
444,133	-		LRK54_RS02090	0.51	-1.2
444,133	-		LRK54_RS02090	0.51	-1.7
444,133	-		LRK54_RS02090	0.51	-1.0
444,141	+		LRK54_RS02090	0.51	-2.3
444,141	+		LRK54_RS02090	0.51	-1.1
444,141	+		LRK54_RS02090	0.51	-0.9
444,141	+		LRK54_RS02090	0.51	-0.1
444,141	+		LRK54_RS02090	0.51	-0.7
444,141	+		LRK54_RS02090	0.51	-0.6
444,141	+		LRK54_RS02090	0.51	-1.1
444,142	-		LRK54_RS02090	0.51	-1.0
444,142	-		LRK54_RS02090	0.51	-0.8
444,142	-		LRK54_RS02090	0.51	-1.2
444,142	-		LRK54_RS02090	0.51	-0.7
444,142	-		LRK54_RS02090	0.51	+0.3
444,519	+		LRK54_RS02090	0.59	-0.9
444,519	+		LRK54_RS02090	0.59	+0.2
444,519	+		LRK54_RS02090	0.59	-0.0
444,519	+		LRK54_RS02090	0.59	-1.5
444,519	+		LRK54_RS02090	0.59	-0.7
444,519	+		LRK54_RS02090	0.59	-0.0
444,519	+		LRK54_RS02090	0.59	-1.1
444,519	+		LRK54_RS02090	0.59	-0.2
444,519	+		LRK54_RS02090	0.59	-1.2
444,519	+		LRK54_RS02090	0.59	-2.7
444,519	+		LRK54_RS02090	0.59	-0.4
444,519	+		LRK54_RS02090	0.59	-0.6
444,519	+		LRK54_RS02090	0.59	-1.1
444,519	+		LRK54_RS02090	0.59	-1.0
444,519	+		LRK54_RS02090	0.59	-2.6
444,519	+		LRK54_RS02090	0.59	-1.3
444,519	+		LRK54_RS02090	0.59	-1.5
444,520	-				-0.9
444,520	-		LRK54_RS02090	0.59	-1.1
444,520	-		LRK54_RS02090	0.59	-0.7
444,520	-		LRK54_RS02090	0.59	-2.2
444,520	-		LRK54_RS02090	0.59	-0.4
444,520	-		LRK54_RS02090	0.59	-0.8
444,520	-		LRK54_RS02090	0.59	-0.2
444,520	-		LRK54_RS02090	0.59	-1.6
444,520	-		LRK54_RS02090	0.59	+0.4
444,520	-		LRK54_RS02090	0.59	-0.8
444,520	-		LRK54_RS02090	0.59	-0.8
444,520	-		LRK54_RS02090	0.59	-0.6
444,520	-		LRK54_RS02090	0.59	-1.3
444,520	-		LRK54_RS02090	0.59	-1.3
444,520	-		LRK54_RS02090	0.59	-1.6
444,520	-		LRK54_RS02090	0.59	-1.8
444,520	-		LRK54_RS02090	0.59	-0.4
444,555	+		LRK54_RS02090	0.60	-1.2
444,555	+		LRK54_RS02090	0.60	-1.3
444,555	+		LRK54_RS02090	0.60	-0.9
444,555	+		LRK54_RS02090	0.60	-0.3
444,555	+		LRK54_RS02090	0.60	-0.4
444,555	+		LRK54_RS02090	0.60	+1.2
444,556	-		LRK54_RS02090	0.60	-0.7
444,556	-		LRK54_RS02090	0.60	-1.0
444,556	-		LRK54_RS02090	0.60	-0.2
444,556	-		LRK54_RS02090	0.60	-1.9
444,556	-		LRK54_RS02090	0.60	-1.9
444,556	-		LRK54_RS02090	0.60	-0.7
444,556	-		LRK54_RS02090	0.60	-0.2
444,556	-		LRK54_RS02090	0.60	+0.7
444,556	-		LRK54_RS02090	0.60	-0.6
444,556	-		LRK54_RS02090	0.60	-3.0
444,556	-		LRK54_RS02090	0.60	-1.4
444,564	+		LRK54_RS02090	0.60	-0.9
444,771	+		LRK54_RS02090	0.64	-1.4
444,771	+		LRK54_RS02090	0.64	-3.4
444,771	+		LRK54_RS02090	0.64	-1.7
444,771	+		LRK54_RS02090	0.64	-0.2
444,772	-		LRK54_RS02090	0.64	-0.8
444,772	-		LRK54_RS02090	0.64	+0.1
444,772	-		LRK54_RS02090	0.64	-0.6
444,855	+		LRK54_RS02090	0.66	-1.2
444,855	+		LRK54_RS02090	0.66	-0.0
444,856	-		LRK54_RS02090	0.66	-0.4
444,856	-		LRK54_RS02090	0.66	-0.9
444,856	-		LRK54_RS02090	0.66	-1.6
444,897	+		LRK54_RS02090	0.67	-0.8
444,897	+		LRK54_RS02090	0.67	-2.4
444,897	+		LRK54_RS02090	0.67	-1.6
444,897	+		LRK54_RS02090	0.67	-1.0
444,897	+		LRK54_RS02090	0.67	-0.6
444,898	-		LRK54_RS02090	0.67	-0.9
444,898	-		LRK54_RS02090	0.67	-2.2
444,898	-		LRK54_RS02090	0.67	-2.0
444,898	-		LRK54_RS02090	0.67	+0.3
444,898	-		LRK54_RS02090	0.67	-2.6
444,898	-		LRK54_RS02090	0.67	-1.3
444,945	+		LRK54_RS02090	0.68	+0.2
444,945	+		LRK54_RS02090	0.68	-0.2
444,945	+		LRK54_RS02090	0.68	-1.3
444,945	+		LRK54_RS02090	0.68	-1.4
444,945	+		LRK54_RS02090	0.68	-2.7
444,945	+		LRK54_RS02090	0.68	-0.7
444,945	+		LRK54_RS02090	0.68	-0.3
444,945	+		LRK54_RS02090	0.68	-0.4
444,945	+		LRK54_RS02090	0.68	-0.5
444,945	+		LRK54_RS02090	0.68	-1.9
444,946	-		LRK54_RS02090	0.68	-0.7
444,946	-		LRK54_RS02090	0.68	+0.3
444,946	-		LRK54_RS02090	0.68	-1.5
444,946	-		LRK54_RS02090	0.68	-0.9
444,946	-		LRK54_RS02090	0.68	-1.2
444,946	-		LRK54_RS02090	0.68	-1.1
444,946	-		LRK54_RS02090	0.68	-2.4
444,946	-		LRK54_RS02090	0.68	-1.2
444,946	-		LRK54_RS02090	0.68	-2.0
444,946	-		LRK54_RS02090	0.68	-1.8
444,987	+		LRK54_RS02090	0.68	-1.7
445,131	+		LRK54_RS02090	0.71	-1.9
445,131	+		LRK54_RS02090	0.71	-1.6
445,131	+		LRK54_RS02090	0.71	+1.7
445,131	+		LRK54_RS02090	0.71	-0.7
445,131	+		LRK54_RS02090	0.71	-1.2
445,132	-		LRK54_RS02090	0.71	-0.5
445,132	-		LRK54_RS02090	0.71	-0.5
445,132	-		LRK54_RS02090	0.71	-1.8
445,473	+		LRK54_RS02090	0.78	-0.9
445,473	+		LRK54_RS02090	0.78	-1.2
445,473	+		LRK54_RS02090	0.78	-0.5
445,474	-		LRK54_RS02090	0.78	-0.3
445,474	-		LRK54_RS02090	0.78	-1.0
445,474	-		LRK54_RS02090	0.78	-1.6
445,474	-		LRK54_RS02090	0.78	-0.2
445,474	-		LRK54_RS02090	0.78	-0.1
445,474	-		LRK54_RS02090	0.78	-0.9
445,474	-		LRK54_RS02090	0.78	-0.7
445,557	+		LRK54_RS02090	0.80	+0.3
445,557	+		LRK54_RS02090	0.80	-1.1
445,557	+		LRK54_RS02090	0.80	-0.4
445,557	+		LRK54_RS02090	0.80	+0.3
445,557	+		LRK54_RS02090	0.80	-1.3
445,558	-		LRK54_RS02090	0.80	-0.6
445,558	-		LRK54_RS02090	0.80	-2.0
445,558	-		LRK54_RS02090	0.80	-0.4
445,558	-		LRK54_RS02090	0.80	-0.7
445,558	-		LRK54_RS02090	0.80	-1.7
445,558	-		LRK54_RS02090	0.80	-0.9
445,558	-		LRK54_RS02090	0.80	-1.0
445,558	-		LRK54_RS02090	0.80	-0.3
445,558	-		LRK54_RS02090	0.80	-1.1
445,638	+		LRK54_RS02090	0.82	-0.7
445,638	+		LRK54_RS02090	0.82	-0.6
445,638	+		LRK54_RS02090	0.82	-1.8
445,638	+				-0.3
445,638	+		LRK54_RS02090	0.82	-1.0
445,638	+		LRK54_RS02090	0.82	-0.2
445,638	+		LRK54_RS02090	0.82	-0.9
445,638	+		LRK54_RS02090	0.82	-2.1
445,639	-		LRK54_RS02090	0.82	-1.1
445,639	-		LRK54_RS02090	0.82	-1.1
445,639	-		LRK54_RS02090	0.82	-1.2
445,639	-		LRK54_RS02090	0.82	-0.5
445,639	-		LRK54_RS02090	0.82	+0.1
445,639	-		LRK54_RS02090	0.82	-0.2
445,647	+		LRK54_RS02090	0.82	-0.5
445,647	+		LRK54_RS02090	0.82	-1.7
445,647	+		LRK54_RS02090	0.82	-1.8
445,647	+		LRK54_RS02090	0.82	-1.6
445,647	+		LRK54_RS02090	0.82	-1.9
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445,848	+		LRK54_RS02090	0.86	-0.5
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