Experiment: Mannan from Saccharomyces cerevisiae 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16090 and HMPREF1058_RS16085 are separated by 289 nucleotides HMPREF1058_RS16085 and HMPREF1058_RS16080 overlap by 1 nucleotides
HMPREF1058_RS16090: HMPREF1058_RS16090 - haloacid dehalogenase-like hydrolase, at 759,580 to 760,686
_RS16090
HMPREF1058_RS16085: HMPREF1058_RS16085 - hypothetical protein, at 760,976 to 762,733
_RS16085
HMPREF1058_RS16080: HMPREF1058_RS16080 - SIR2 family protein, at 762,733 to 766,209
_RS16080
Position (kb) 760
761
762
763 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 760.035 kb on + strand, within HMPREF1058_RS16090 at 760.047 kb on + strand, within HMPREF1058_RS16090 at 760.054 kb on + strand, within HMPREF1058_RS16090 at 760.054 kb on + strand, within HMPREF1058_RS16090 at 760.054 kb on + strand, within HMPREF1058_RS16090 at 760.054 kb on + strand, within HMPREF1058_RS16090 at 760.054 kb on + strand, within HMPREF1058_RS16090 at 760.055 kb on - strand, within HMPREF1058_RS16090 at 760.055 kb on - strand, within HMPREF1058_RS16090 at 760.076 kb on - strand, within HMPREF1058_RS16090 at 760.077 kb on + strand, within HMPREF1058_RS16090 at 760.077 kb on + strand, within HMPREF1058_RS16090 at 760.077 kb on + strand, within HMPREF1058_RS16090 at 760.078 kb on - strand, within HMPREF1058_RS16090 at 760.078 kb on - strand, within HMPREF1058_RS16090 at 760.079 kb on + strand, within HMPREF1058_RS16090 at 760.079 kb on + strand, within HMPREF1058_RS16090 at 760.079 kb on + strand, within HMPREF1058_RS16090 at 760.080 kb on - strand, within HMPREF1058_RS16090 at 760.080 kb on - strand, within HMPREF1058_RS16090 at 760.080 kb on - strand, within HMPREF1058_RS16090 at 760.082 kb on - strand, within HMPREF1058_RS16090 at 760.086 kb on + strand, within HMPREF1058_RS16090 at 760.153 kb on + strand, within HMPREF1058_RS16090 at 760.154 kb on - strand, within HMPREF1058_RS16090 at 760.200 kb on - strand, within HMPREF1058_RS16090 at 760.204 kb on - strand, within HMPREF1058_RS16090 at 760.207 kb on - strand, within HMPREF1058_RS16090 at 760.245 kb on - strand, within HMPREF1058_RS16090 at 760.300 kb on + strand, within HMPREF1058_RS16090 at 760.300 kb on + strand, within HMPREF1058_RS16090 at 760.331 kb on + strand, within HMPREF1058_RS16090 at 760.331 kb on + strand, within HMPREF1058_RS16090 at 760.332 kb on - strand, within HMPREF1058_RS16090 at 760.344 kb on + strand, within HMPREF1058_RS16090 at 760.371 kb on + strand, within HMPREF1058_RS16090 at 760.381 kb on - strand, within HMPREF1058_RS16090 at 760.446 kb on + strand, within HMPREF1058_RS16090 at 760.451 kb on - strand, within HMPREF1058_RS16090 at 760.576 kb on + strand at 760.576 kb on + strand at 760.577 kb on - strand at 760.577 kb on - strand at 760.577 kb on - strand at 760.578 kb on + strand at 760.578 kb on + strand at 760.580 kb on + strand at 760.580 kb on + strand at 760.581 kb on - strand at 760.581 kb on - strand at 760.629 kb on - strand at 760.633 kb on + strand at 760.651 kb on - strand at 760.691 kb on + strand at 760.691 kb on + strand at 760.721 kb on + strand at 760.743 kb on + strand at 760.744 kb on - strand at 760.889 kb on - strand at 760.906 kb on + strand at 760.981 kb on + strand at 761.058 kb on - strand at 761.065 kb on - strand at 761.155 kb on - strand at 761.165 kb on + strand, within HMPREF1058_RS16085 at 761.166 kb on - strand, within HMPREF1058_RS16085 at 761.200 kb on + strand, within HMPREF1058_RS16085 at 761.207 kb on + strand, within HMPREF1058_RS16085 at 761.219 kb on + strand, within HMPREF1058_RS16085 at 761.229 kb on - strand, within HMPREF1058_RS16085 at 761.229 kb on - strand, within HMPREF1058_RS16085 at 761.282 kb on - strand, within HMPREF1058_RS16085 at 761.307 kb on - strand, within HMPREF1058_RS16085 at 761.309 kb on - strand, within HMPREF1058_RS16085 at 761.330 kb on - strand, within HMPREF1058_RS16085 at 761.339 kb on + strand, within HMPREF1058_RS16085 at 761.343 kb on - strand, within HMPREF1058_RS16085 at 761.343 kb on - strand, within HMPREF1058_RS16085 at 761.343 kb on - strand, within HMPREF1058_RS16085 at 761.405 kb on + strand, within HMPREF1058_RS16085 at 761.545 kb on + strand, within HMPREF1058_RS16085 at 761.553 kb on - strand, within HMPREF1058_RS16085 at 761.563 kb on + strand, within HMPREF1058_RS16085 at 761.594 kb on + strand, within HMPREF1058_RS16085 at 761.599 kb on + strand, within HMPREF1058_RS16085 at 761.601 kb on + strand, within HMPREF1058_RS16085 at 761.696 kb on - strand, within HMPREF1058_RS16085 at 761.815 kb on - strand, within HMPREF1058_RS16085 at 761.825 kb on + strand, within HMPREF1058_RS16085 at 761.857 kb on + strand, within HMPREF1058_RS16085 at 761.899 kb on + strand, within HMPREF1058_RS16085 at 761.900 kb on - strand, within HMPREF1058_RS16085 at 761.906 kb on + strand, within HMPREF1058_RS16085 at 761.912 kb on - strand, within HMPREF1058_RS16085 at 761.943 kb on + strand, within HMPREF1058_RS16085 at 761.960 kb on + strand, within HMPREF1058_RS16085 at 761.992 kb on + strand, within HMPREF1058_RS16085 at 761.992 kb on + strand, within HMPREF1058_RS16085 at 761.993 kb on - strand, within HMPREF1058_RS16085 at 761.993 kb on - strand, within HMPREF1058_RS16085 at 761.993 kb on - strand, within HMPREF1058_RS16085 at 761.998 kb on + strand, within HMPREF1058_RS16085 at 762.049 kb on - strand, within HMPREF1058_RS16085 at 762.147 kb on - strand, within HMPREF1058_RS16085 at 762.147 kb on - strand, within HMPREF1058_RS16085 at 762.205 kb on - strand, within HMPREF1058_RS16085 at 762.230 kb on - strand, within HMPREF1058_RS16085 at 762.247 kb on + strand, within HMPREF1058_RS16085 at 762.271 kb on - strand, within HMPREF1058_RS16085 at 762.293 kb on + strand, within HMPREF1058_RS16085 at 762.408 kb on - strand, within HMPREF1058_RS16085 at 762.453 kb on - strand, within HMPREF1058_RS16085 at 762.526 kb on + strand, within HMPREF1058_RS16085 at 762.526 kb on + strand, within HMPREF1058_RS16085 at 762.560 kb on - strand at 762.596 kb on - strand at 762.625 kb on + strand at 762.627 kb on + strand at 762.628 kb on - strand at 762.651 kb on - strand at 762.687 kb on - strand at 762.787 kb on + strand at 762.787 kb on + strand at 762.888 kb on + strand at 762.982 kb on + strand at 762.983 kb on - strand at 762.998 kb on - strand at 763.022 kb on + strand at 763.022 kb on + strand at 763.023 kb on - strand at 763.023 kb on - strand at 763.027 kb on - strand at 763.049 kb on + strand at 763.060 kb on - strand at 763.063 kb on + strand at 763.063 kb on + strand at 763.064 kb on - strand at 763.064 kb on - strand at 763.064 kb on - strand at 763.117 kb on - strand, within HMPREF1058_RS16080 at 763.155 kb on + strand, within HMPREF1058_RS16080 at 763.155 kb on + strand, within HMPREF1058_RS16080 at 763.197 kb on + strand, within HMPREF1058_RS16080 at 763.197 kb on + strand, within HMPREF1058_RS16080 at 763.198 kb on - strand, within HMPREF1058_RS16080 at 763.203 kb on + strand, within HMPREF1058_RS16080 at 763.204 kb on - strand, within HMPREF1058_RS16080 at 763.237 kb on - strand, within HMPREF1058_RS16080 at 763.246 kb on + strand, within HMPREF1058_RS16080 at 763.343 kb on + strand, within HMPREF1058_RS16080 at 763.370 kb on - strand, within HMPREF1058_RS16080 at 763.438 kb on - strand, within HMPREF1058_RS16080 at 763.618 kb on - strand, within HMPREF1058_RS16080 at 763.652 kb on - strand, within HMPREF1058_RS16080 at 763.666 kb on + strand, within HMPREF1058_RS16080 at 763.688 kb on - strand, within HMPREF1058_RS16080 at 763.688 kb on - strand, within HMPREF1058_RS16080 at 763.702 kb on - strand, within HMPREF1058_RS16080
Per-strain Table
Position Strand Gene LocusTag Fraction Mannan from Saccharomyces cerevisiae 5 mg/ml (C) remove 760,035 + HMPREF1058_RS16090 0.41 +0.1 760,047 + HMPREF1058_RS16090 0.42 +0.1 760,054 + HMPREF1058_RS16090 0.43 +0.0 760,054 + HMPREF1058_RS16090 0.43 -0.9 760,054 + HMPREF1058_RS16090 0.43 -0.5 760,054 + HMPREF1058_RS16090 0.43 +0.2 760,054 + HMPREF1058_RS16090 0.43 -0.4 760,055 - HMPREF1058_RS16090 0.43 +0.1 760,055 - HMPREF1058_RS16090 0.43 -1.7 760,076 - HMPREF1058_RS16090 0.45 -0.9 760,077 + HMPREF1058_RS16090 0.45 +0.2 760,077 + HMPREF1058_RS16090 0.45 -0.8 760,077 + HMPREF1058_RS16090 0.45 +0.3 760,078 - HMPREF1058_RS16090 0.45 +1.3 760,078 - HMPREF1058_RS16090 0.45 +0.9 760,079 + HMPREF1058_RS16090 0.45 -0.0 760,079 + HMPREF1058_RS16090 0.45 +1.4 760,079 + HMPREF1058_RS16090 0.45 +0.8 760,080 - HMPREF1058_RS16090 0.45 -0.5 760,080 - HMPREF1058_RS16090 0.45 -0.0 760,080 - HMPREF1058_RS16090 0.45 -0.2 760,082 - HMPREF1058_RS16090 0.45 +0.5 760,086 + HMPREF1058_RS16090 0.46 -0.5 760,153 + HMPREF1058_RS16090 0.52 -0.2 760,154 - HMPREF1058_RS16090 0.52 -0.1 760,200 - HMPREF1058_RS16090 0.56 -0.1 760,204 - HMPREF1058_RS16090 0.56 -0.4 760,207 - HMPREF1058_RS16090 0.57 -0.4 760,245 - HMPREF1058_RS16090 0.60 -0.1 760,300 + HMPREF1058_RS16090 0.65 -1.5 760,300 + HMPREF1058_RS16090 0.65 +0.1 760,331 + HMPREF1058_RS16090 0.68 +0.4 760,331 + HMPREF1058_RS16090 0.68 +0.1 760,332 - HMPREF1058_RS16090 0.68 -0.5 760,344 + HMPREF1058_RS16090 0.69 +0.7 760,371 + HMPREF1058_RS16090 0.71 -1.0 760,381 - HMPREF1058_RS16090 0.72 -1.4 760,446 + HMPREF1058_RS16090 0.78 -0.7 760,451 - HMPREF1058_RS16090 0.79 +0.9 760,576 + +0.3 760,576 + -1.2 760,577 - -0.8 760,577 - -0.2 760,577 - +0.5 760,578 + +1.4 760,578 + +0.3 760,580 + -1.1 760,580 + +1.3 760,581 - -3.4 760,581 - -0.1 760,629 - +0.4 760,633 + +0.2 760,651 - +0.1 760,691 + +0.2 760,691 + -0.9 760,721 + +0.1 760,743 + +0.4 760,744 - -0.1 760,889 - +2.0 760,906 + +0.5 760,981 + -0.8 761,058 - +1.1 761,065 - -0.4 761,155 - +1.2 761,165 + HMPREF1058_RS16085 0.11 -0.0 761,166 - HMPREF1058_RS16085 0.11 +0.2 761,200 + HMPREF1058_RS16085 0.13 -0.3 761,207 + HMPREF1058_RS16085 0.13 -0.9 761,219 + HMPREF1058_RS16085 0.14 +0.4 761,229 - HMPREF1058_RS16085 0.14 -2.6 761,229 - HMPREF1058_RS16085 0.14 +0.6 761,282 - HMPREF1058_RS16085 0.17 +1.5 761,307 - HMPREF1058_RS16085 0.19 +0.1 761,309 - HMPREF1058_RS16085 0.19 -1.2 761,330 - HMPREF1058_RS16085 0.20 -0.3 761,339 + HMPREF1058_RS16085 0.21 +1.5 761,343 - HMPREF1058_RS16085 0.21 +0.1 761,343 - HMPREF1058_RS16085 0.21 +1.0 761,343 - HMPREF1058_RS16085 0.21 +0.2 761,405 + HMPREF1058_RS16085 0.24 -1.2 761,545 + HMPREF1058_RS16085 0.32 +0.4 761,553 - HMPREF1058_RS16085 0.33 -1.2 761,563 + HMPREF1058_RS16085 0.33 +0.7 761,594 + HMPREF1058_RS16085 0.35 +0.5 761,599 + HMPREF1058_RS16085 0.35 -0.8 761,601 + HMPREF1058_RS16085 0.36 +0.4 761,696 - HMPREF1058_RS16085 0.41 +0.3 761,815 - HMPREF1058_RS16085 0.48 +0.8 761,825 + HMPREF1058_RS16085 0.48 +0.5 761,857 + HMPREF1058_RS16085 0.50 -2.9 761,899 + HMPREF1058_RS16085 0.53 +1.0 761,900 - HMPREF1058_RS16085 0.53 +0.5 761,906 + HMPREF1058_RS16085 0.53 -0.5 761,912 - HMPREF1058_RS16085 0.53 +0.1 761,943 + HMPREF1058_RS16085 0.55 -0.2 761,960 + HMPREF1058_RS16085 0.56 +0.1 761,992 + HMPREF1058_RS16085 0.58 +0.1 761,992 + HMPREF1058_RS16085 0.58 -1.2 761,993 - HMPREF1058_RS16085 0.58 +0.2 761,993 - HMPREF1058_RS16085 0.58 -0.9 761,993 - HMPREF1058_RS16085 0.58 +0.5 761,998 + HMPREF1058_RS16085 0.58 -0.1 762,049 - HMPREF1058_RS16085 0.61 -0.4 762,147 - HMPREF1058_RS16085 0.67 +0.7 762,147 - HMPREF1058_RS16085 0.67 +0.1 762,205 - HMPREF1058_RS16085 0.70 +1.7 762,230 - HMPREF1058_RS16085 0.71 -0.2 762,247 + HMPREF1058_RS16085 0.72 -0.3 762,271 - HMPREF1058_RS16085 0.74 -1.2 762,293 + HMPREF1058_RS16085 0.75 -0.1 762,408 - HMPREF1058_RS16085 0.81 +0.6 762,453 - HMPREF1058_RS16085 0.84 -2.1 762,526 + HMPREF1058_RS16085 0.88 -1.1 762,526 + HMPREF1058_RS16085 0.88 +0.0 762,560 - -0.1 762,596 - -0.2 762,625 + -0.5 762,627 + -0.7 762,628 - +0.0 762,651 - +0.1 762,687 - +0.4 762,787 + +0.0 762,787 + +1.5 762,888 + +0.1 762,982 + -2.0 762,983 - -0.4 762,998 - -0.1 763,022 + -0.6 763,022 + -0.6 763,023 - -0.3 763,023 - +0.1 763,027 - -0.2 763,049 + -0.6 763,060 - +0.9 763,063 + +0.3 763,063 + +0.2 763,064 - -0.3 763,064 - +1.8 763,064 - -0.1 763,117 - HMPREF1058_RS16080 0.11 -0.5 763,155 + HMPREF1058_RS16080 0.12 +1.2 763,155 + HMPREF1058_RS16080 0.12 +0.4 763,197 + HMPREF1058_RS16080 0.13 -0.7 763,197 + HMPREF1058_RS16080 0.13 +1.4 763,198 - HMPREF1058_RS16080 0.13 -0.3 763,203 + HMPREF1058_RS16080 0.14 -0.9 763,204 - HMPREF1058_RS16080 0.14 -1.5 763,237 - HMPREF1058_RS16080 0.14 +0.1 763,246 + HMPREF1058_RS16080 0.15 +0.6 763,343 + HMPREF1058_RS16080 0.18 -0.3 763,370 - HMPREF1058_RS16080 0.18 -0.8 763,438 - HMPREF1058_RS16080 0.20 -2.3 763,618 - HMPREF1058_RS16080 0.25 +0.6 763,652 - HMPREF1058_RS16080 0.26 +0.9 763,666 + HMPREF1058_RS16080 0.27 +0.7 763,688 - HMPREF1058_RS16080 0.27 +1.2 763,688 - HMPREF1058_RS16080 0.27 -0.5 763,702 - HMPREF1058_RS16080 0.28 -0.2
Or see this region's nucleotide sequence