Experiment: Mannan from Saccharomyces cerevisiae 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06715 and HMPREF1058_RS06710 are separated by 3 nucleotides HMPREF1058_RS06710 and HMPREF1058_RS06705 overlap by 16 nucleotides HMPREF1058_RS06705 and HMPREF1058_RS06700 are separated by 4 nucleotides
HMPREF1058_RS06715: HMPREF1058_RS06715 - glycosyltransferase, at 412,700 to 413,647
_RS06715
HMPREF1058_RS06710: HMPREF1058_RS06710 - DUF4422 domain-containing protein, at 413,651 to 414,475
_RS06710
HMPREF1058_RS06705: HMPREF1058_RS06705 - acyltransferase, at 414,460 to 415,071
_RS06705
HMPREF1058_RS06700: HMPREF1058_RS06700 - glycosyltransferase family 2 protein, at 415,076 to 416,236
_RS06700
Position (kb) 414
415
416 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 413.462 kb on + strand, within HMPREF1058_RS06715 at 413.463 kb on - strand, within HMPREF1058_RS06715 at 413.463 kb on - strand, within HMPREF1058_RS06715 at 413.472 kb on - strand, within HMPREF1058_RS06715 at 413.611 kb on + strand at 413.616 kb on + strand at 413.616 kb on + strand at 413.617 kb on - strand at 413.617 kb on - strand at 413.617 kb on - strand at 413.617 kb on - strand at 413.617 kb on - strand at 413.617 kb on - strand at 413.647 kb on + strand at 413.675 kb on - strand at 413.675 kb on - strand at 413.702 kb on - strand at 413.760 kb on + strand, within HMPREF1058_RS06710 at 413.784 kb on - strand, within HMPREF1058_RS06710 at 413.813 kb on + strand, within HMPREF1058_RS06710 at 413.932 kb on + strand, within HMPREF1058_RS06710 at 413.939 kb on - strand, within HMPREF1058_RS06710 at 413.939 kb on - strand, within HMPREF1058_RS06710 at 413.939 kb on - strand, within HMPREF1058_RS06710 at 413.941 kb on + strand, within HMPREF1058_RS06710 at 413.941 kb on + strand, within HMPREF1058_RS06710 at 414.064 kb on - strand, within HMPREF1058_RS06710 at 414.125 kb on + strand, within HMPREF1058_RS06710 at 414.176 kb on - strand, within HMPREF1058_RS06710 at 414.177 kb on - strand, within HMPREF1058_RS06710 at 414.259 kb on + strand, within HMPREF1058_RS06710 at 414.333 kb on - strand, within HMPREF1058_RS06710 at 414.333 kb on - strand, within HMPREF1058_RS06710 at 414.334 kb on + strand, within HMPREF1058_RS06710 at 414.334 kb on + strand, within HMPREF1058_RS06710 at 414.334 kb on + strand, within HMPREF1058_RS06710 at 414.338 kb on - strand, within HMPREF1058_RS06710 at 414.349 kb on + strand, within HMPREF1058_RS06710 at 414.354 kb on - strand, within HMPREF1058_RS06710 at 414.450 kb on - strand at 414.492 kb on + strand at 414.536 kb on + strand, within HMPREF1058_RS06705 at 414.545 kb on - strand, within HMPREF1058_RS06705 at 414.610 kb on + strand, within HMPREF1058_RS06705 at 414.629 kb on - strand, within HMPREF1058_RS06705 at 414.636 kb on + strand, within HMPREF1058_RS06705 at 414.636 kb on + strand, within HMPREF1058_RS06705 at 414.636 kb on + strand at 414.636 kb on + strand, within HMPREF1058_RS06705 at 414.637 kb on - strand, within HMPREF1058_RS06705 at 414.637 kb on - strand, within HMPREF1058_RS06705 at 414.715 kb on + strand, within HMPREF1058_RS06705 at 414.730 kb on + strand, within HMPREF1058_RS06705 at 414.924 kb on - strand, within HMPREF1058_RS06705 at 414.954 kb on - strand, within HMPREF1058_RS06705 at 415.052 kb on - strand at 415.063 kb on + strand at 415.064 kb on - strand at 415.156 kb on - strand at 415.185 kb on + strand at 415.185 kb on + strand at 415.185 kb on + strand at 415.189 kb on + strand at 415.189 kb on + strand at 415.218 kb on + strand, within HMPREF1058_RS06700 at 415.221 kb on - strand, within HMPREF1058_RS06700 at 415.240 kb on + strand, within HMPREF1058_RS06700 at 415.402 kb on + strand, within HMPREF1058_RS06700 at 415.514 kb on - strand, within HMPREF1058_RS06700 at 415.515 kb on + strand, within HMPREF1058_RS06700 at 415.515 kb on + strand, within HMPREF1058_RS06700 at 415.516 kb on - strand, within HMPREF1058_RS06700 at 415.516 kb on - strand, within HMPREF1058_RS06700 at 415.516 kb on - strand, within HMPREF1058_RS06700 at 415.770 kb on - strand, within HMPREF1058_RS06700 at 415.770 kb on - strand, within HMPREF1058_RS06700 at 415.839 kb on - strand, within HMPREF1058_RS06700 at 415.854 kb on + strand, within HMPREF1058_RS06700 at 415.929 kb on - strand, within HMPREF1058_RS06700 at 415.995 kb on - strand, within HMPREF1058_RS06700
Per-strain Table
Position Strand Gene LocusTag Fraction Mannan from Saccharomyces cerevisiae 5 mg/ml (C) remove 413,462 + HMPREF1058_RS06715 0.80 +1.2 413,463 - HMPREF1058_RS06715 0.80 +0.1 413,463 - HMPREF1058_RS06715 0.80 +0.7 413,472 - HMPREF1058_RS06715 0.81 +0.4 413,611 + -0.5 413,616 + +0.3 413,616 + +0.6 413,617 - +0.4 413,617 - +1.4 413,617 - +0.6 413,617 - +0.9 413,617 - +2.7 413,617 - +3.6 413,647 + +1.7 413,675 - +0.6 413,675 - +0.5 413,702 - -0.2 413,760 + HMPREF1058_RS06710 0.13 +1.5 413,784 - HMPREF1058_RS06710 0.16 +1.8 413,813 + HMPREF1058_RS06710 0.20 +1.0 413,932 + HMPREF1058_RS06710 0.34 +0.8 413,939 - HMPREF1058_RS06710 0.35 +1.2 413,939 - HMPREF1058_RS06710 0.35 +0.6 413,939 - HMPREF1058_RS06710 0.35 +0.3 413,941 + HMPREF1058_RS06710 0.35 +1.4 413,941 + HMPREF1058_RS06710 0.35 +1.0 414,064 - HMPREF1058_RS06710 0.50 +1.5 414,125 + HMPREF1058_RS06710 0.57 +0.3 414,176 - HMPREF1058_RS06710 0.64 +1.1 414,177 - HMPREF1058_RS06710 0.64 +0.6 414,259 + HMPREF1058_RS06710 0.74 +0.9 414,333 - HMPREF1058_RS06710 0.83 -0.5 414,333 - HMPREF1058_RS06710 0.83 +1.0 414,334 + HMPREF1058_RS06710 0.83 +1.3 414,334 + HMPREF1058_RS06710 0.83 +1.3 414,334 + HMPREF1058_RS06710 0.83 +1.3 414,338 - HMPREF1058_RS06710 0.83 +0.4 414,349 + HMPREF1058_RS06710 0.85 +2.3 414,354 - HMPREF1058_RS06710 0.85 +0.9 414,450 - +0.7 414,492 + +1.6 414,536 + HMPREF1058_RS06705 0.12 +1.4 414,545 - HMPREF1058_RS06705 0.14 -0.4 414,610 + HMPREF1058_RS06705 0.25 +0.2 414,629 - HMPREF1058_RS06705 0.28 +1.8 414,636 + HMPREF1058_RS06705 0.29 +1.6 414,636 + HMPREF1058_RS06705 0.29 +2.8 414,636 + +1.3 414,636 + HMPREF1058_RS06705 0.29 +0.9 414,637 - HMPREF1058_RS06705 0.29 +3.3 414,637 - HMPREF1058_RS06705 0.29 +1.5 414,715 + HMPREF1058_RS06705 0.42 +0.7 414,730 + HMPREF1058_RS06705 0.44 +0.5 414,924 - HMPREF1058_RS06705 0.76 -0.2 414,954 - HMPREF1058_RS06705 0.81 +0.7 415,052 - +1.8 415,063 + -0.0 415,064 - +2.7 415,156 - +1.8 415,185 + +0.4 415,185 + +0.7 415,185 + +0.1 415,189 + -0.7 415,189 + -0.0 415,218 + HMPREF1058_RS06700 0.12 +0.1 415,221 - HMPREF1058_RS06700 0.12 -2.4 415,240 + HMPREF1058_RS06700 0.14 -2.1 415,402 + HMPREF1058_RS06700 0.28 -0.8 415,514 - HMPREF1058_RS06700 0.38 -1.3 415,515 + HMPREF1058_RS06700 0.38 -1.1 415,515 + HMPREF1058_RS06700 0.38 +0.7 415,516 - HMPREF1058_RS06700 0.38 -0.4 415,516 - HMPREF1058_RS06700 0.38 -0.2 415,516 - HMPREF1058_RS06700 0.38 -1.2 415,770 - HMPREF1058_RS06700 0.60 +0.4 415,770 - HMPREF1058_RS06700 0.60 -2.7 415,839 - HMPREF1058_RS06700 0.66 -0.9 415,854 + HMPREF1058_RS06700 0.67 +0.6 415,929 - HMPREF1058_RS06700 0.73 +0.4 415,995 - HMPREF1058_RS06700 0.79 +0.2
Or see this region's nucleotide sequence