Experiment: Mannan from Saccharomyces cerevisiae 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06605 and HMPREF1058_RS06600 are separated by 68 nucleotides HMPREF1058_RS06600 and HMPREF1058_RS06595 are separated by 7 nucleotides HMPREF1058_RS06595 and HMPREF1058_RS06590 are separated by 10 nucleotides
HMPREF1058_RS06605: HMPREF1058_RS06605 - thiol peroxidase, at 439,092 to 439,595
_RS06605
HMPREF1058_RS06600: HMPREF1058_RS06600 - DedA family protein, at 439,664 to 440,290
_RS06600
HMPREF1058_RS06595: HMPREF1058_RS06595 - hypothetical protein, at 440,298 to 441,815
_RS06595
HMPREF1058_RS06590: HMPREF1058_RS06590 - glutamine--tRNA ligase/YqeY domain fusion protein, at 441,826 to 443,565
_RS06590
Position (kb) 440
441
442 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 439.347 kb on - strand, within HMPREF1058_RS06605 at 439.485 kb on - strand, within HMPREF1058_RS06605 at 439.487 kb on - strand, within HMPREF1058_RS06605 at 439.487 kb on - strand, within HMPREF1058_RS06605 at 439.487 kb on - strand, within HMPREF1058_RS06605 at 439.487 kb on - strand, within HMPREF1058_RS06605 at 439.577 kb on + strand at 439.578 kb on - strand at 439.578 kb on - strand at 439.701 kb on - strand at 439.715 kb on + strand at 439.716 kb on - strand at 439.731 kb on - strand, within HMPREF1058_RS06600 at 439.829 kb on - strand, within HMPREF1058_RS06600 at 439.848 kb on + strand, within HMPREF1058_RS06600 at 440.037 kb on + strand, within HMPREF1058_RS06600 at 440.062 kb on - strand, within HMPREF1058_RS06600 at 440.070 kb on + strand, within HMPREF1058_RS06600 at 440.420 kb on + strand at 440.509 kb on + strand, within HMPREF1058_RS06595 at 440.510 kb on - strand, within HMPREF1058_RS06595 at 440.596 kb on - strand, within HMPREF1058_RS06595 at 440.730 kb on + strand, within HMPREF1058_RS06595 at 440.802 kb on - strand, within HMPREF1058_RS06595 at 440.802 kb on - strand, within HMPREF1058_RS06595 at 440.804 kb on - strand, within HMPREF1058_RS06595 at 440.863 kb on - strand, within HMPREF1058_RS06595 at 440.918 kb on + strand, within HMPREF1058_RS06595 at 440.957 kb on - strand, within HMPREF1058_RS06595 at 441.263 kb on - strand, within HMPREF1058_RS06595 at 441.380 kb on + strand, within HMPREF1058_RS06595 at 441.381 kb on - strand, within HMPREF1058_RS06595 at 441.383 kb on - strand at 441.466 kb on - strand, within HMPREF1058_RS06595 at 441.663 kb on - strand, within HMPREF1058_RS06595 at 441.663 kb on - strand, within HMPREF1058_RS06595 at 441.682 kb on + strand at 441.850 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mannan from Saccharomyces cerevisiae 5 mg/ml (C) remove 439,347 - HMPREF1058_RS06605 0.51 +0.4 439,485 - HMPREF1058_RS06605 0.78 -0.2 439,487 - HMPREF1058_RS06605 0.78 +0.1 439,487 - HMPREF1058_RS06605 0.78 -0.2 439,487 - HMPREF1058_RS06605 0.78 +0.0 439,487 - HMPREF1058_RS06605 0.78 -0.8 439,577 + -0.5 439,578 - -0.3 439,578 - +0.5 439,701 - +2.6 439,715 + +1.0 439,716 - -2.0 439,731 - HMPREF1058_RS06600 0.11 -1.9 439,829 - HMPREF1058_RS06600 0.26 -1.5 439,848 + HMPREF1058_RS06600 0.29 -1.3 440,037 + HMPREF1058_RS06600 0.59 -2.5 440,062 - HMPREF1058_RS06600 0.63 -0.5 440,070 + HMPREF1058_RS06600 0.65 -2.1 440,420 + -0.3 440,509 + HMPREF1058_RS06595 0.14 -1.9 440,510 - HMPREF1058_RS06595 0.14 -3.0 440,596 - HMPREF1058_RS06595 0.20 -2.9 440,730 + HMPREF1058_RS06595 0.28 -0.3 440,802 - HMPREF1058_RS06595 0.33 -3.7 440,802 - HMPREF1058_RS06595 0.33 -2.0 440,804 - HMPREF1058_RS06595 0.33 -2.0 440,863 - HMPREF1058_RS06595 0.37 -0.3 440,918 + HMPREF1058_RS06595 0.41 -1.3 440,957 - HMPREF1058_RS06595 0.43 -1.4 441,263 - HMPREF1058_RS06595 0.64 -1.8 441,380 + HMPREF1058_RS06595 0.71 -1.2 441,381 - HMPREF1058_RS06595 0.71 -2.4 441,383 - +2.3 441,466 - HMPREF1058_RS06595 0.77 -1.5 441,663 - HMPREF1058_RS06595 0.90 -2.6 441,663 - HMPREF1058_RS06595 0.90 -3.1 441,682 + -0.3 441,850 - +1.5
Or see this region's nucleotide sequence