Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS04455

Experiment: Mannan from Saccharomyces cerevisiae 5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS04460 and HMPREF1058_RS04455 are separated by 154 nucleotidesHMPREF1058_RS04455 and HMPREF1058_RS04450 are separated by 319 nucleotides HMPREF1058_RS04460: HMPREF1058_RS04460 - PepSY-like domain-containing protein, at 28,912 to 29,763 _RS04460 HMPREF1058_RS04455: HMPREF1058_RS04455 - MIP family channel protein, at 29,918 to 30,595 _RS04455 HMPREF1058_RS04450: HMPREF1058_RS04450 - OmpA family protein, at 30,915 to 32,048 _RS04450 Position (kb) 29 30 31Strain fitness (log2 ratio) -2 -1 0 1 2 3at 28.951 kb on + strandat 28.951 kb on + strandat 28.951 kb on + strandat 28.970 kb on - strandat 28.988 kb on + strandat 28.988 kb on + strandat 29.080 kb on + strand, within HMPREF1058_RS04460at 29.102 kb on + strand, within HMPREF1058_RS04460at 29.173 kb on + strand, within HMPREF1058_RS04460at 29.229 kb on + strand, within HMPREF1058_RS04460at 29.229 kb on + strand, within HMPREF1058_RS04460at 29.229 kb on + strand, within HMPREF1058_RS04460at 29.232 kb on - strand, within HMPREF1058_RS04460at 29.384 kb on - strand, within HMPREF1058_RS04460at 29.397 kb on - strand, within HMPREF1058_RS04460at 29.398 kb on + strand, within HMPREF1058_RS04460at 29.399 kb on - strand, within HMPREF1058_RS04460at 29.399 kb on - strand, within HMPREF1058_RS04460at 29.456 kb on + strand, within HMPREF1058_RS04460at 29.508 kb on - strand, within HMPREF1058_RS04460at 29.529 kb on - strand, within HMPREF1058_RS04460at 29.593 kb on + strand, within HMPREF1058_RS04460at 29.594 kb on - strand, within HMPREF1058_RS04460at 29.631 kb on + strand, within HMPREF1058_RS04460at 29.663 kb on - strand, within HMPREF1058_RS04460at 29.763 kb on + strandat 29.787 kb on + strandat 29.847 kb on + strandat 29.984 kb on + strandat 29.985 kb on - strandat 29.986 kb on + strand, within HMPREF1058_RS04455at 30.042 kb on - strand, within HMPREF1058_RS04455at 30.171 kb on - strand, within HMPREF1058_RS04455at 30.177 kb on - strand, within HMPREF1058_RS04455at 30.180 kb on - strand, within HMPREF1058_RS04455at 30.186 kb on - strand, within HMPREF1058_RS04455at 30.193 kb on + strand, within HMPREF1058_RS04455at 30.200 kb on + strand, within HMPREF1058_RS04455at 30.335 kb on + strand, within HMPREF1058_RS04455at 30.335 kb on + strand, within HMPREF1058_RS04455at 30.339 kb on + strand, within HMPREF1058_RS04455at 30.434 kb on - strand, within HMPREF1058_RS04455at 30.479 kb on + strand, within HMPREF1058_RS04455at 30.479 kb on + strand, within HMPREF1058_RS04455at 30.479 kb on + strand, within HMPREF1058_RS04455at 30.479 kb on + strand, within HMPREF1058_RS04455at 30.479 kb on + strand, within HMPREF1058_RS04455at 30.479 kb on + strand, within HMPREF1058_RS04455at 30.479 kb on + strand, within HMPREF1058_RS04455at 30.480 kb on - strand, within HMPREF1058_RS04455at 30.488 kb on - strand, within HMPREF1058_RS04455at 30.536 kb on - strandat 30.562 kb on + strandat 30.669 kb on + strandat 30.750 kb on + strandat 30.751 kb on - strandat 30.781 kb on - strandat 30.782 kb on + strandat 30.783 kb on - strandat 30.832 kb on + strandat 30.851 kb on + strandat 30.856 kb on + strandat 30.857 kb on - strandat 30.940 kb on + strandat 30.947 kb on + strandat 30.948 kb on - strandat 30.953 kb on + strandat 30.953 kb on + strandat 30.966 kb on + strandat 30.966 kb on + strandat 30.966 kb on + strandat 30.983 kb on - strandat 31.127 kb on - strand, within HMPREF1058_RS04450at 31.148 kb on + strand, within HMPREF1058_RS04450at 31.148 kb on + strand, within HMPREF1058_RS04450at 31.155 kb on - strand, within HMPREF1058_RS04450at 31.297 kb on - strand, within HMPREF1058_RS04450at 31.328 kb on + strand, within HMPREF1058_RS04450at 31.328 kb on + strand, within HMPREF1058_RS04450at 31.328 kb on + strand, within HMPREF1058_RS04450at 31.337 kb on + strand, within HMPREF1058_RS04450at 31.413 kb on + strand, within HMPREF1058_RS04450at 31.418 kb on + strand, within HMPREF1058_RS04450at 31.418 kb on + strand, within HMPREF1058_RS04450at 31.418 kb on + strand, within HMPREF1058_RS04450at 31.418 kb on + strand, within HMPREF1058_RS04450at 31.443 kb on - strand, within HMPREF1058_RS04450at 31.494 kb on + strand, within HMPREF1058_RS04450at 31.494 kb on + strand, within HMPREF1058_RS04450at 31.591 kb on + strand, within HMPREF1058_RS04450at 31.592 kb on - strand, within HMPREF1058_RS04450at 31.592 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mannan from Saccharomyces cerevisiae 5 mg/ml (C)
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28,951 + -0.0
28,951 + -1.7
28,951 + +0.2
28,970 - -0.3
28,988 + -1.6
28,988 + -1.0
29,080 + HMPREF1058_RS04460 0.20 -1.0
29,102 + HMPREF1058_RS04460 0.22 +0.9
29,173 + HMPREF1058_RS04460 0.31 -1.5
29,229 + HMPREF1058_RS04460 0.37 +0.2
29,229 + HMPREF1058_RS04460 0.37 +0.0
29,229 + HMPREF1058_RS04460 0.37 -1.3
29,232 - HMPREF1058_RS04460 0.38 +1.1
29,384 - HMPREF1058_RS04460 0.55 -0.5
29,397 - HMPREF1058_RS04460 0.57 -0.4
29,398 + HMPREF1058_RS04460 0.57 -0.0
29,399 - HMPREF1058_RS04460 0.57 +0.1
29,399 - HMPREF1058_RS04460 0.57 -0.5
29,456 + HMPREF1058_RS04460 0.64 -0.6
29,508 - HMPREF1058_RS04460 0.70 +0.3
29,529 - HMPREF1058_RS04460 0.72 +0.5
29,593 + HMPREF1058_RS04460 0.80 +0.3
29,594 - HMPREF1058_RS04460 0.80 +0.2
29,631 + HMPREF1058_RS04460 0.84 +0.6
29,663 - HMPREF1058_RS04460 0.88 +0.4
29,763 + -1.1
29,787 + +0.9
29,847 + +1.0
29,984 + +3.5
29,985 - -0.9
29,986 + HMPREF1058_RS04455 0.10 -0.5
30,042 - HMPREF1058_RS04455 0.18 -0.0
30,171 - HMPREF1058_RS04455 0.37 -0.8
30,177 - HMPREF1058_RS04455 0.38 -0.1
30,180 - HMPREF1058_RS04455 0.39 +0.1
30,186 - HMPREF1058_RS04455 0.40 -2.2
30,193 + HMPREF1058_RS04455 0.41 +0.2
30,200 + HMPREF1058_RS04455 0.42 +0.0
30,335 + HMPREF1058_RS04455 0.62 -1.4
30,335 + HMPREF1058_RS04455 0.62 -0.1
30,339 + HMPREF1058_RS04455 0.62 -0.7
30,434 - HMPREF1058_RS04455 0.76 -0.7
30,479 + HMPREF1058_RS04455 0.83 -0.2
30,479 + HMPREF1058_RS04455 0.83 +0.3
30,479 + HMPREF1058_RS04455 0.83 -1.0
30,479 + HMPREF1058_RS04455 0.83 +0.4
30,479 + HMPREF1058_RS04455 0.83 +0.8
30,479 + HMPREF1058_RS04455 0.83 -0.6
30,479 + HMPREF1058_RS04455 0.83 +1.0
30,480 - HMPREF1058_RS04455 0.83 +0.6
30,488 - HMPREF1058_RS04455 0.84 +0.3
30,536 - +0.8
30,562 + -0.5
30,669 + +1.3
30,750 + +1.1
30,751 - -0.0
30,781 - +2.0
30,782 + +2.0
30,783 - +1.0
30,832 + +0.0
30,851 + +0.2
30,856 + -1.7
30,857 - +0.2
30,940 + +0.2
30,947 + -0.2
30,948 - -1.2
30,953 + +0.1
30,953 + -0.0
30,966 + +0.4
30,966 + +1.0
30,966 + -0.2
30,983 - -0.3
31,127 - HMPREF1058_RS04450 0.19 -0.5
31,148 + HMPREF1058_RS04450 0.21 +1.6
31,148 + HMPREF1058_RS04450 0.21 -0.6
31,155 - HMPREF1058_RS04450 0.21 -1.8
31,297 - HMPREF1058_RS04450 0.34 -1.4
31,328 + HMPREF1058_RS04450 0.36 -0.9
31,328 + HMPREF1058_RS04450 0.36 +0.2
31,328 + HMPREF1058_RS04450 0.36 -1.0
31,337 + HMPREF1058_RS04450 0.37 +0.8
31,413 + HMPREF1058_RS04450 0.44 +0.0
31,418 + HMPREF1058_RS04450 0.44 +0.1
31,418 + HMPREF1058_RS04450 0.44 -2.5
31,418 + HMPREF1058_RS04450 0.44 -1.3
31,418 + HMPREF1058_RS04450 0.44 -2.3
31,443 - HMPREF1058_RS04450 0.47 +2.2
31,494 + HMPREF1058_RS04450 0.51 -0.5
31,494 + HMPREF1058_RS04450 0.51 -1.5
31,591 + HMPREF1058_RS04450 0.60 -0.5
31,592 - HMPREF1058_RS04450 0.60 -1.9
31,592 - +1.0

Or see this region's nucleotide sequence